Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 4.0e-226 787.7 385 100.0
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 3.6e-179 631.7 385 81.0
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 9.0e-178 627.1 385 80.3
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.9e-176 622.1 385 80.8
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.9e-176 622.1 385 80.8
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 1.3e-173 613.2 385 79.5
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.8e-173 612.8 385 79.2
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.7e-168 596.3 385 77.7
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 3.2e-167 592.0 385 76.9
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 3.0e-165 585.5 385 76.4
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 4.8e-163 578.2 395 74.9
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 9.0e-162 573.9 397 74.3
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 7.2e-151 537.7 396 68.7
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 9.7e-148 527.3 370 71.1
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 3.7e-147 525.4 391 67.5
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 6.3e-147 524.6 362 71.8
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.4e-146 523.5 363 72.5
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 2.4e-146 522.7 380 68.2
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.2e-145 520.4 366 70.5
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.5e-145 520.0 362 70.4
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.5e-145 520.0 383 68.4
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 2.6e-145 519.2 380 68.7
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 5.9e-145 518.1 368 68.2
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 7.7e-145 517.7 380 68.4
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 2.9e-144 515.8 393 67.4
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.1e-143 513.8 365 69.9
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 1.4e-143 513.5 355 71.5
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.5e-143 512.7 360 71.7
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 3.2e-143 512.3 356 71.3
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.2e-142 510.4 364 69.2
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 7.9e-142 507.7 365 69.3
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.8e-141 506.5 372 69.4
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 1.8e-141 506.5 396 64.4
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.8e-141 506.5 355 70.7
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 6.7e-141 504.6 385 66.5
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 6.7e-141 504.6 370 67.3
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 1.1e-140 503.8 388 66.0
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 3.3e-140 502.3 357 68.9
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 7.4e-140 501.1 357 69.5
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.3e-139 500.4 357 69.2
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.8e-139 499.2 384 65.4
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 6.3e-139 498.0 347 72.3
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.4e-138 496.9 370 66.8
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.4e-138 496.9 369 67.8
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 9.1e-138 494.2 367 67.3
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.6e-137 493.4 371 66.8
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.5e-137 492.3 360 70.0
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.5e-137 491.9 369 67.8
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 5.9e-137 491.5 356 69.4
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 1.7e-136 490.0 367 66.2
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 6.5e-136 488.0 356 68.0
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 8.5e-136 487.6 356 68.8
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.1e-135 487.3 367 66.8
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.9e-135 486.5 367 67.3
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.9e-135 486.5 383 64.8
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 5.5e-135 485.0 359 67.4
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 5.5e-135 485.0 358 67.0
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.2e-134 483.8 359 67.4
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.0e-133 480.7 397 63.2
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.0e-133 480.7 391 62.7
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.0e-133 480.7 287 79.4
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 8.8e-133 477.6 370 64.3
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.2e-132 477.2 361 66.5
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 2.6e-132 476.1 360 67.2
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 5.7e-132 474.9 358 67.0
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.7e-131 473.4 365 64.4
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.7e-131 473.4 379 64.1
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 2.2e-131 473.0 364 65.4
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.8e-131 472.6 360 66.1
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 3.1e-130 469.2 362 63.8
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 7.0e-130 468.0 382 61.0
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 7.7e-129 464.5 388 66.0
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.9e-128 462.6 349 65.3
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 3.8e-128 462.2 391 59.8
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 8.5e-128 461.1 362 63.8
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 2.5e-127 459.5 401 60.1
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 7.2e-127 458.0 368 62.0
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 9.4e-127 457.6 349 64.8
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.6e-126 456.8 391 58.3
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 2.1e-126 456.4 378 61.1
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 3.6e-126 455.7 353 63.5
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 3.6e-126 455.7 373 62.5
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 8.0e-126 454.5 287 73.9
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.0e-125 454.1 287 74.2
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 3.0e-125 452.6 396 59.3
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 5.2e-125 451.8 352 64.5
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 6.8e-125 451.4 369 61.0
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 6.8e-125 451.4 356 63.8
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 3.4e-124 449.1 354 63.6
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 3.4e-124 449.1 325 67.1
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 5.7e-124 448.4 352 63.9
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 5.7e-124 448.4 352 63.9
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 7.5e-124 448.0 367 61.9
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 7.5e-124 448.0 309 70.9
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 9.8e-124 447.6 306 70.6
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.7e-123 446.8 355 62.8
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-122 444.1 352 63.6
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.8e-122 443.4 362 62.7
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 3.1e-122 442.6 366 60.4
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.7e-121 439.5 355 63.4
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 2.7e-121 439.5 369 61.0
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 7.2e-119 431.4 356 63.5
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 3.6e-118 429.1 286 71.0
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.0e-117 427.6 355 62.0
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.4e-117 427.2 361 60.1
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 3.0e-117 426.0 365 60.3
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 4.0e-117 425.6 370 58.6
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 8.8e-117 424.5 357 61.1
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.5e-116 423.7 355 60.6
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 4.4e-116 422.2 331 64.4
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.2e-115 419.9 499 46.7
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 4.1e-114 415.6 372 58.3
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.1e-114 415.6 348 60.3
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.0e-113 413.3 362 59.7
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 4.5e-113 412.1 361 58.4
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 1.5e-111 407.1 363 57.6
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 2.5e-111 406.4 362 58.8
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.6e-110 403.7 372 58.6
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.1e-110 403.3 362 58.8
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.1e-110 403.3 375 55.2
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 8.0e-110 401.4 362 58.6
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.8e-109 400.2 362 58.6
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 3.0e-109 399.4 367 57.5
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 6.8e-109 398.3 364 58.2
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 6.8e-109 398.3 364 58.2
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 8.9e-109 397.9 362 58.0
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 8.9e-109 397.9 362 58.0
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.5e-108 397.1 367 57.5
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 3.4e-108 396.0 324 61.7
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.3e-107 394.0 364 57.7
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 1.7e-107 393.7 357 57.7
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 4.9e-107 392.1 352 57.4
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.4e-106 390.6 290 60.7
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 6.2e-102 375.2 285 66.3
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 9.8e-100 367.9 277 68.2
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 4.7e-94 349.0 343 53.9
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 2.0e-92 343.6 403 47.9
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 3.2e-90 336.3 251 64.9
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 3.1e-69 266.5 182 71.4
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 1.7e-59 234.2 314 40.8
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 5.5e-58 229.2 293 42.3
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.2e-57 228.0 256 52.3
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 6.2e-54 215.7 154 66.2
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.1e-53 214.9 171 62.6
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.4e-40 171.4 246 41.1
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 4.2e-26 123.2 202 37.1
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 8.0e-25 119.0 72 72.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 1.4e-24 118.2 174 42.0
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.1e-23 115.2 96 61.5
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.0e-19 102.1 279 29.0
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 8.5e-19 99.0 111 49.5
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 6.3e-14 82.8 56 67.9
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 1.4e-13 81.6 111 44.1


User provided reference genes

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