Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0006935 Lotus japonicus HOM05D006416 ORTHO05D008054 3.8e-160 568.2 299 100.0
Glyma.20G231600 Glycine max HOM05D006416 ORTHO05D008054 5.6e-135 484.6 299 86.0
Glyma.10G157100 Glycine max HOM05D006416 ORTHO05D008054 6.2e-134 481.1 299 85.3
Phvul.007G182400 Phaseolus vulgaris HOM05D006416 ORTHO05D008054 9.9e-132 473.8 299 83.9
Psat6g148880 Pisum sativum HOM05D006416 ORTHO05D008054 5.1e-128 461.5 299 81.3
TPR.G2722 Trifolium pratense HOM05D006416 ORTHO05D008054 7.3e-127 457.6 299 81.3
Ca_10088_v3 Cicer arietinum L. HOM05D006416 ORTHO05D008054 1.6e-126 456.4 299 81.3
arahy.Tifrunner.gnm1.ann1.ICF70N Arachis hypogaea HOM05D006416 ORTHO05D008054 1.1e-125 453.8 301 80.7
arahy.Tifrunner.gnm1.ann1.L7FLNG Arachis hypogaea HOM05D006416 ORTHO05D008054 1.4e-125 453.4 301 80.4
Medtr1g082420 Medicago truncatula HOM05D006416 ORTHO05D008054 2.9e-123 445.7 299 79.3
Lalb_Chr06g0167821 Lupinus albus HOM05D006416 ORTHO05D008054 4.9e-123 444.9 299 80.3
QL03p004338 Quercus lobata HOM05D006416 ORTHO05D008054 5.4e-122 441.4 298 80.9
Gohir.A11G262900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 5.8e-116 421.4 299 76.6
Gohir.D11G272900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 3.8e-115 418.7 299 76.3
Gorai.007G294200 Gossypium raimondii HOM05D006416 ORTHO05D008054 3.2e-114 415.6 299 75.9
COL.COLO4_13518 Corchorus olitorius HOM05D006416 ORTHO05D008054 5.4e-114 414.8 300 74.3
FAN02G3793 Fragaria x ananassa HOM05D006416 ORTHO05D008054 5.4e-114 414.8 283 76.7
Prupe.6G330400 Prunus persica HOM05D006416 ORTHO05D008054 5.4e-114 414.8 290 76.6
Haze_04238 Corylus avellana HOM05D006416 ORTHO05D008054 7.1e-114 414.5 299 76.9
Duzib177G0710 Durio zibethinus HOM05D006416 ORTHO05D008054 9.3e-114 414.1 299 75.9
Duzib128G1696 Durio zibethinus HOM05D006416 ORTHO05D008054 2.1e-113 412.9 299 74.6
FAN14G2526 Fragaria x ananassa HOM05D006416 ORTHO05D008054 2.7e-113 412.5 290 74.8
Lj9A681T37 Lonicera japonica HOM05D006416 ORTHO05D008054 3.5e-113 412.1 299 74.6
Thecc.05G308500 Theobroma cacao HOM05D006416 ORTHO05D008054 6.0e-113 411.4 299 74.2
FAN05G2936 Fragaria x ananassa HOM05D006416 ORTHO05D008054 7.9e-113 411.0 283 76.3
RcHm_v2.0_Chr3g0454061 Rosa chinensis HOM05D006416 ORTHO05D008054 7.9e-113 411.0 268 78.7
FvH4_6g05320 Fragaria vesca HOM05D006416 ORTHO05D008054 1.3e-112 410.2 290 74.5
FAN05G0060 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.3e-112 410.2 283 76.3
Cfa006543 Carpinus fangiana HOM05D006416 ORTHO05D008054 2.3e-112 409.5 300 75.7
Sed0000831 Sechium edule HOM05D006416 ORTHO05D008054 3.0e-112 409.1 294 74.1
FAN14G3791 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.9e-112 408.7 290 74.1
Manes.09G163500 Manihot esculenta HOM05D006416 ORTHO05D008054 5.1e-112 408.3 300 74.0
CiPaw.08G166800 Carya illinoinensis HOM05D006416 ORTHO05D008054 6.7e-112 407.9 299 74.2
CANSAT54G1414 Cannabis sativa HOM05D006416 ORTHO05D008054 8.7e-112 407.5 294 76.9
Cpa.g.sc48.9 Carica papaya HOM05D006416 ORTHO05D008054 8.7e-112 407.5 300 74.0
FAN09G2836 Fragaria x ananassa HOM05D006416 ORTHO05D008054 8.7e-112 407.5 289 74.7
Nn4g26146 Nelumbo nucifera HOM05D006416 ORTHO05D008054 3.3e-111 405.6 299 74.2
ClCG02G016070 Citrullus lanatus HOM05D006416 ORTHO05D008054 4.3e-111 405.2 299 72.6
Rhsim07G0179600 Rhododendron simsii HOM05D006416 ORTHO05D008054 4.3e-111 405.2 287 75.3
Ciclev10002001m.g Citrus clementina HOM05D006416 ORTHO05D008054 7.4e-111 404.4 293 73.7
Nitab4.5_0007238g0010 Nicotiana tabacum HOM05D006416 ORTHO05D008054 2.1e-110 402.9 299 72.2
GSVIVG01000004001 Vitis vinifera HOM05D006416 ORTHO05D008054 2.1e-110 402.9 300 73.7
CAN.G1134.18 Capsicum annuum HOM05D006416 ORTHO05D008054 4.8e-110 401.7 299 73.6
MELO3C004307.2 Cucumis melo HOM05D006416 ORTHO05D008054 4.8e-110 401.7 300 73.3
EL10Ac4g09303 Beta vulgaris HOM05D006416 ORTHO05D008054 8.1e-110 401.0 299 73.9
Ah.06g190130 Amaranthus hybridus HOM05D006416 ORTHO05D008054 3.1e-109 399.1 299 72.6
Nitab4.5_0004940g0060 Nicotiana tabacum HOM05D006416 ORTHO05D008054 1.2e-108 397.1 299 71.6
Eucgr.H04456 Eucalyptus grandis HOM05D006416 ORTHO05D008054 1.5e-108 396.7 299 71.9
Solyc01g098640.3 Solanum lycopersicum HOM05D006416 ORTHO05D008054 2.6e-108 396.0 299 72.6
Actinidia23608 Actinidia chinensis HOM05D006416 ORTHO05D008054 4.5e-108 395.2 299 70.9
Peaxi162Scf00434g00329 Petunia axillaris HOM05D006416 ORTHO05D008054 4.5e-108 395.2 290 72.8
Sc16g0008340 Simmondsia chinensis HOM05D006416 ORTHO05D008054 5.8e-108 394.8 288 73.3
Sopen01g042190 Solanum pennellii HOM05D006416 ORTHO05D008054 5.8e-108 394.8 299 72.9
Nn1g02093 Nelumbo nucifera HOM05D006416 ORTHO05D008054 7.6e-108 394.4 304 70.7
Potri.013G026400 Populus trichocarpa HOM05D006416 ORTHO05D008054 9.9e-108 394.0 300 72.0
PGSC0003DMG402028574 Solanum tuberosum HOM05D006416 ORTHO05D008054 1.3e-107 393.7 299 73.2
Atru.chr2.491 Acer truncatum HOM05D006416 ORTHO05D008054 2.9e-107 392.5 309 69.3
THA.LOC104823736 Tarenaya hassleriana HOM05D006416 ORTHO05D008054 2.9e-107 392.5 303 71.0
MD04G1209400 Malus domestica HOM05D006416 ORTHO05D008054 3.8e-107 392.1 290 72.8
TAR362G1050 Trochodendron aralioides HOM05D006416 ORTHO05D008054 3.8e-107 392.1 299 71.6
MD12G1224000 Malus domestica HOM05D006416 ORTHO05D008054 1.1e-106 390.6 290 72.1
Potri.005G038700 Populus trichocarpa HOM05D006416 ORTHO05D008054 4.2e-106 388.7 299 69.6
Sabra05G0037800 Salix brachista HOM05D006416 ORTHO05D008054 4.2e-106 388.7 300 71.3
Cc02_g32670 Coffea canephora HOM05D006416 ORTHO05D008054 4.6e-105 385.2 290 72.1
PGR031G2709 Punica granatum HOM05D006416 ORTHO05D008054 1.0e-104 384.0 286 73.8
SGA_v2.0_scaffold204G41638 Striga asiatica HOM05D006416 ORTHO05D008054 1.8e-104 383.3 280 71.8
TWI12G1406 Tripterygium wilfordii HOM05D006416 ORTHO05D008054 1.8e-104 383.3 299 70.9
Oeu043843.1 Olea europaea HOM05D006416 ORTHO05D008054 2.3e-104 382.9 299 71.6
BcaC09g49606 Brassica carinata HOM05D006416 ORTHO05D008054 3.9e-104 382.1 300 70.3
C01p34560 Brassica napus HOM05D006416 ORTHO05D008054 3.9e-104 382.1 300 70.3
BolC1t03427H Brassica oleracea HOM05D006416 ORTHO05D008054 3.9e-104 382.1 300 70.3
SpUn0002_0460 Schrenkiella parvula HOM05D006416 ORTHO05D008054 3.9e-104 382.1 299 69.9
AL1G65240 Arabidopsis lyrata HOM05D006416 ORTHO05D008054 5.1e-104 381.7 300 70.0
BcaB04g20144 Brassica carinata HOM05D006416 ORTHO05D008054 5.1e-104 381.7 300 69.7
A01p27150 Brassica napus HOM05D006416 ORTHO05D008054 8.7e-104 380.9 300 70.3
BraA01t02850Z Brassica rapa HOM05D006416 ORTHO05D008054 8.7e-104 380.9 300 70.3
CARHR055910 Cardamine hirsuta HOM05D006416 ORTHO05D008054 1.1e-103 380.6 299 70.2
Lsat_1_v5_gn_8_116020 Lactuca sativa HOM05D006416 ORTHO05D008054 2.5e-103 379.4 301 67.8
MSTRG.2929 Avicennia marina HOM05D006416 ORTHO05D008054 3.3e-103 379.0 271 73.8
Oeu032896.2 Olea europaea HOM05D006416 ORTHO05D008054 3.3e-103 379.0 299 71.6
CsaV3_2G004910 Cucumis sativus L. HOM05D006416 ORTHO05D008054 4.3e-103 378.6 314 66.9
Thhalv10023632m.g Eutrema salsugineum HOM05D006416 ORTHO05D008054 4.3e-103 378.6 240 80.0
Carub.0002s0864 Capsella rubella HOM05D006416 ORTHO05D008054 7.4e-103 377.9 301 69.8
Dinv22903 Davidia involucrata HOM05D006416 ORTHO05D008054 1.3e-102 377.1 229 83.0
Migut.H00517 Erythranthe guttata HOM05D006416 ORTHO05D008054 1.6e-102 376.7 268 73.1
MBI19_g27532_MAGBIO Magnolia biondii HOM05D006416 ORTHO05D008054 4.8e-102 375.2 299 69.2
AT1G54780 Arabidopsis thaliana HOM05D006416 ORTHO05D008054 1.1e-101 374.0 300 69.3
Aqoxy2G03216 Aquilegia oxysepala HOM05D006416 ORTHO05D008054 6.9e-101 371.3 299 65.6
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 1.5e-100 370.2 236 78.4
Aa31LG2G11890 Aethionema arabicum HOM05D006416 ORTHO05D008054 1.3e-99 367.1 300 67.0
DCAR_029435 Daucus carota HOM05D006416 ORTHO05D008054 1.3e-99 367.1 235 82.1
ATR0626G312 Amborella trichopoda HOM05D006416 ORTHO05D008054 1.7e-99 366.7 301 67.8
unitig_899.g15132 Utricularia gibba HOM05D000909 ORTHO05D000928 2.9e-99 365.9 233 79.8
CDE08G0960 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 1.9e-98 363.2 301 66.4
HPP92_006953 Vanilla planifolia HOM05D006416 ORTHO05D008054 1.2e-97 360.5 314 64.3
SalBow1G1453 Salvia bowleyana HOM05D006416 ORTHO05D008054 1.6e-97 360.1 291 69.4
CDE02G0677 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 3.5e-97 359.0 301 65.4
HanXRQChr09g0258731 Helianthus annuus HOM05D006416 ORTHO05D008054 3.5e-97 359.0 301 66.8
HanXRQChr15g0486581 Helianthus annuus HOM05D006416 ORTHO05D008054 6.0e-97 358.2 299 66.2
CSS0022908 Camellia sinensis var. sinensis HOM05D006416 ORTHO05D008054 3.9e-96 355.5 296 68.9
PSO407G0317 Papaver somniferum HOM05D006416 ORTHO05D008054 4.3e-95 352.1 299 62.2
PSO170G0754 Papaver somniferum HOM05D006416 ORTHO05D008054 2.8e-94 349.4 300 62.7
Os05g0401100 Oryza sativa ssp. japonica HOM05D006416 ORTHO05D008054 7.7e-92 341.3 234 75.6
Zm00001eb346800 Zea mays HOM05D006416 ORTHO05D008054 1.7e-91 340.1 288 66.3
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.7e-87 324.3 258 68.2
SEGI_37406 Sequoiadendron giganteum HOM05D006416 ORTHO05D008054 9.7e-87 324.3 254 66.5
Lalb_Chr02g0148391 Lupinus albus HOM05D006416 ORTHO05D008054 2.2e-86 323.2 216 80.6
Pp3c7_6980 Physcomitrium patens HOM05D006416 ORTHO05D008054 2.8e-86 322.8 281 63.3
Pp3c11_19220 Physcomitrium patens HOM05D006416 ORTHO05D008054 1.5e-84 317.0 279 63.1
Migut.C00218 Erythranthe guttata HOM05D006416 ORTHO05D008054 7.7e-84 314.7 303 61.1
Hma1.2p1_0666F.1_g199430 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 2.1e-81 306.6 230 69.6
SMO329G0005 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 5.7e-79 298.5 239 65.3
Mapoly0079s0006 Marchantia polymorpha HOM05D006416 ORTHO05D008054 2.2e-78 296.6 229 66.8
CBR_g30711 Chara braunii HOM05D006416 ORTHO05D008054 3.0e-72 276.2 241 59.8
SMO353G0282 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 2.4e-69 266.5 203 64.5
Aa31LG1G5580 Aethionema arabicum HOM05D006416 ORTHO05D008054 1.0e-59 234.6 137 81.0
Hma1.2p1_0666F.1_g199440 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 3.1e-53 213.0 135 77.8
Cre03.g182150 Chlamydomonas reinhardtii HOM05D006416 ORTHO05D008054 7.2e-50 201.8 249 42.2
MCO01G659 Micromonas commoda HOM05D006416 ORTHO05D008054 1.5e-47 194.1 211 46.9
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 1.6e-36 157.5 86 90.7
PRCOL_00003436 Prasinoderma coloniale HOM05D006416 ORTHO05D008054 1.3e-35 154.5 222 37.4
Dinv23978 Davidia involucrata HOM05D006416 ORTHO05D008054 1.1e-32 144.8 89 82.0
Lalb_Chr02g0148401 Lupinus albus HOM05D006416 ORTHO05D008054 5.2e-32 142.5 83 84.3
Haze_01725 Corylus avellana HOM05D006416 ORTHO05D008054 1.1e-26 124.8 64 96.9


User provided reference genes

Program Settings