Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 8.8e-229 796.6 397 100.0
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 5.8e-204 714.1 397 86.9
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 8.3e-203 710.3 397 86.6
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 4.1e-202 708.0 394 87.3
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 2.7e-201 705.3 397 86.4
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 4.7e-198 694.5 398 84.7
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 1.8e-197 692.6 397 84.9
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 6.8e-197 690.6 398 84.4
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 2.9e-195 685.3 397 84.9
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 6.4e-195 684.1 400 83.8
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.3e-192 676.4 401 82.3
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 6.6e-192 674.1 400 82.0
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 1.1e-191 673.3 401 82.0
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 5.6e-191 671.0 397 82.4
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 7.3e-191 670.6 400 82.8
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 2.1e-190 669.1 401 81.8
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 4.7e-190 667.9 400 81.5
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 2.4e-189 665.6 400 81.0
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 4.0e-189 664.8 400 81.0
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 6.8e-189 664.1 400 81.5
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 3.4e-188 661.8 398 81.4
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 3.8e-187 658.3 397 80.9
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 6.4e-187 657.5 396 80.3
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 3.2e-186 655.2 401 80.3
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 3.2e-186 655.2 400 81.0
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 9.2e-186 653.7 400 79.0
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 1.2e-185 653.3 398 80.7
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 1.2e-185 653.3 397 78.8
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 1.2e-185 653.3 397 79.8
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 3.5e-185 651.7 400 79.2
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 4.6e-185 651.4 401 79.1
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 6.0e-185 651.0 400 79.2
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 7.8e-185 650.6 400 80.5
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 1.0e-184 650.2 401 78.6
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 1.7e-184 649.4 400 80.0
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.9e-183 646.0 401 78.3
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 2.5e-183 645.6 402 78.6
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 2.5e-183 645.6 392 82.9
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 3.3e-183 645.2 424 74.5
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 9.6e-183 643.7 400 78.2
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 1.2e-182 643.3 401 78.8
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 1.2e-182 643.3 401 78.8
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 1.6e-182 642.9 395 78.2
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.1e-182 642.5 405 77.8
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 2.8e-182 642.1 396 78.0
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.8e-182 642.1 401 77.6
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 3.6e-182 641.7 399 78.2
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 1.1e-181 640.2 398 78.1
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 1.1e-181 640.2 401 77.3
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 1.4e-181 639.8 397 79.1
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 5.3e-181 637.9 414 77.1
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 6.9e-181 637.5 399 77.4
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 1.2e-180 636.7 400 78.2
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 1.2e-180 636.7 400 78.2
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 1.5e-180 636.3 398 77.1
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 4.4e-180 634.8 432 72.7
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.9e-179 632.1 399 77.7
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 6.4e-179 630.9 401 77.1
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 8.4e-179 630.6 391 78.3
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.1e-178 630.2 398 77.4
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.9e-178 629.4 388 79.1
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.9e-178 629.4 403 75.4
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 3.2e-178 628.6 392 80.9
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 5.4e-178 627.9 401 74.8
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 9.3e-178 627.1 419 71.6
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 1.2e-177 626.7 398 76.9
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 1.2e-177 626.7 410 75.6
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 3.5e-177 625.2 400 75.2
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.9e-175 619.4 403 75.7
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 3.3e-175 618.6 403 74.9
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 1.3e-174 616.7 398 75.4
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 2.8e-174 615.5 389 76.9
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 3.6e-174 615.1 410 74.9
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.8e-174 614.8 496 63.9
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 6.2e-174 614.4 394 77.4
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 8.1e-174 614.0 402 74.6
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 4.0e-173 611.7 402 74.4
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 4.5e-172 608.2 403 72.7
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 5.8e-172 607.8 399 73.7
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 9.9e-172 607.1 403 73.0
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 1.3e-171 606.7 399 73.4
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 2.2e-171 605.9 403 72.7
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 6.4e-171 604.4 400 73.2
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 8.4e-171 604.0 399 73.2
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 1.9e-170 602.8 383 75.5
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 1.9e-170 602.8 399 73.2
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 5.4e-170 601.3 383 75.2
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 7.1e-170 600.9 399 72.7
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 9.3e-170 600.5 399 72.9
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 1.2e-169 600.1 399 72.7
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 1.2e-169 600.1 399 72.7
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 2.1e-169 599.4 398 72.6
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 4.6e-169 598.2 403 71.2
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 7.9e-169 597.4 405 72.8
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 1.0e-168 597.0 382 74.6
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.3e-168 596.7 399 72.2
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 3.0e-168 595.5 398 72.1
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 3.9e-168 595.1 398 72.1
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 1.1e-167 593.6 399 71.7
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 2.5e-167 592.4 391 73.7
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 7.4e-167 590.9 366 79.0
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 9.6e-167 590.5 382 73.8
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.3e-166 590.1 443 67.7
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 2.1e-166 589.3 362 78.2
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 3.7e-166 588.6 391 72.6
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 4.0e-165 585.1 442 67.6
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 9.0e-165 583.9 400 73.0
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 2.6e-164 582.4 553 57.1
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.4e-164 582.0 452 67.9
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 5.3e-157 558.1 398 68.3
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 9.0e-157 557.4 351 77.5
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 1.2e-156 557.0 399 68.9
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 8.5e-147 524.2 327 79.5
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 2.3e-144 516.2 311 79.1
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 1.7e-139 500.0 292 81.2
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 3.3e-135 485.7 312 77.2
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 3.1e-133 479.2 316 75.9
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.7e-123 446.8 350 67.7
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 9.1e-117 424.5 351 59.0
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 1.9e-114 416.8 342 59.1
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 2.7e-113 412.9 364 53.8
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 2.3e-112 409.8 260 76.9
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 3.0e-112 409.5 344 56.1
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 2.9e-99 366.3 349 52.1
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.5e-95 354.0 235 76.6
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 4.0e-88 329.3 226 72.1
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 6.8e-80 302.0 284 49.3
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 1.3e-78 297.7 334 45.2
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 8.1e-65 251.9 364 38.2
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 4.6e-60 236.1 206 62.1
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 6.0e-60 235.7 335 40.9
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 6.0e-60 235.7 228 57.0
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 9.0e-56 221.9 268 48.1
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.7e-54 217.6 171 65.5
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.0e-39 167.5 98 80.6
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.9e-29 134.4 132 56.8
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.2e-29 133.3 81 79.0
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 3.6e-28 130.2 78 76.9
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 4.6e-28 129.8 80 76.2
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 2.1e-20 104.4 105 51.4
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 7.9e-20 102.4 65 72.3
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 7.4e-18 95.9 75 62.7
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 4.0e-11 73.6 53 67.9
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 8.2e-09 65.9 49 69.4
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 3.1e-08 63.9 50 68.0
arahy.Tifrunner.gnm1.ann1.1Z9DBD Arachis hypogaea HOM05D000380 ORTHO05D002061 4.1e-08 63.5 36 72.2
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 1.0e-06 58.9 37 73.0


User provided reference genes

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