Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0006855 Lotus japonicus HOM05D006579 ORTHO05D007783 8.6e-149 530.4 289 100.0
Glyma.02G006400 Glycine max HOM05D006579 ORTHO05D007783 1.2e-129 466.8 290 89.7
Lalb_Chr06g0167181 Lupinus albus HOM05D006579 ORTHO05D007783 9.3e-119 430.6 289 82.7
Ca_10226_v3 Cicer arietinum L. HOM05D006579 ORTHO05D007783 4.6e-118 428.3 290 83.1
Phvul.007G207700 Phaseolus vulgaris HOM05D006579 ORTHO05D007783 5.1e-117 424.9 291 83.5
Lalb_Chr21g0309921 Lupinus albus HOM05D006579 ORTHO05D007783 4.3e-116 421.8 289 82.4
Psat6g157680 Pisum sativum HOM05D006579 ORTHO05D007783 2.1e-115 419.5 293 81.9
arahy.Tifrunner.gnm1.ann1.3317JQ Arachis hypogaea HOM05D006579 ORTHO05D007783 2.8e-115 419.1 275 85.5
Glyma.10G140000 Glycine max HOM05D006579 ORTHO05D007783 5.3e-114 414.8 250 90.4
arahy.Tifrunner.gnm1.ann1.E1WP71 Arachis hypogaea HOM05D006579 ORTHO05D007783 2.6e-113 412.5 250 89.6
VMungo0720G0607 Vigna mungo HOM05D006579 ORTHO05D007783 3.4e-113 412.1 251 88.8
TPR.G3075 Trifolium pratense HOM05D006579 ORTHO05D007783 9.6e-108 394.0 294 78.6
Medtr1g085470 Medicago truncatula HOM05D006579 ORTHO05D007783 2.6e-105 386.0 293 77.5
Duzib138G1509 Durio zibethinus HOM05D006579 ORTHO05D007783 3.7e-99 365.5 283 75.6
Cfa004929 Carpinus fangiana HOM05D006579 ORTHO05D007783 4.8e-99 365.2 301 71.4
Thecc.01G328000 Theobroma cacao HOM05D006579 ORTHO05D007783 6.2e-99 364.8 283 74.9
Potri.014G110200 Populus trichocarpa HOM05D006579 ORTHO05D007783 3.1e-98 362.5 284 75.4
Ciclev10021552m.g Citrus clementina HOM05D006579 ORTHO05D007783 4.0e-98 362.1 250 81.2
Gohir.D11G111000 Gossypium hirsutum HOM05D006579 ORTHO05D007783 2.6e-97 359.4 284 73.6
Gorai.007G118800 Gossypium raimondii HOM05D006579 ORTHO05D007783 1.0e-96 357.5 284 73.2
Gohir.A11G106100 Gossypium hirsutum HOM05D006579 ORTHO05D007783 4.2e-95 352.1 284 72.9
MBI15_g35678_MAGBIO Magnolia biondii HOM05D006579 ORTHO05D007783 5.5e-95 351.7 282 73.0
Nn8g39570 Nelumbo nucifera HOM05D006579 ORTHO05D007783 2.1e-94 349.7 283 71.7
Dinv33186 Davidia involucrata HOM05D006579 ORTHO05D007783 2.7e-94 349.4 255 77.3
Eucgr.A00989 Eucalyptus grandis HOM05D006579 ORTHO05D007783 2.7e-94 349.4 285 70.5
PGR042G1939 Punica granatum HOM05D006579 ORTHO05D007783 1.0e-93 347.4 288 70.1
CiPaw.07G127500 Carya illinoinensis HOM05D006579 ORTHO05D007783 1.8e-93 346.7 303 68.3
Manes.14G164500 Manihot esculenta HOM05D006579 ORTHO05D007783 1.8e-93 346.7 282 72.0
COL.COLO4_23096 Corchorus olitorius HOM05D006579 ORTHO05D007783 5.1e-93 345.1 283 72.8
MD17G1285900 Malus domestica HOM05D006579 ORTHO05D007783 5.1e-93 345.1 309 66.0
GSVIVG01028219001 Vitis vinifera HOM05D006579 ORTHO05D007783 1.9e-92 343.2 285 70.2
Sabra14G0081200 Salix brachista HOM05D006579 ORTHO05D007783 5.7e-92 341.7 315 67.0
Cpa.g.sc57.48 Carica papaya HOM05D006579 ORTHO05D007783 1.6e-91 340.1 282 71.6
Nitab4.5_0002103g0080 Nicotiana tabacum HOM05D006579 ORTHO05D007783 3.7e-91 339.0 293 67.6
MELO3C005183.2 Cucumis melo HOM05D006579 ORTHO05D007783 6.3e-91 338.2 308 65.6
CANSAT25G2874 Cannabis sativa HOM05D006579 ORTHO05D007783 1.8e-90 336.7 303 67.3
QL09p037462 Quercus lobata HOM05D006579 ORTHO05D007783 3.1e-90 335.9 271 71.2
TWI23G0058 Tripterygium wilfordii HOM05D006579 ORTHO05D007783 3.1e-90 335.9 282 68.8
ATR0796G267 Amborella trichopoda HOM05D006579 ORTHO05D007783 9.0e-90 334.3 280 70.0
PSO210G5405 Papaver somniferum HOM05D006579 ORTHO05D007783 9.0e-90 334.3 250 74.0
Nitab4.5_0001628g0050 Nicotiana tabacum HOM05D006579 ORTHO05D007783 1.2e-89 334.0 293 66.9
THA.LOC104825921 Tarenaya hassleriana HOM05D006579 ORTHO05D007783 1.2e-89 334.0 284 68.7
Prupe.3G000500 Prunus persica HOM05D006579 ORTHO05D007783 1.5e-89 333.6 312 65.4
Aqoxy2G02395 Aquilegia oxysepala HOM05D006579 ORTHO05D007783 7.7e-89 331.3 289 69.6
PSO761G0510 Papaver somniferum HOM05D006579 ORTHO05D007783 1.0e-88 330.9 250 73.2
TAR362G0572 Trochodendron aralioides HOM05D006579 ORTHO05D007783 1.0e-88 330.9 281 70.8
Hund07814 Selenicereus undatus HOM05D006579 ORTHO05D007783 2.2e-88 329.7 280 68.6
Carub.0001s0137 Capsella rubella HOM05D006579 ORTHO05D007783 3.8e-88 328.9 284 69.0
Cc06_g22680 Coffea canephora HOM05D006579 ORTHO05D007783 5.0e-88 328.6 287 67.6
ClCG01G007260 Citrullus lanatus HOM05D006579 ORTHO05D007783 6.5e-88 328.2 308 64.3
Oeu038082.1 Olea europaea HOM05D006579 ORTHO05D007783 8.5e-88 327.8 293 66.2
Solyc01g068580.4 Solanum lycopersicum HOM05D006579 ORTHO05D007783 8.5e-88 327.8 299 65.2
Atru.chr5.832 Acer truncatum HOM05D006579 ORTHO05D007783 1.6e-86 323.6 250 75.6
Sp1g01410 Schrenkiella parvula HOM05D006579 ORTHO05D007783 1.6e-86 323.6 251 72.9
CAN.G179.22 Capsicum annuum HOM05D006579 ORTHO05D007783 6.1e-86 321.6 289 66.8
FvH4_1g26040 Fragaria vesca HOM05D006579 ORTHO05D007783 1.0e-85 320.9 282 67.4
FAN19G0998 Fragaria x ananassa HOM05D006579 ORTHO05D007783 1.0e-85 320.9 282 67.4
RcHm_v2.0_Chr3g0485501 Rosa chinensis HOM05D006579 ORTHO05D007783 1.0e-85 320.9 313 61.7
DCAR_018237 Daucus carota HOM05D006579 ORTHO05D007783 1.4e-85 320.5 289 66.4
ECA248G0873 Erigeron canadensis HOM05D006579 ORTHO05D007783 1.4e-85 320.5 293 64.2
Sed0009510 Sechium edule HOM05D006579 ORTHO05D007783 1.4e-85 320.5 304 65.1
Sopen01g030530 Solanum pennellii HOM05D006579 ORTHO05D007783 1.4e-85 320.5 292 65.8
CARHR001640 Cardamine hirsuta HOM05D006579 ORTHO05D007783 2.3e-85 319.7 284 66.9
CsaV3_5G018690 Cucumis sativus L. HOM05D006579 ORTHO05D007783 3.9e-85 318.9 308 63.6
EL10Ac9g20927 Beta vulgaris HOM05D006579 ORTHO05D007783 1.1e-84 317.4 280 67.1
FAN28G1483 Fragaria x ananassa HOM05D006579 ORTHO05D007783 1.5e-84 317.0 282 66.7
HanXRQChr01g0017841 Helianthus annuus HOM05D006579 ORTHO05D007783 1.5e-84 317.0 297 64.0
CSS0004948 Camellia sinensis var. sinensis HOM05D006579 ORTHO05D007783 3.3e-84 315.8 213 80.8
SalBow3G0048 Salvia bowleyana HOM05D006579 ORTHO05D007783 5.7e-84 315.1 286 65.0
AL1G11660 Arabidopsis lyrata HOM05D006579 ORTHO05D007783 2.2e-83 313.2 284 66.9
Thhalv10008452m.g Eutrema salsugineum HOM05D006579 ORTHO05D007783 2.2e-83 313.2 250 71.2
Peaxi162Scf00309g00059 Petunia axillaris HOM05D006579 ORTHO05D007783 6.3e-83 311.6 215 78.1
FAN23G1885 Fragaria x ananassa HOM05D006579 ORTHO05D007783 8.2e-83 311.2 286 65.7
FAN23G2819 Fragaria x ananassa HOM05D006579 ORTHO05D007783 8.2e-83 311.2 286 65.7
AT1G02330 Arabidopsis thaliana HOM05D006579 ORTHO05D007783 1.1e-82 310.8 285 67.0
Aa31LG1G10170 Aethionema arabicum HOM05D006579 ORTHO05D007783 1.4e-82 310.5 281 65.5
BcaC05g24612 Brassica carinata HOM05D006579 ORTHO05D007783 4.1e-82 308.9 282 65.2
C05p01100 Brassica napus HOM05D006579 ORTHO05D007783 4.1e-82 308.9 282 65.2
BolC5t28891H Brassica oleracea HOM05D006579 ORTHO05D007783 1.5e-81 307.0 282 64.9
FAN26G1368 Fragaria x ananassa HOM05D006579 ORTHO05D007783 1.0e-80 304.3 311 60.8
BraA10t42384Z Brassica rapa HOM05D006579 ORTHO05D007783 1.7e-80 303.5 284 64.4
HPP92_026046 Vanilla planifolia HOM05D006579 ORTHO05D007783 5.0e-80 302.0 280 66.4
PGSC0003DMG400000840 Solanum tuberosum HOM05D006579 ORTHO05D007783 1.9e-79 300.1 328 57.6
AUR62037602 Chenopodium quinoa HOM05D006579 ORTHO05D007783 2.5e-79 299.7 280 64.3
Sc12g0008270 Simmondsia chinensis HOM05D006579 ORTHO05D007783 7.9e-78 294.7 280 63.9
Lsat_1_v5_gn_1_78561 Lactuca sativa HOM05D006579 ORTHO05D007783 6.7e-77 291.6 282 62.1
Hma1.2p1_1372F.1_g278650 Hydrangea macrophylla HOM05D006579 ORTHO05D007783 4.1e-74 282.3 183 84.7
Migut.D00005 Erythranthe guttata HOM05D006579 ORTHO05D007783 4.2e-71 272.3 293 58.4
Mapoly0012s0210 Marchantia polymorpha HOM05D006579 ORTHO05D007783 5.5e-71 271.9 291 60.8
SGA_v2.0_scaffold417G51243 Striga asiatica HOM05D006579 ORTHO05D007783 1.6e-70 270.4 317 55.5
Pp3c6_17910 Physcomitrium patens HOM05D006579 ORTHO05D007783 1.0e-69 267.7 286 59.8
Os03g0374100 Oryza sativa ssp. japonica HOM05D006579 ORTHO05D007783 3.9e-69 265.8 289 57.4
CSS0018503 Camellia sinensis var. sinensis HOM05D006579 ORTHO05D007783 1.5e-68 263.8 176 80.7
MSTRG.18055 Avicennia marina HOM05D006579 ORTHO05D007783 4.4e-68 262.3 295 57.6
Actinidia21333 Actinidia chinensis HOM05D006579 ORTHO05D007783 1.3e-67 260.8 264 61.0
Zm00001eb018120 Zea mays HOM05D006579 ORTHO05D007783 3.7e-67 259.2 285 57.9
AagrBONN_evm.TU.Sc2ySwM_117.1030 Anthoceros agrestis HOM05D006579 ORTHO05D007783 2.4e-66 256.5 255 62.0
Rhsim01G0001200 Rhododendron simsii HOM05D006579 ORTHO05D007783 3.1e-66 256.1 176 81.8
Ah.01g015750 Amaranthus hybridus HOM05D006579 ORTHO05D007783 3.5e-65 252.7 405 46.7
Pp3c5_5390 Physcomitrium patens HOM05D006579 ORTHO05D007783 6.5e-64 248.4 288 56.6
SHI19775 Sapria himalayana HOM05D006579 ORTHO05D007783 8.8e-61 238.0 293 53.2
unitig_747.g21528 Utricularia gibba HOM05D006579 ORTHO05D007783 8.5e-56 221.5 293 53.2
vmacro02350 Vaccinium macrocarpon HOM05D006579 ORTHO05D007783 8.3e-51 204.9 136 83.8
CBR_g3462 Chara braunii HOM05D006579 ORTHO05D007783 2.3e-48 196.8 224 54.9
Lju2566A1G36 Lonicera japonica HOM05D006579 ORTHO05D007783 5.2e-45 185.7 159 68.6
HPP92_013492 Vanilla planifolia HOM05D006579 ORTHO05D007783 3.5e-41 172.9 170 64.1
HanXRQChr09g0263751 Helianthus annuus HOM05D006579 ORTHO05D007783 8.6e-40 168.3 182 57.1
SEGI_25815 Sequoiadendron giganteum HOM05D006579 ORTHO05D007783 1.1e-39 167.9 135 70.4
Haze_05169 Corylus avellana HOM05D006579 ORTHO05D007783 5.4e-34 149.1 167 58.7
SMO367G0899 Selaginella moellendorffii HOM05D006579 ORTHO05D007783 9.2e-34 148.3 139 62.6
AUR62039016 Chenopodium quinoa HOM05D006579 ORTHO05D007783 6.2e-30 135.6 145 57.9
Cc00_g21250 Coffea canephora HOM05D006579 ORTHO05D007783 7.5e-28 128.6 78 84.6
SEGI_10424 Sequoiadendron giganteum HOM05D006579 ORTHO05D007783 8.1e-22 108.6 147 50.3
vmacro02349 Vaccinium macrocarpon HOM05D006579 ORTHO05D007783 2.3e-16 90.5 109 56.9
Rhsim01G0001100 Rhododendron simsii HOM05D006579 ORTHO05D007783 1.5e-15 87.8 115 53.0
COL.COLO4_00282 Corchorus olitorius HOM05D006579 ORTHO05D007783 4.3e-15 86.3 106 56.6
MCO04G420 Micromonas commoda HOM05D006579 ORTHO05D007783 5.2e-13 79.3 176 35.8
Lju2566A1T41 Lonicera japonica HOM05D006579 ORTHO05D007783 2.7e-09 67.0 42 76.2
BcaB03g13515 Brassica carinata HOM05D006579 ORTHO05D007783 3.9e-08 63.2 72 56.9
Lju2566A1T42 Lonicera japonica HOM05D006579 ORTHO05D007783 6.2e-06 55.8 113 42.5
Cre10.g423350 Chlamydomonas reinhardtii HOM05D006579 ORTHO05D007783 8.1e-06 55.5 195 30.3


User provided reference genes

Program Settings