Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.0e-88 330.1 169 100.0
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 2.2e-64 249.2 166 79.5
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 5.0e-64 248.1 156 84.6
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 2.5e-63 245.7 176 77.3
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 2.1e-62 242.7 158 80.4
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 2.1e-62 242.7 158 80.4
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.7e-62 242.3 163 76.7
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 3.0e-61 238.8 167 77.8
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 6.7e-61 237.7 174 74.7
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 8.8e-61 237.3 176 75.6
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 1.8e-58 229.6 170 70.6
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.8e-58 229.6 169 71.0
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 2.4e-58 229.2 168 74.4
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 1.6e-57 226.5 168 69.6
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 2.6e-57 225.7 163 72.4
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 7.7e-57 224.2 171 69.0
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 5.0e-56 221.5 171 69.6
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.0e-56 221.5 171 69.6
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 5.0e-56 221.5 173 69.4
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 8.5e-56 220.7 168 69.0
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.5e-55 219.9 171 69.0
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.9e-55 219.5 156 69.9
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 2.5e-55 219.2 174 64.9
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.5e-55 219.2 171 69.6
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 3.2e-55 218.8 173 67.6
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 4.2e-55 218.4 154 74.7
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 7.2e-55 217.6 165 67.9
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 7.2e-55 217.6 168 69.6
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 1.6e-54 216.5 171 66.1
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 2.7e-54 215.7 167 70.1
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 2.7e-54 215.7 168 72.0
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 3.6e-54 215.3 165 67.3
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 4.7e-54 214.9 175 68.6
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 8.0e-54 214.2 168 67.9
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 6.7e-53 211.1 177 64.4
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 6.7e-53 211.1 178 66.3
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 2.0e-52 209.5 168 69.0
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 3.3e-52 208.8 173 65.3
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 4.4e-52 208.4 166 64.5
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 4.4e-52 208.4 166 60.2
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 5.7e-52 208.0 173 65.3
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 9.7e-52 207.2 143 73.4
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 2.2e-51 206.1 151 64.2
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.8e-50 203.0 173 64.2
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 1.8e-50 203.0 156 64.7
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 5.3e-50 201.4 175 62.3
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 5.3e-50 201.4 165 66.7
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 9.1e-50 200.7 173 59.0
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 9.1e-50 200.7 168 63.1
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.2e-49 200.3 170 62.4
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 1.6e-49 199.9 167 64.7
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 3.5e-49 198.7 151 60.3
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 5.9e-49 198.0 152 68.4
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 7.7e-49 197.6 168 63.1
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 1.0e-48 197.2 172 57.6
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 2.2e-48 196.1 233 51.9
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.2e-48 196.1 173 59.0
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 2.9e-48 195.7 151 60.3
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 3.8e-48 195.3 169 61.5
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.1e-47 193.7 167 62.3
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.9e-47 193.0 169 61.5
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.9e-47 193.0 153 65.4
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 2.5e-47 192.6 169 59.8
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 3.2e-47 192.2 197 55.8
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 5.5e-47 191.4 170 58.8
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 7.2e-47 191.0 146 65.8
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 7.2e-47 191.0 165 60.6
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 9.4e-47 190.7 173 57.8
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.2e-46 190.3 179 57.5
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 2.1e-46 189.5 164 60.4
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 2.7e-46 189.1 144 63.2
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 8.0e-46 187.6 140 66.4
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 8.0e-46 187.6 146 64.4
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.8e-45 186.4 143 63.6
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.8e-45 186.4 145 64.1
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 4.0e-45 185.3 171 57.3
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 4.0e-45 185.3 171 57.3
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 4.0e-45 185.3 168 57.1
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 5.2e-45 184.9 168 59.5
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 1.2e-44 183.7 171 56.7
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 1.2e-44 183.7 166 56.6
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 2.0e-44 183.0 270 45.2
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 2.6e-44 182.6 155 65.2
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 3.4e-44 182.2 166 56.0
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 3.4e-44 182.2 143 62.2
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 5.7e-44 181.4 171 56.1
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 7.5e-44 181.0 173 56.1
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 7.5e-44 181.0 169 58.6
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 1.7e-43 179.9 141 62.4
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 1.7e-43 179.9 141 62.4
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.8e-43 179.1 177 56.5
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 3.7e-43 178.7 120 71.7
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 6.3e-43 177.9 167 58.1
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 8.3e-43 177.6 166 56.0
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 1.1e-42 177.2 166 56.0
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 1.4e-42 176.8 140 62.9
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 1.8e-42 176.4 149 63.8
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 4.1e-42 175.3 150 60.0
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 9.1e-42 174.1 165 57.6
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 4.5e-41 171.8 166 57.2
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 5.9e-41 171.4 170 55.9
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 1.3e-40 170.2 172 56.4
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 6.6e-40 167.9 146 58.9
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 8.6e-40 167.5 118 66.1
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 2.5e-39 166.0 168 57.1
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 3.3e-39 165.6 170 54.7
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.0e-37 160.6 169 52.1
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 5.2e-37 158.3 168 53.0
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 1.2e-36 157.1 120 61.7
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 1.2e-36 157.1 224 42.4
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.5e-36 156.8 134 59.0
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 2.8e-35 152.5 144 56.2
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 4.1e-34 148.7 144 54.9
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 1.7e-32 143.3 117 61.5
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 2.3e-32 142.9 120 60.0
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.9e-32 142.1 118 55.1
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 8.6e-32 141.0 154 52.6
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 1.6e-30 136.7 166 50.0
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.1e-30 136.3 149 49.0
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.1e-30 136.3 149 49.0
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 5.2e-29 131.7 264 34.1
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.2e-28 130.6 148 46.6
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 3.4e-28 129.0 116 60.3
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 9.8e-28 127.5 159 44.0
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.2e-27 126.3 139 49.6
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 1.0e-24 117.5 128 53.1
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 1.0e-24 117.5 128 53.1
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.3e-24 116.3 98 54.1
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 1.2e-22 110.5 192 39.1
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.1e-21 107.5 134 44.0
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 8.9e-21 104.4 117 51.3
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 5.8e-20 101.7 103 51.5
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 6.4e-19 98.2 81 65.4
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 9.2e-18 94.4 168 39.9
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 3.9e-16 89.0 115 49.6
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 5.6e-15 85.1 88 51.1
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 1.2e-14 84.0 88 51.1
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 4.7e-14 82.0 88 51.1
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 4.7e-14 82.0 88 51.1
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 6.8e-13 78.2 88 47.7
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 5.8e-12 75.1 84 47.6
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 5.8e-12 75.1 84 47.6
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 2.7e-09 66.2 48 62.5
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 2.5e-07 59.7 58 58.6
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 3.6e-06 55.8 65 52.3
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 8.1e-06 54.7 44 56.8


User provided reference genes

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