Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 1.7e-105 386.0 191 100.0
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 4.0e-102 374.8 190 96.8
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 7.3e-96 354.0 191 91.1
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 4.7e-95 351.3 191 90.6
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 8.3e-92 340.5 191 88.0
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 8.3e-92 340.5 191 88.0
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 2.4e-91 339.0 190 86.3
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 2.7e-90 335.5 190 85.8
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 3.5e-90 335.1 191 86.9
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 6.0e-90 334.3 191 85.3
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 1.1e-88 330.1 191 85.9
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 1.6e-87 326.2 192 81.8
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 3.1e-86 322.0 190 82.1
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 5.2e-86 321.2 191 82.7
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 3.4e-85 318.5 190 80.5
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 9.9e-85 317.0 191 81.7
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 1.3e-84 316.6 191 80.1
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 8.4e-84 313.9 190 79.5
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 8.4e-84 313.9 190 82.1
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 1.1e-83 313.5 189 81.5
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 2.4e-83 312.4 190 80.0
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 2.4e-83 312.4 191 81.7
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 4.1e-83 311.6 190 80.0
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 4.1e-83 311.6 191 78.5
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 5.4e-83 311.2 190 78.9
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 1.2e-82 310.1 171 89.5
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 4.6e-82 308.1 190 77.4
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 6.0e-82 307.8 190 77.9
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.7e-81 306.2 190 78.9
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 1.7e-81 306.2 171 87.1
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 3.0e-81 305.4 188 78.2
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 3.9e-81 305.1 190 78.9
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 5.1e-81 304.7 190 78.9
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 6.6e-81 304.3 190 77.4
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 6.6e-81 304.3 188 79.3
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 8.6e-81 303.9 191 74.9
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.1e-80 303.5 191 79.1
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.5e-80 302.4 186 80.1
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.5e-80 302.4 186 80.1
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 3.3e-80 302.0 189 77.8
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 3.3e-80 302.0 189 78.3
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 5.6e-80 301.2 190 77.9
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 5.6e-80 301.2 190 78.4
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 5.6e-80 301.2 186 80.1
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 7.3e-80 300.8 169 87.0
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 1.2e-79 300.1 187 78.6
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.2e-79 300.1 188 77.7
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 2.1e-79 299.3 190 77.9
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.6e-79 298.5 190 77.9
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 1.8e-78 296.2 186 79.6
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 5.2e-78 294.7 190 77.4
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 5.2e-78 294.7 192 75.5
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 8.9e-78 293.9 190 75.3
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 1.2e-77 293.5 192 76.0
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.2e-77 293.5 193 76.7
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.0e-77 292.7 170 84.1
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 2.6e-77 292.4 187 79.7
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 2.6e-77 292.4 190 75.8
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 2.6e-77 292.4 184 78.8
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 3.4e-77 292.0 190 76.3
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 9.9e-77 290.4 182 78.0
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 1.7e-76 289.7 192 74.5
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.9e-76 288.9 187 75.9
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 2.9e-76 288.9 188 77.7
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 8.4e-76 287.3 191 73.3
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 8.4e-76 287.3 183 77.6
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 1.1e-75 287.0 192 74.0
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 2.4e-75 285.8 192 71.9
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 4.2e-75 285.0 187 76.5
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 4.2e-75 285.0 178 79.2
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 2.1e-74 282.7 192 72.9
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 1.7e-73 279.6 170 81.8
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 2.3e-73 279.3 193 73.1
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 3.0e-73 278.9 161 82.6
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 3.0e-73 278.9 188 71.8
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 5.1e-73 278.1 190 72.6
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 5.1e-73 278.1 184 73.9
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.9e-72 276.2 186 72.6
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 1.9e-72 276.2 193 72.0
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 1.6e-71 273.1 201 70.6
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.6e-71 273.1 170 80.6
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.8e-71 272.3 191 71.2
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 2.8e-71 272.3 176 75.6
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 4.8e-71 271.6 188 72.9
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 6.2e-71 271.2 167 78.4
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 6.2e-71 271.2 188 70.2
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 6.2e-71 271.2 186 73.7
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.1e-70 270.4 203 69.0
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.1e-70 270.4 171 78.4
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.4e-70 270.0 186 76.3
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 1.4e-70 270.0 177 78.5
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 4.0e-70 268.5 169 81.7
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 9.0e-70 267.3 174 76.4
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 1.5e-69 266.5 167 77.8
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 4.5e-69 265.0 183 71.0
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 2.9e-68 262.3 170 78.2
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 3.8e-68 261.9 190 66.3
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 8.4e-68 260.8 185 69.7
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.9e-67 259.6 189 66.7
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 2.4e-67 259.2 174 74.1
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.2e-66 256.9 137 89.8
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 6.0e-66 254.6 167 75.4
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 6.0e-66 254.6 190 65.3
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 1.3e-65 253.4 190 64.7
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 3.0e-65 252.3 137 89.8
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 5.1e-65 251.5 166 72.9
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 8.7e-65 250.8 192 67.2
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.5e-64 250.0 169 74.0
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 5.6e-64 248.1 164 70.7
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 9.6e-64 247.3 170 73.5
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 9.6e-64 247.3 170 73.5
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 9.6e-64 247.3 177 69.5
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.8e-62 243.0 190 64.2
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 2.4e-62 242.7 190 63.2
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 1.2e-61 240.4 191 66.5
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 1.5e-61 240.0 189 60.8
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.5e-61 240.0 186 67.2
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.8e-60 235.3 170 70.6
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.2e-59 232.3 193 64.8
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.0e-57 227.3 191 61.8
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 4.3e-56 221.9 188 56.4
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 9.0e-54 214.2 187 57.8
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 4.5e-53 211.8 133 77.4
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 4.5e-53 211.8 125 82.4
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.2e-51 205.7 186 61.3
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 4.2e-51 205.3 118 85.6
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.6e-50 203.4 189 55.0
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 6.0e-50 201.4 116 85.3
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 1.5e-45 186.8 186 54.3
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 2.0e-45 186.4 133 67.7
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.8e-41 173.3 169 56.2
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.9e-40 169.9 183 47.5
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 1.1e-38 164.1 171 55.0
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 6.1e-26 121.7 117 57.3
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 6.1e-18 95.1 60 75.0
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 4.4e-16 89.0 58 74.1
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 1.6e-13 80.5 166 39.2
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 8.5e-12 74.7 51 68.6
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 6.1e-10 68.6 56 58.9
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 2.3e-09 66.6 180 29.4
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 5.2e-09 65.5 171 27.5
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 6.8e-09 65.1 168 31.5
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 1.2e-08 64.3 178 30.9
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.0e-08 63.5 173 30.6
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 2.6e-08 63.2 171 29.8
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 2.6e-08 63.2 172 30.8
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 9.8e-08 61.2 173 28.3
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 1.3e-07 60.8 173 29.5
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.3e-07 60.8 168 28.6
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 2.2e-07 60.1 34 73.5
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.8e-07 59.7 149 28.9
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 2.8e-07 59.7 168 28.0
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 3.7e-07 59.3 170 29.4
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 3.7e-07 59.3 168 28.0
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 3.7e-07 59.3 166 29.5
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 4.8e-07 58.9 171 28.1
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 4.8e-07 58.9 169 26.6
arahy.Tifrunner.gnm1.ann1.K04B1Q Arachis hypogaea HOM05D006661 ORTHO05D008369 8.3e-07 58.2 33 72.7
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 8.3e-07 58.2 171 26.3
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 8.3e-07 58.2 172 27.9
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 8.3e-07 58.2 172 27.9
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 1.1e-06 57.8 171 28.7
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.1e-06 57.8 183 27.9
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.1e-06 57.8 171 28.1
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 1.8e-06 57.0 173 25.4
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 1.8e-06 57.0 173 25.4
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 1.8e-06 57.0 181 27.6
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 1.8e-06 57.0 168 27.4
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 2.4e-06 56.6 182 28.0
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 2.4e-06 56.6 182 28.0
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 3.1e-06 56.2 32 71.9
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 3.1e-06 56.2 173 25.4
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 3.1e-06 56.2 173 25.4
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 4.1e-06 55.8 171 27.5
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 4.1e-06 55.8 182 28.0
arahy.Tifrunner.gnm1.ann1.XSX4PG Arachis hypogaea HOM05D006661 ORTHO05D008369 7.0e-06 55.1 43 53.5
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 7.0e-06 55.1 170 25.9
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 7.0e-06 55.1 170 25.9
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 7.0e-06 55.1 171 28.1
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 7.0e-06 55.1 173 25.4
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 9.1e-06 54.7 166 28.3
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 9.1e-06 54.7 172 28.5
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 9.1e-06 54.7 168 28.6


User provided reference genes

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