Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 2.3e-193 678.7 339 100.0
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 8.3e-143 510.8 339 74.3
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 1.8e-142 509.6 343 75.2
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 4.5e-141 505.0 316 76.3
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 5.5e-139 498.0 315 77.1
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 1.6e-138 496.5 314 77.4
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 1.6e-138 496.5 340 71.8
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 2.1e-138 496.1 338 74.6
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 4.0e-137 491.9 331 76.7
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 5.7e-136 488.0 314 76.1
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 4.6e-117 425.2 313 64.5
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 1.1e-115 420.6 314 68.2
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 5.6e-115 418.3 312 64.1
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 7.3e-115 417.9 312 64.7
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 3.6e-114 415.6 312 63.8
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 6.2e-114 414.8 312 64.7
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 3.1e-113 412.5 306 67.6
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 4.4e-112 408.7 312 62.5
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 1.3e-111 407.1 317 62.8
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 2.2e-111 406.4 310 64.2
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 3.7e-111 405.6 324 62.0
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 6.4e-111 404.8 308 66.2
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 1.1e-110 404.1 312 62.8
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 2.4e-110 402.9 314 60.8
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 7.1e-110 401.4 305 63.6
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 9.2e-110 401.0 314 60.8
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 1.2e-109 400.6 309 64.4
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 4.6e-109 398.7 302 66.2
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 3.0e-108 396.0 314 60.5
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 3.9e-108 395.6 301 62.5
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 3.9e-108 395.6 334 59.3
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 5.1e-108 395.2 312 64.7
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 1.1e-107 394.0 308 61.7
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 1.5e-107 393.7 309 62.5
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 1.9e-107 393.3 312 61.9
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 2.5e-107 392.9 309 62.1
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 2.1e-106 389.8 309 63.8
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 1.8e-105 386.7 310 62.3
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 3.1e-105 386.0 306 59.5
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 5.2e-105 385.2 319 56.7
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 6.8e-105 384.8 309 62.1
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 1.5e-104 383.6 329 58.1
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 3.4e-104 382.5 307 58.3
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 2.2e-103 379.8 259 76.1
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 6.4e-103 378.3 327 56.6
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 1.9e-102 376.7 307 57.7
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 3.2e-102 375.9 306 59.8
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 5.4e-102 375.2 306 59.2
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 9.2e-102 374.4 306 59.5
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 2.1e-101 373.2 325 58.5
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 3.5e-101 372.5 306 58.5
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 7.8e-101 371.3 309 60.5
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 7.8e-101 371.3 306 59.2
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 7.8e-101 371.3 306 59.8
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 1.0e-100 370.9 305 61.0
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.3e-100 370.5 309 60.8
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 3.0e-100 369.4 309 60.5
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 2.5e-99 366.3 293 58.0
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 5.6e-99 365.2 305 59.3
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 9.6e-99 364.4 318 59.1
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 4.7e-98 362.1 308 59.7
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 6.2e-98 361.7 325 56.9
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 8.1e-98 361.3 310 60.3
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 5.3e-97 358.6 293 59.0
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 1.5e-96 357.1 309 60.2
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 1.5e-96 357.1 309 60.2
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 9.9e-96 354.4 297 59.3
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 2.2e-95 353.2 304 58.6
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 8.4e-95 351.3 310 60.0
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 1.4e-94 350.5 310 59.7
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.4e-94 350.5 318 57.5
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 5.4e-94 348.6 316 59.2
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 5.4e-94 348.6 314 54.8
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 2.1e-93 346.7 305 58.0
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 2.7e-93 346.3 305 57.0
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 3.5e-93 345.9 276 63.0
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 4.6e-93 345.5 268 64.6
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 4.8e-90 335.5 275 66.5
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 9.0e-89 331.3 310 56.5
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 9.9e-88 327.8 305 55.1
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 9.3e-86 321.2 276 59.4
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 1.6e-85 320.5 312 53.5
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 2.1e-85 320.1 229 67.2
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 7.9e-85 318.2 304 53.3
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 1.5e-83 313.9 319 51.4
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 1.1e-81 307.8 221 66.1
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.2e-80 304.3 269 59.5
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 2.6e-80 303.1 260 57.7
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 7.6e-80 301.6 319 50.8
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 7.1e-78 295.0 252 54.4
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 5.1e-76 288.9 237 63.7
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 1.9e-75 287.0 270 55.9
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 4.3e-75 285.8 289 54.7
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 5.3e-73 278.9 222 59.5
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 2.7e-69 266.5 271 52.4
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 3.5e-69 266.2 209 57.4
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 1.5e-64 250.8 319 43.3
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 1.9e-62 243.8 309 44.0
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 9.4e-62 241.5 222 53.6
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 2.2e-58 230.3 195 57.4
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 1.8e-57 227.3 304 43.4
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.5e-56 224.2 175 58.3
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 4.5e-56 222.6 320 38.4
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 2.5e-54 216.9 310 42.6
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 7.4e-51 205.3 299 39.1
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 1.3e-50 204.5 231 47.6
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 7.0e-49 198.7 215 47.4
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 9.1e-49 198.4 191 57.1
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 5.5e-46 189.1 156 59.6
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 1.7e-42 177.6 183 48.1
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 8.0e-37 158.7 169 52.7
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 3.0e-36 156.8 228 36.4
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 4.0e-36 156.4 154 55.2
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 2.8e-34 150.2 253 40.3
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 3.7e-34 149.8 105 64.8
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 1.5e-30 137.9 170 45.9
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 8.8e-28 128.6 90 61.1
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 1.7e-26 124.4 73 67.1
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 6.3e-26 122.5 186 38.2
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 2.3e-23 114.0 166 41.6
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 5.5e-22 109.4 179 40.2
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.6e-21 107.8 92 54.3
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 4.7e-21 106.3 92 53.3
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 6.8e-20 102.4 145 40.0
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 1.8e-17 94.4 117 40.2
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 5.4e-17 92.8 201 34.8
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 7.8e-16 89.0 80 47.5
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 1.2e-13 81.6 106 44.3
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 2.6e-11 73.9 37 89.2
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 7.5e-11 72.4 136 35.3


User provided reference genes

Program Settings