Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 0.0e+00 1185.2 607 100.0
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 8.4e-138 495.0 650 49.8
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 4.9e-130 469.2 759 43.7
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 2.5e-129 466.8 640 50.0
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 5.7e-118 429.1 643 47.1
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 1.9e-97 360.9 634 42.7
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 4.7e-96 356.3 660 42.6
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 1.8e-92 344.4 663 41.6
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 9.1e-92 342.0 918 34.0
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 8.3e-77 292.4 603 37.0
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 4.0e-71 273.5 546 39.9
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 1.3e-53 215.3 626 32.7
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.1e-47 195.7 640 29.8
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 8.1e-40 169.5 604 28.0
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 1.4e-39 168.7 654 30.3
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 4.0e-39 167.2 632 28.8
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 5.2e-39 166.8 630 27.5
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 6.8e-39 166.4 647 29.4
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 8.9e-39 166.0 592 29.7
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 1.7e-37 161.8 642 28.8
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 6.4e-37 159.8 652 28.7
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 7.1e-36 156.4 626 27.2
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 3.5e-35 154.1 654 25.4
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 6.0e-35 153.3 609 27.9
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 3.9e-34 150.6 126 61.1
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 8.7e-34 149.4 687 25.5
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 8.7e-34 149.4 678 25.8
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 1.5e-33 148.7 628 29.0
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.9e-33 148.3 627 27.4
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 3.3e-33 147.5 579 28.7
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 3.3e-33 147.5 621 27.7
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 5.6e-33 146.7 622 28.3
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 9.6e-33 146.0 630 27.0
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 6.2e-32 143.3 680 25.1
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 8.1e-32 142.9 466 31.5
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 8.1e-32 142.9 602 29.4
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.8e-31 141.7 640 27.3
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 2.4e-31 141.4 611 26.0
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 3.1e-31 141.0 615 26.5
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 4.0e-31 140.6 611 27.2
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 4.0e-31 140.6 599 27.9
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 6.9e-31 139.8 665 25.1
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 1.2e-30 139.0 625 27.7
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 7.6e-30 136.3 428 31.1
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 1.1e-28 132.5 695 26.2
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 4.2e-28 130.6 501 29.7
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 9.3e-28 129.4 466 28.1
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 1.3e-26 125.6 617 26.9
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 6.6e-26 123.2 637 26.5
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 3.3e-25 120.9 609 26.8
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 4.3e-25 120.6 617 27.1
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 2.1e-24 118.2 86 65.1
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.8e-24 117.9 844 24.2
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 2.8e-24 117.9 830 24.8
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 9.0e-23 112.8 628 26.4
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 2.0e-22 111.7 615 25.5
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 4.9e-21 107.1 603 25.4
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 9.3e-20 102.8 596 24.8
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 4.6e-19 100.5 760 23.6
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 6.0e-19 100.1 622 25.6
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 1.0e-18 99.4 604 23.2
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 2.3e-18 98.2 658 24.5
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 3.9e-18 97.4 185 34.6
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 5.1e-18 97.1 615 25.7
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 7.4e-17 93.2 302 29.8
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 1.3e-16 92.4 431 26.9
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 3.7e-16 90.9 596 23.5
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 3.7e-16 90.9 155 37.4
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 4.0e-15 87.4 612 23.9
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 5.3e-15 87.0 72 55.6
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 6.9e-15 86.7 109 45.9
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 6.9e-15 86.7 581 25.1
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 9.0e-15 86.3 430 24.9
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 1.2e-14 85.9 629 23.5
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 1.2e-14 85.9 79 53.2
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 1.2e-14 85.9 112 41.1
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 3.4e-14 84.3 99 42.4
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 4.5e-14 84.0 70 55.7
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 4.5e-14 84.0 92 46.7
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 7.6e-14 83.2 74 51.4
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 1.3e-13 82.4 105 43.8
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 1.7e-13 82.0 79 50.6
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 1.7e-13 82.0 79 50.6
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 2.2e-13 81.6 79 50.6
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.9e-13 81.3 212 30.2
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 2.9e-13 81.3 93 46.2
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 4.9e-13 80.5 199 27.6
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 6.5e-13 80.1 85 50.6
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 1.1e-12 79.3 583 25.6
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 2.5e-12 78.2 79 48.1
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 2.5e-12 78.2 79 48.1
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 2.5e-12 78.2 75 48.0
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 4.2e-12 77.4 65 56.9
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 5.5e-12 77.0 590 21.7
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 5.5e-12 77.0 84 50.0
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 1.6e-11 75.5 74 44.6
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 1.6e-11 75.5 115 38.3
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 2.1e-11 75.1 67 53.7
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 2.1e-11 75.1 101 37.6
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 2.1e-11 75.1 122 42.6
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 3.5e-11 74.3 66 53.0
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 4.6e-11 73.9 89 43.8
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 1.8e-10 72.0 224 30.4
TPR.G478 Trifolium pratense HOM05D007504 ORTHO05D007629 1.8e-10 72.0 152 39.5
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 2.3e-10 71.6 71 43.7
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 2.3e-10 71.6 775 20.6
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 3.0e-10 71.2 95 38.9
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 3.0e-10 71.2 95 38.9
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 3.0e-10 71.2 95 38.9
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 3.0e-10 71.2 67 47.8
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 5.1e-10 70.5 95 38.9
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 5.1e-10 70.5 67 52.2
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 2.5e-09 68.2 94 39.4
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 4.3e-09 67.4 65 50.8
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 7.4e-09 66.6 47 59.6
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 9.6e-09 66.2 164 31.7
Cpa.g.sc123.15 Carica papaya HOM05D007504 ORTHO05D007629 1.6e-08 65.5 57 59.6
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 1.6e-08 65.5 596 22.7
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 3.7e-08 64.3 88 40.9
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 8.2e-08 63.2 151 29.8
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 3.4e-06 57.8 577 22.4


User provided reference genes

Program Settings