Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 5.8e-261 904.0 586 100.0
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 4.0e-129 466.1 492 77.2
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 1.1e-126 458.0 484 77.9
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 1.3e-124 451.1 488 76.8
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.1e-123 448.0 499 75.2
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 7.9e-117 425.2 564 64.5
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 3.3e-115 419.9 490 74.9
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.8e-113 414.1 551 67.2
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 5.7e-107 392.5 513 69.6
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 2.4e-105 387.1 489 73.0
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 2.5e-102 377.1 494 66.0
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.2e-101 374.8 535 66.2
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 6.3e-98 362.5 490 69.2
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 2.4e-97 360.5 532 66.2
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 4.5e-96 356.3 482 67.4
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.1e-94 351.7 502 62.7
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 3.0e-92 343.6 488 65.8
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.1e-91 341.7 512 65.0
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 2.6e-91 340.5 510 51.2
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 5.7e-91 339.3 513 65.9
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.7e-91 339.3 511 66.3
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 5.7e-91 339.3 509 65.0
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 1.3e-90 338.2 484 63.2
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.8e-90 336.3 516 64.9
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 1.1e-89 335.1 533 62.9
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 1.4e-89 334.7 500 67.0
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 4.1e-89 333.2 525 64.2
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.2e-88 331.6 502 62.0
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 2.0e-88 330.9 523 60.0
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 3.5e-88 330.1 535 62.6
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.7e-87 327.8 538 62.3
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 1.7e-87 327.8 516 58.7
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 3.8e-87 326.6 525 58.1
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 6.5e-87 325.9 516 59.9
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 1.9e-86 324.3 538 62.3
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.6e-85 321.2 499 64.5
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 4.4e-83 313.2 499 63.9
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.1e-81 308.5 419 62.3
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 2.4e-81 307.4 515 55.1
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 9.1e-81 305.4 531 61.2
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.6e-80 304.7 551 60.1
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.0e-80 304.3 469 62.3
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 5.9e-80 302.8 510 60.0
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.8e-79 300.1 428 64.3
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 8.5e-79 298.9 550 59.6
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.5e-78 298.1 522 54.2
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.2e-77 295.0 506 56.3
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 1.2e-77 295.0 505 63.6
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 3.6e-77 293.5 513 60.6
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 3.6e-77 293.5 522 55.2
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.0e-76 292.0 498 62.9
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.3e-76 290.8 545 54.1
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 6.8e-76 289.3 424 67.5
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.5e-75 288.1 548 54.0
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 2.0e-75 287.7 585 52.5
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 2.0e-75 287.7 512 60.9
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 4.4e-75 286.6 522 52.1
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 4.4e-75 286.6 538 57.8
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 9.8e-75 285.4 540 56.9
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 1.3e-74 285.0 498 53.2
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.7e-74 284.6 435 65.7
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 1.7e-74 284.6 551 54.3
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.7e-74 284.6 434 66.8
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 4.8e-74 283.1 554 55.6
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 6.3e-74 282.7 447 61.3
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 8.3e-74 282.3 561 54.7
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 8.3e-74 282.3 561 52.9
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.4e-73 281.6 475 54.3
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 3.1e-73 280.4 406 67.2
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 3.1e-73 280.4 515 56.9
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 4.1e-73 280.0 364 74.5
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 2.7e-72 277.3 404 60.9
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 1.0e-71 275.4 484 52.5
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 1.7e-71 274.6 522 54.2
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.3e-71 274.2 176 81.8
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.3e-71 274.2 499 59.5
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 5.0e-71 273.1 499 57.7
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 1.9e-70 271.2 445 65.8
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 3.3e-70 270.4 473 62.2
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 4.2e-70 270.0 510 60.0
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 7.2e-70 269.2 420 66.9
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 7.2e-70 269.2 463 62.0
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 7.2e-70 269.2 426 66.7
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 2.1e-69 267.7 424 66.7
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 2.1e-69 267.7 415 67.0
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 2.8e-69 267.3 179 74.9
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 4.7e-69 266.5 405 62.2
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 4.7e-69 266.5 532 53.0
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 4.7e-69 266.5 417 66.2
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 6.1e-69 266.2 404 62.1
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 8.0e-69 265.8 570 52.1
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.0e-68 265.4 426 64.6
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.4e-68 265.0 514 48.2
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.8e-68 264.6 515 59.6
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 4.0e-68 263.5 405 63.0
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 2.0e-67 261.2 404 61.4
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 9.8e-67 258.8 517 50.9
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.3e-66 258.5 152 86.2
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 2.8e-66 257.3 542 56.3
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 4.9e-66 256.5 405 62.0
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 6.3e-66 256.1 448 55.8
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 6.3e-66 256.1 546 57.0
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 8.3e-66 255.8 551 42.8
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.8e-65 254.6 418 58.9
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 2.4e-65 254.2 424 61.6
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 3.1e-65 253.8 177 75.7
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 5.4e-65 253.1 407 65.4
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 1.6e-64 251.5 569 47.6
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 2.0e-64 251.1 182 71.4
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 5.9e-64 249.6 135 90.4
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 5.9e-64 249.6 157 81.5
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 7.8e-64 249.2 405 62.0
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 7.8e-64 249.2 169 75.7
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 7.8e-64 249.2 184 70.7
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 1.0e-63 248.8 555 51.9
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.5e-62 245.0 405 61.0
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.5e-62 244.2 172 77.3
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.5e-62 244.2 172 77.3
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 3.3e-62 243.8 169 78.1
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-61 241.9 178 71.3
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-61 241.9 140 85.0
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 3.6e-61 240.4 140 85.0
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 6.1e-61 239.6 171 73.7
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 8.0e-61 239.2 408 40.9
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.8e-60 238.0 502 52.8
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 2.3e-60 237.7 397 61.0
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 6.8e-60 236.1 131 87.8
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-59 235.0 130 88.5
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 2.6e-59 234.2 125 91.2
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.7e-58 231.5 548 53.8
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-58 231.1 405 47.2
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 2.9e-58 230.7 130 86.9
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 2.9e-58 230.7 404 55.9
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 3.2e-57 227.3 122 91.0
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 6.0e-56 223.0 130 83.8
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-55 221.9 161 74.5
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-55 221.9 184 67.9
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 1.9e-54 218.0 132 84.1
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 3.3e-54 217.2 183 66.1
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 4.3e-54 216.9 128 86.7
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 4.3e-54 216.9 128 86.7
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.4e-52 211.8 352 53.7
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.9e-50 204.1 179 64.8
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 7.3e-46 189.5 132 78.8
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 2.2e-42 177.9 177 56.5
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 8.3e-42 176.0 130 72.3
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 9.2e-41 172.6 99 86.9
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.6e-40 171.8 159 61.6
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-39 169.1 93 90.3
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 1.0e-39 169.1 106 80.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 3.9e-39 167.2 101 80.2
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 7.3e-38 162.9 137 70.1
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.7e-37 160.2 430 57.4
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.5e-35 155.2 88 86.4
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 2.2e-34 151.4 101 72.3
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 4.1e-33 147.1 100 69.0
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 2.3e-31 141.4 82 82.9
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 4.3e-30 137.1 82 80.5
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 1.2e-29 135.6 71 94.4
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 2.4e-28 131.3 103 57.3
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 7.6e-27 126.3 83 73.5
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.2e-26 124.8 83 72.3
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 4.6e-24 117.1 177 46.9
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 7.8e-24 116.3 208 45.2
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 2.5e-22 111.3 66 81.8
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 2.5e-22 111.3 66 81.8
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 7.3e-22 109.8 65 83.1
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 2.6e-19 101.3 66 77.3
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 2.6e-19 101.3 162 47.5
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 2.6e-19 101.3 56 91.1
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.6e-19 101.3 469 43.7
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 7.6e-19 99.8 106 62.3
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 6.0e-16 90.1 55 83.6
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 5.6e-14 83.6 95 57.9
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 7.4e-14 83.2 94 58.5
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 5.3e-12 77.0 59 67.8
FvH4_2g11951 Fragaria vesca HOM05D003848 ORTHO05D035678 2.2e-10 71.6 46 71.7
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 4.9e-10 70.5 60 60.0
FAN24G2199 Fragaria x ananassa HOM05D003848 ORTHO05D035678 1.9e-09 68.6 46 69.6


User provided reference genes

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