Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 5.6e-160 567.8 331 100.0
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 1.3e-97 360.5 334 66.2
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 1.7e-92 343.6 334 63.8
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 4.2e-91 339.0 335 64.2
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 9.7e-88 327.8 350 62.0
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 6.3e-87 325.1 335 60.3
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 2.6e-85 319.7 349 59.3
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 4.7e-82 308.9 332 58.4
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 3.9e-81 305.8 332 58.7
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 4.1e-78 295.8 334 56.9
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 4.7e-74 282.3 218 72.0
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 5.5e-67 258.8 195 74.9
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 1.7e-60 237.3 337 50.4
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 5.4e-54 215.7 340 49.7
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 9.2e-54 214.9 347 47.6
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 7.7e-53 211.8 348 47.7
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 2.6e-48 196.8 356 44.9
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 1.7e-47 194.1 348 45.7
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 1.2e-45 188.0 331 45.9
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 2.0e-45 187.2 348 45.7
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 2.7e-45 186.8 348 45.4
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 3.5e-45 186.4 340 43.2
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 4.6e-45 186.0 325 44.9
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 3.0e-44 183.3 348 44.3
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 1.5e-43 181.0 354 43.5
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 3.3e-43 179.9 344 42.7
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 4.3e-43 179.5 351 43.3
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 9.5e-43 178.3 351 43.3
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 1.2e-42 177.9 351 43.0
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 3.6e-42 176.4 350 40.9
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 6.2e-42 175.6 351 42.2
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 8.0e-42 175.3 348 42.2
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 1.2e-40 171.4 352 41.8
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 1.5e-40 171.0 344 41.6
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 9.8e-40 168.3 352 40.9
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 1.3e-39 167.9 337 40.7
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 2.2e-39 167.2 334 43.7
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 4.9e-39 166.0 349 41.0
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 1.1e-38 164.9 335 43.3
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 2.4e-38 163.7 352 40.6
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 4.1e-38 162.9 355 40.0
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 1.1e-35 154.8 345 38.6
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.9e-35 154.1 363 39.7
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.9e-35 154.1 363 39.7
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 5.6e-35 152.5 335 40.0
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 2.8e-34 150.2 363 39.1
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 2.8e-34 150.2 359 39.6
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 4.7e-34 149.4 355 38.9
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.1e-33 148.3 363 39.4
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 6.8e-33 145.6 356 39.9
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 8.3e-31 138.7 352 38.9
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 1.1e-30 138.3 399 35.6
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 1.9e-30 137.5 368 38.0
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 3.2e-30 136.7 353 38.2
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 9.2e-30 135.2 193 52.3
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 1.6e-29 134.4 286 42.3
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 2.1e-29 134.0 341 37.2
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 2.7e-29 133.7 253 43.5
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 1.0e-28 131.7 334 38.6
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 3.9e-28 129.8 391 36.3
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 4.3e-27 126.3 270 40.7
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 7.3e-27 125.6 351 38.5
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 9.5e-27 125.2 354 34.5
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 1.2e-26 124.8 338 35.5
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 1.2e-26 124.8 331 38.7
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 8.1e-26 122.1 332 36.1
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 1.1e-25 121.7 353 38.8
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 1.8e-25 120.9 345 36.2
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 6.8e-25 119.0 332 35.5
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 2.0e-24 117.5 379 32.5
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 2.2e-23 114.0 269 39.0
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 4.9e-23 112.8 149 48.3
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 8.4e-23 112.1 352 35.2
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 3.2e-22 110.2 269 38.7
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 1.5e-19 101.3 242 37.6
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 1.2e-18 98.2 356 33.1
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 3.6e-18 96.7 265 36.6
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 4.7e-18 96.3 358 31.3
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 1.1e-17 95.1 336 34.2
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 1.4e-17 94.7 268 33.2
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 3.1e-17 93.6 341 32.0
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 4.0e-17 93.2 174 44.3
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 8.9e-17 92.0 224 37.1
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 2.0e-16 90.9 329 31.9
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 5.8e-16 89.4 338 34.6
TPR.G8308 Trifolium pratense HOM05D006273 ORTHO05D007607 5.8e-16 89.4 146 47.3
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 9.9e-16 88.6 343 33.8
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 8.4e-15 85.5 358 30.7
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 2.4e-14 84.0 178 38.8
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 4.2e-14 83.2 341 34.6
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 5.4e-14 82.8 263 35.0
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 1.2e-13 81.6 248 33.5
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 6.0e-13 79.3 329 31.6
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 7.8e-13 79.0 277 33.2
Aa31LG8G6430 Aethionema arabicum HOM05D006273 ORTHO05D007607 3.9e-12 76.6 244 37.3
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 3.9e-12 76.6 310 34.2
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 5.1e-12 76.3 335 31.0
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 5.1e-12 76.3 147 40.1
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 1.5e-11 74.7 329 31.3
CDE04G2504 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 1.5e-11 74.7 171 38.6
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 1.9e-11 74.3 201 36.3
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 3.3e-11 73.6 345 31.6
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 9.6e-11 72.0 246 35.8
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 9.6e-11 72.0 330 29.7
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 2.8e-10 70.5 250 34.8
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 1.8e-09 67.8 344 29.9
Medtr5g005040 Medicago truncatula HOM05D006273 ORTHO05D007607 3.1e-09 67.0 168 37.5
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 4.0e-09 66.6 329 29.8
Psat4g227520 Pisum sativum HOM05D006273 ORTHO05D007607 4.0e-09 66.6 242 33.1
Zm00001eb007690 Zea mays HOM05D006273 ORTHO05D007607 2.6e-08 63.9 274 29.2
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 2.2e-07 60.8 288 33.0
Dinv15805 Davidia involucrata HOM05D006273 ORTHO05D007607 4.9e-07 59.7 123 39.8
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 6.4e-07 59.3 272 30.9
Aqoxy6G02626 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 1.4e-06 58.2 197 36.0


User provided reference genes

Program Settings