Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 2299.6 1165 100.0
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 2033.5 1174 88.0
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 2031.5 1176 88.8
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 2016.5 1198 87.2
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 2013.4 1209 85.9
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 2010.7 1209 85.9
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 2006.1 1174 88.1
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1994.9 1198 86.6
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1985.3 1230 83.7
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1978.0 1172 87.0
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1966.4 1173 87.0
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1930.6 1174 84.3
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1879.8 1172 82.3
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1865.5 1173 81.5
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1865.1 1204 80.1
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1862.0 1173 81.3
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1851.6 1074 88.8
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1848.9 1173 81.2
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1847.0 1174 80.8
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1843.9 1174 80.7
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1843.6 1175 80.9
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1838.2 1175 80.6
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1835.1 1175 80.9
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1832.0 1179 80.2
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1830.1 1174 80.2
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1824.3 1184 79.3
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1816.6 1184 79.7
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1815.4 1174 79.4
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1808.9 1173 79.3
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1808.1 1173 79.3
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1806.2 1173 79.4
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1805.4 1174 78.7
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1805.0 1175 79.5
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1804.6 1175 78.4
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1803.9 1175 79.4
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1801.2 1175 79.5
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1800.4 1171 78.5
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1799.3 1218 77.4
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1797.3 1222 77.2
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1796.6 1222 77.1
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1795.8 1222 77.3
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1794.2 1174 79.0
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1785.8 1175 78.1
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1780.8 1174 77.9
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1775.4 1174 77.8
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1771.1 1175 78.0
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1761.1 1174 76.9
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1759.2 1227 74.4
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1755.0 1173 78.1
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1747.3 1231 74.1
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1746.1 1175 77.7
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1744.2 1175 77.6
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1743.8 1175 76.8
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1742.6 1174 76.4
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1738.8 1175 77.5
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1736.1 1176 77.0
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1728.8 1179 75.7
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1724.1 1175 75.7
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1722.6 1173 75.3
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1719.9 1180 75.3
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1717.6 1176 76.2
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1716.0 1213 74.5
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1709.9 1210 74.0
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1708.7 1172 75.4
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1707.6 1173 75.4
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1699.1 1175 74.8
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1699.1 1173 75.4
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1699.1 1174 75.0
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1698.3 1180 75.6
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1696.0 1203 74.4
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1696.0 1174 74.7
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1696.0 1174 74.9
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1692.2 1176 75.6
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1691.8 1161 75.8
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1688.7 1180 74.1
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1686.4 1174 75.2
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1682.2 1176 74.3
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1681.4 1174 75.0
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1680.6 1173 74.1
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1679.8 1175 74.8
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1678.7 1191 74.6
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1676.8 1174 74.8
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1676.0 1176 74.7
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1676.0 1176 74.2
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1675.2 1174 74.7
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1672.5 1178 73.9
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1671.4 1179 74.6
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1668.3 1179 74.2
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1664.4 1235 71.4
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1663.3 1101 77.8
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1662.5 1175 73.7
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1661.7 1180 73.5
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1660.2 1171 74.2
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1659.4 1180 74.0
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1657.1 1235 71.6
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1652.9 1176 72.8
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1640.9 1176 73.6
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1637.5 1219 71.1
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1635.2 1178 72.0
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1632.1 1176 73.5
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1629.0 1171 72.7
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1621.3 1177 72.9
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1620.9 1149 73.7
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1614.7 1176 72.7
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1614.7 1179 71.8
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1605.5 1174 72.2
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1602.0 1185 71.6
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1587.8 1207 70.5
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1587.0 1189 71.9
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1580.1 1192 70.6
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1575.1 1147 71.2
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1570.4 1179 71.3
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1530.4 1184 68.1
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1526.5 1180 68.0
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1525.4 1184 67.2
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1524.2 1184 67.3
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1521.5 1188 67.8
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1504.6 1113 72.5
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1481.1 948 79.5
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1468.0 948 79.7
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1459.5 964 78.2
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1457.6 1182 66.5
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1406.0 1035 72.9
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1392.9 1183 64.8
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1326.6 947 73.8
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1266.1 958 70.3
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1258.8 889 74.0
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1253.0 978 69.2
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1233.4 809 80.2
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1212.2 1179 58.6
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1209.9 971 68.5
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1181.8 807 77.0
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1174.1 816 75.4
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1122.1 821 72.0
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 2.0e-305 1052.7 1163 54.1
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 1.9e-300 1036.2 727 74.1
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 9.4e-287 990.7 1170 47.8
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 4.1e-282 975.3 1203 46.5
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 4.7e-270 935.3 540 86.9
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 6.3e-259 898.3 604 76.7
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.0e-252 876.7 715 66.4
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.5e-186 657.1 431 77.0
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 3.4e-172 610.1 360 85.3
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.1e-149 535.4 612 52.8
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 2.0e-135 488.0 307 78.8
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 7.8e-132 476.1 304 78.3
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 1.0e-131 475.7 304 78.3
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.9e-130 471.5 897 39.2
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.6e-116 425.2 805 36.4
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 6.0e-116 423.3 286 76.2
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 9.5e-114 416.0 1324 28.5
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 9.6e-90 336.3 225 72.4
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 6.4e-86 323.6 512 41.8
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 7.4e-82 310.1 282 63.8
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 6.2e-81 307.0 200 76.0
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 4.6e-76 290.8 206 70.9
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 6.7e-75 287.0 182 79.1
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.0e-70 273.1 260 60.8
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 6.0e-68 263.8 188 69.1
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 1.3e-65 256.1 186 72.6
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 9.0e-64 250.0 197 68.5
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 3.4e-63 248.1 181 70.2
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.6e-60 239.2 144 84.0
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 7.4e-50 203.8 132 78.8
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 4.5e-47 194.5 118 84.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.2e-44 186.4 125 73.6
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 2.1e-36 159.1 92 88.0
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.4e-27 129.8 86 79.1
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 5.2e-27 127.9 91 73.6
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 5.2e-27 127.9 91 73.6
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 9.1e-24 117.1 78 76.9
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.6e-20 106.3 59 86.4
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 5.7e-18 97.8 79 57.0
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 3.7e-17 95.1 83 62.7
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 9.2e-16 90.5 91 53.8
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.7e-14 86.3 46 76.1
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 8.6e-14 84.0 142 43.0
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 5.4e-08 64.7 65 56.9


User provided reference genes

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