Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 9.8e-105 383.6 217 100.0
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 1.5e-73 280.0 219 72.6
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 4.9e-72 275.0 218 71.1
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 1.9e-68 263.1 219 71.2
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 4.0e-66 255.4 215 68.8
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 8.9e-66 254.2 228 68.9
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 9.9e-65 250.8 221 70.6
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 8.4e-64 247.7 221 70.1
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 2.1e-59 233.0 221 62.9
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 6.4e-56 221.5 217 61.3
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 9.3e-55 217.6 222 55.4
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 1.7e-53 213.4 213 59.2
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 2.3e-53 213.0 223 56.1
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 3.0e-53 212.6 212 54.7
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 3.3e-52 209.1 222 55.9
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 4.3e-52 208.8 217 54.4
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 1.4e-50 203.8 214 53.3
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 3.1e-50 202.6 212 51.9
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 6.9e-50 201.4 224 51.8
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 6.9e-50 201.4 224 51.3
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 6.9e-50 201.4 217 53.0
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 6.9e-50 201.4 216 62.5
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 1.2e-49 200.7 224 51.8
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 4.5e-49 198.7 214 51.9
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 4.5e-49 198.7 214 51.9
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 4.5e-49 198.7 225 53.8
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 5.8e-49 198.4 220 52.3
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 1.7e-48 196.8 223 48.9
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 1.7e-48 196.8 214 51.9
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 2.9e-48 196.1 215 53.0
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 3.8e-48 195.7 220 50.9
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 6.4e-48 194.9 221 52.5
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 1.4e-47 193.7 223 50.7
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 1.4e-47 193.7 219 52.5
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 1.4e-47 193.7 225 50.7
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 2.4e-47 193.0 225 51.1
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 3.2e-47 192.6 220 51.4
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 5.4e-47 191.8 221 50.2
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 7.1e-47 191.4 221 53.4
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 3.5e-46 189.1 217 50.7
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 7.9e-46 188.0 220 52.7
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 1.8e-45 186.8 222 49.5
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 1.9e-44 183.3 215 53.0
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 2.5e-44 183.0 217 50.2
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 2.5e-44 183.0 229 49.3
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 1.3e-43 180.6 214 46.7
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 1.6e-43 180.3 222 49.1
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 3.6e-43 179.1 215 51.2
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 4.8e-43 178.7 218 49.5
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 6.2e-43 178.3 220 48.6
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 8.1e-43 177.9 213 54.0
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 8.1e-43 177.9 219 49.3
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.1e-42 177.6 219 49.3
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 1.8e-42 176.8 218 48.2
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 1.8e-42 176.8 223 50.2
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 5.3e-42 175.3 222 44.6
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 5.3e-42 175.3 219 47.9
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 6.9e-42 174.9 224 47.8
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 9.0e-42 174.5 220 46.8
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 2.0e-41 173.3 226 49.1
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 2.0e-41 173.3 222 52.3
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 4.5e-41 172.2 218 46.8
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 7.6e-41 171.4 225 48.0
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 9.9e-41 171.0 172 56.4
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 1.7e-40 170.2 214 45.3
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 1.7e-40 170.2 226 49.1
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 2.2e-40 169.9 217 47.5
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 2.2e-40 169.9 239 43.9
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 3.8e-40 169.1 217 48.8
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 4.9e-40 168.7 223 48.4
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 4.9e-40 168.7 220 48.2
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 8.4e-40 167.9 217 46.1
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 2.4e-39 166.4 217 45.6
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 9.3e-39 164.5 221 45.2
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 1.2e-38 164.1 266 40.2
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 1.2e-38 164.1 170 52.9
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 1.6e-38 163.7 220 46.4
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 1.0e-37 161.0 225 43.6
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 1.8e-37 160.2 216 43.5
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 8.7e-37 157.9 225 44.4
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 1.5e-36 157.1 228 44.3
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 4.3e-36 155.6 221 44.8
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 3.7e-35 152.5 220 46.8
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 3.7e-35 152.5 221 43.4
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 4.8e-35 152.1 184 51.1
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 8.1e-35 151.4 227 47.1
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 2.4e-34 149.8 239 41.8
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 2.0e-33 146.7 225 43.6
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 2.6e-33 146.4 220 46.8
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 4.9e-32 142.1 215 49.8
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 3.2e-31 139.4 225 43.1
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 9.3e-31 137.9 164 51.2
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 1.2e-30 137.5 226 42.0
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 1.6e-30 137.1 124 61.3
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 6.7e-29 131.7 225 43.6
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 1.6e-27 127.1 126 54.0
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 1.6e-27 127.1 228 38.2
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 6.3e-27 125.2 228 37.3
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 1.4e-26 124.0 219 41.6
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 1.4e-26 124.0 233 39.5
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 2.4e-26 123.2 171 45.6
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 1.5e-25 120.6 223 32.3
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 2.9e-24 116.3 217 36.9
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 4.6e-22 109.0 125 48.0
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 1.3e-19 100.9 324 29.6
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 1.1e-18 97.8 120 45.8
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 3.1e-18 96.3 118 44.9
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 8.8e-13 78.2 242 30.6
BraA07t30840Z Brassica rapa HOM05D006456 ORTHO05D007588 2.6e-12 76.6 91 48.4
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 3.3e-12 76.3 234 31.6
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 4.4e-12 75.9 53 66.0
CDE06G0604 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 9.7e-12 74.7 112 43.8
BolC6t38885H Brassica oleracea HOM05D006456 ORTHO05D007588 1.3e-11 74.3 95 47.4
SEGI_26799 Sequoiadendron giganteum HOM05D006456 ORTHO05D007588 3.1e-10 69.7 104 41.3
Actinidia31998 Actinidia chinensis HOM05D006456 ORTHO05D007588 8.5e-08 61.6 64 54.7


User provided reference genes

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