Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0004990 Lotus japonicus HOM05D003556 ORTHO05D003404 6.6e-94 347.4 184 100.0
Ca_20910_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 4.2e-56 221.9 187 65.8
Lalb_Chr02g0146451 Lupinus albus HOM05D003556 ORTHO05D003404 2.7e-55 219.2 178 64.6
Medtr4g071020 Medicago truncatula HOM05D003556 ORTHO05D003404 4.6e-55 218.4 169 68.6
TPR.G30505 Trifolium pratense HOM05D002265 ORTHO05D002400 3.0e-54 215.7 183 63.4
Psat7g183080 Pisum sativum HOM05D003556 ORTHO05D003404 1.1e-53 213.8 172 65.1
Glyma.03G215700 Glycine max HOM05D003556 ORTHO05D003404 2.8e-52 209.1 163 66.3
Glyma.19G212200 Glycine max HOM05D003556 ORTHO05D003404 2.0e-50 203.0 167 64.1
VMungo1309G0611 Vigna mungo HOM05D003556 ORTHO05D003404 2.6e-50 202.6 170 61.8
Lalb_Chr06g0166521 Lupinus albus HOM05D003556 ORTHO05D003404 1.7e-49 199.9 178 61.8
Phvul.007G246800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 2.9e-49 199.1 169 61.5
VMungo0720G1834 Vigna mungo HOM05D003556 ORTHO05D003404 2.9e-49 199.1 169 59.8
Glyma.10G017300 Glycine max HOM05D003556 ORTHO05D003404 1.1e-48 197.2 162 61.7
Glyma.02G016700 Glycine max HOM05D003556 ORTHO05D003404 1.4e-48 196.8 171 60.8
Lalb_Chr04g0259851 Lupinus albus HOM05D003556 ORTHO05D003404 3.2e-48 195.7 180 60.6
VMungo1309G2342 Vigna mungo HOM05D003556 ORTHO05D003404 9.3e-48 194.1 167 59.3
Ca_09185_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 1.6e-47 193.4 163 64.4
Phvul.001G209000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 2.1e-47 193.0 194 57.2
VMungo1383G2652 Vigna mungo HOM05D003556 ORTHO05D003404 1.3e-46 190.3 176 57.4
TPR.G9645 Trifolium pratense HOM05D003556 ORTHO05D003404 3.0e-46 189.1 169 59.8
VMungo1383G0005 Vigna mungo HOM05D003556 ORTHO05D003404 3.9e-46 188.7 196 54.6
Phvul.001G208600 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.1e-45 187.2 182 56.0
Phvul.001G208900 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.1e-45 187.2 182 57.1
Psat0s1683g0040 Pisum sativum HOM05D003556 ORTHO05D003404 1.9e-45 186.4 169 60.9
Lj1g0023613 Lotus japonicus HOM05D003556 ORTHO05D003404 2.5e-45 186.0 173 60.1
Phvul.001G208700 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.3e-44 183.7 182 56.0
Phvul.009G236000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.3e-44 183.7 170 54.7
Lalb_Chr15g0078461 Lupinus albus HOM05D003556 ORTHO05D003404 2.8e-44 182.6 184 56.0
VMungo0331G0621 Vigna mungo HOM05D003556 ORTHO05D003404 2.8e-44 182.6 177 56.5
Phvul.001G208800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 2.0e-42 176.4 180 54.4
Medtr7g108865 Medicago truncatula HOM05D003556 ORTHO05D003404 5.5e-40 168.3 169 56.8
arahy.Tifrunner.gnm1.ann1.HDU51Y Arachis hypogaea HOM05D003556 ORTHO05D003404 1.5e-37 160.2 180 50.6
arahy.Tifrunner.gnm1.ann1.GMFP2F Arachis hypogaea HOM05D003556 ORTHO05D003404 1.3e-36 157.1 180 49.4
Haze_04964 Corylus avellana HOM05D003556 ORTHO05D003404 3.1e-27 125.9 171 40.9
Cfa005888 Carpinus fangiana HOM05D003556 ORTHO05D003404 7.7e-26 121.3 172 40.7
CANSAT25G1336 Cannabis sativa HOM05D003556 ORTHO05D003404 1.7e-25 120.2 151 42.4
SHI15103 Sapria himalayana HOM05D003556 ORTHO05D003404 8.5e-25 117.9 172 41.9
CsaV3_4G000950 Cucumis sativus L. HOM05D003556 ORTHO05D003404 1.8e-22 110.2 172 37.8
MELO3C017944.2 Cucumis melo HOM05D003556 ORTHO05D003404 3.9e-22 109.0 160 40.0
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 8.8e-22 107.8 149 39.6
MD11G1307600 Malus domestica HOM05D003556 ORTHO05D003404 1.1e-21 107.5 161 39.8
CSS0043898 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.5e-21 107.1 148 39.2
ClCG10G011070 Citrullus lanatus HOM05D003556 ORTHO05D003404 1.5e-21 107.1 172 39.0
Rhsim13G0008900 Rhododendron simsii HOM05D003556 ORTHO05D003404 1.5e-21 107.1 150 40.0
MD03G1290800 Malus domestica HOM05D003556 ORTHO05D003404 2.2e-20 103.2 162 39.5
FvH4_2g25950 Fragaria vesca HOM05D003556 ORTHO05D003404 2.8e-20 102.8 147 40.1
FAN20G1394 Fragaria x ananassa HOM05D003556 ORTHO05D003404 2.8e-20 102.8 147 40.1
FAN24G2751 Fragaria x ananassa HOM05D003556 ORTHO05D003404 2.8e-20 102.8 147 40.1
Potri.004G016500 Populus trichocarpa HOM05D003556 ORTHO05D003404 3.7e-20 102.4 179 36.9
FAN15G3222 Fragaria x ananassa HOM05D003556 ORTHO05D003404 4.8e-20 102.1 147 39.5
QL12p028082 Quercus lobata HOM05D003556 ORTHO05D003404 1.1e-19 100.9 168 39.3
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 3.1e-19 99.4 172 36.6
CSS0044540 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.2e-18 97.4 175 37.7
FAN27G3015 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.2e-18 97.4 147 39.5
RcHm_v2.0_Chr6g0294271 Rosa chinensis HOM05D003556 ORTHO05D003404 7.7e-18 94.7 150 36.7
PGR119G1148 Punica granatum HOM05D003556 ORTHO05D003404 1.3e-17 94.0 146 38.4
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 1.7e-17 93.6 162 36.4
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 3.8e-17 92.4 164 36.0
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 5.0e-17 92.0 178 35.4
Dinv19674 Davidia involucrata HOM05D003556 ORTHO05D003404 6.5e-17 91.7 151 37.7
Sabra01G0098200 Salix brachista HOM05D003556 ORTHO05D003404 6.5e-17 91.7 172 33.7
Thhalv10029000m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 1.1e-16 90.9 151 34.4
Potri.001G127500 Populus trichocarpa HOM05D003556 ORTHO05D003404 1.4e-16 90.5 147 38.1
Sp6g02140 Schrenkiella parvula HOM05D003556 ORTHO05D003404 1.9e-16 90.1 151 34.4
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 2.5e-16 89.7 147 36.1
Atru.chr5.1112 Acer truncatum HOM05D003556 ORTHO05D003404 3.2e-16 89.4 175 37.7
Sed0000124 Sechium edule HOM05D003556 ORTHO05D003404 3.2e-16 89.4 171 35.7
THA.LOC104825958 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 3.2e-16 89.4 148 33.1
Carub.0006s3492 Capsella rubella HOM05D003556 ORTHO05D003404 4.2e-16 89.0 151 33.1
Lj2A1197T77 Lonicera japonica HOM05D003556 ORTHO05D003404 4.2e-16 89.0 188 35.1
Nn3g21538 Nelumbo nucifera HOM05D003556 ORTHO05D003404 5.5e-16 88.6 181 34.8
BcaB01g02439 Brassica carinata HOM05D003556 ORTHO05D003404 7.2e-16 88.2 150 34.7
BcaC01g06767 Brassica carinata HOM05D003556 ORTHO05D003404 7.2e-16 88.2 150 34.7
C03p37950 Brassica napus HOM05D003556 ORTHO05D003404 7.2e-16 88.2 150 34.7
BolC3t16082H Brassica oleracea HOM05D003556 ORTHO05D003404 7.2e-16 88.2 150 34.7
THA.LOC104801288 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 7.2e-16 88.2 151 32.5
A03p31140 Brassica napus HOM05D003556 ORTHO05D003404 9.4e-16 87.8 150 34.7
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 9.4e-16 87.8 147 36.1
BraA03t12291Z Brassica rapa HOM05D003556 ORTHO05D003404 1.2e-15 87.4 150 34.7
Aa31LG10G420 Aethionema arabicum HOM05D003556 ORTHO05D003404 1.6e-15 87.0 168 31.5
Thecc.01G303600 Theobroma cacao HOM05D003556 ORTHO05D003404 2.1e-15 86.7 173 35.3
Aa31LG5G1910 Aethionema arabicum HOM05D003556 ORTHO05D003404 2.7e-15 86.3 150 32.7
AL6G50890 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 3.6e-15 85.9 151 32.5
CARHR250460 Cardamine hirsuta HOM05D003556 ORTHO05D003404 3.6e-15 85.9 151 33.1
TWI14G0192 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 3.6e-15 85.9 178 30.9
AL1G63880 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 4.7e-15 85.5 149 32.9
BcaB01g02062 Brassica carinata HOM05D003556 ORTHO05D003404 4.7e-15 85.5 150 34.0
BcaC03g16110 Brassica carinata HOM05D003556 ORTHO05D003404 6.1e-15 85.1 150 33.3
A02p24580 Brassica napus HOM05D003556 ORTHO05D003404 6.1e-15 85.1 150 33.3
A06p00030 Brassica napus HOM05D003556 ORTHO05D003404 6.1e-15 85.1 174 32.2
C02p38810 Brassica napus HOM05D003556 ORTHO05D003404 6.1e-15 85.1 150 33.3
BolC2t09897H Brassica oleracea HOM05D003556 ORTHO05D003404 6.1e-15 85.1 150 33.3
BraA02t07448Z Brassica rapa HOM05D003556 ORTHO05D003404 6.1e-15 85.1 150 33.3
BraA06t23219Z Brassica rapa HOM05D003556 ORTHO05D003404 6.1e-15 85.1 174 32.2
MBI19_g44106_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 6.1e-15 85.1 151 37.1
BcaC04g24050 Brassica carinata HOM05D003556 ORTHO05D003404 7.9e-15 84.7 150 34.0
A09p01710 Brassica napus HOM05D003556 ORTHO05D003404 7.9e-15 84.7 150 34.0
C09p01780 Brassica napus HOM05D003556 ORTHO05D003404 7.9e-15 84.7 150 34.0
BolC9t53113H Brassica oleracea HOM05D003556 ORTHO05D003404 7.9e-15 84.7 150 34.0
BraA09t35826Z Brassica rapa HOM05D003556 ORTHO05D003404 7.9e-15 84.7 150 34.0
Ciclev10023798m.g Citrus clementina HOM05D003556 ORTHO05D003404 7.9e-15 84.7 148 37.8
Cpa.g.sc151.17 Carica papaya HOM05D003556 ORTHO05D003404 1.0e-14 84.3 177 33.9
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 1.0e-14 84.3 173 35.8
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 1.0e-14 84.3 175 35.4
CANSAT25G0193 Cannabis sativa HOM05D003556 ORTHO05D003404 1.4e-14 84.0 169 34.3
BcaB05g23608 Brassica carinata HOM05D003556 ORTHO05D003404 1.8e-14 83.6 150 34.0
TWI23G0284 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 3.0e-14 82.8 179 33.0
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 5.1e-14 82.0 159 36.5
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 5.1e-14 82.0 170 33.5
CARHR045450 Cardamine hirsuta HOM05D003556 ORTHO05D003404 6.7e-14 81.6 149 32.2
Sed0018956 Sechium edule HOM05D003556 ORTHO05D003404 6.7e-14 81.6 169 32.5
THA.LOC104822713 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 6.7e-14 81.6 167 31.1
BcaC08g44217 Brassica carinata HOM05D003556 ORTHO05D003404 8.8e-14 81.3 149 31.5
C06p16220 Brassica napus HOM05D003556 ORTHO05D003404 8.8e-14 81.3 149 31.5
BolC6t36819H Brassica oleracea HOM05D003556 ORTHO05D003404 8.8e-14 81.3 149 31.5
Duzib133G0465 Durio zibethinus HOM05D003556 ORTHO05D003404 8.8e-14 81.3 184 31.5
Sp1g41350 Schrenkiella parvula HOM05D003556 ORTHO05D003404 8.8e-14 81.3 149 32.2
Cfa005889 Carpinus fangiana HOM05D003556 ORTHO05D003404 2.6e-13 79.7 148 33.1
ClCG03G017200 Citrullus lanatus HOM05D003556 ORTHO05D003404 3.3e-13 79.3 151 32.5
Haze_04963 Corylus avellana HOM05D003556 ORTHO05D003404 3.3e-13 79.3 172 32.6
MELO3C015291.2 Cucumis melo HOM05D003556 ORTHO05D003404 3.3e-13 79.3 176 30.7
Manes.09G173500 Manihot esculenta HOM05D003556 ORTHO05D003404 4.4e-13 79.0 148 36.5
Sed0028173 Sechium edule HOM05D003556 ORTHO05D003404 4.4e-13 79.0 176 32.4
Dinv33067 Davidia involucrata HOM05D003556 ORTHO05D003404 5.7e-13 78.6 152 34.9
Thhalv10012280m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 5.7e-13 78.6 172 29.1
A08p00310 Brassica napus HOM05D003556 ORTHO05D003404 7.4e-13 78.2 149 32.2
C03p93200 Brassica napus HOM05D003556 ORTHO05D003404 7.4e-13 78.2 149 31.5
BraA05t20629Z Brassica rapa HOM05D003556 ORTHO05D003404 7.4e-13 78.2 150 30.7
BraA08t32089Z Brassica rapa HOM05D003556 ORTHO05D003404 7.4e-13 78.2 149 32.2
TWI59G1361 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 7.4e-13 78.2 179 30.2
A05p17320 Brassica napus HOM05D003556 ORTHO05D003404 9.7e-13 77.8 150 30.7
Dinv40359 Davidia involucrata HOM05D003556 ORTHO05D003404 1.3e-12 77.4 164 32.9
BolC3t21618H Brassica oleracea HOM05D003556 ORTHO05D003404 1.7e-12 77.0 149 31.5
CsaV3_1G038650 Cucumis sativus L. HOM05D003556 ORTHO05D003404 2.2e-12 76.6 176 29.0
EL10Ac7g18176 Beta vulgaris HOM05D003556 ORTHO05D003404 2.8e-12 76.3 192 29.7
Carub.0001s4433 Capsella rubella HOM05D003556 ORTHO05D003404 3.7e-12 75.9 149 30.9
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 4.8e-12 75.5 148 35.1
BcaB02g10800 Brassica carinata HOM05D003556 ORTHO05D003404 4.8e-12 75.5 149 30.9
BcaB07g33190 Brassica carinata HOM05D003556 ORTHO05D003404 4.8e-12 75.5 157 31.2
AT1G55770 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 6.3e-12 75.1 168 29.2
AT4G02250 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 1.4e-11 73.9 137 31.4
Duzib138G0838 Durio zibethinus HOM05D003556 ORTHO05D003404 1.8e-11 73.6 183 30.1
Sc25g0000800 Simmondsia chinensis HOM05D003556 ORTHO05D003404 2.4e-11 73.2 175 30.9
Gohir.D08G051900 Gossypium hirsutum HOM05D003556 ORTHO05D003404 4.1e-11 72.4 143 32.2
Actinidia19773 Actinidia chinensis HOM05D003556 ORTHO05D003404 5.3e-11 72.0 152 34.2
Gohir.A08G042100 Gossypium hirsutum HOM05D003556 ORTHO05D003404 5.3e-11 72.0 143 31.5
Gorai.004G052000 Gossypium raimondii HOM05D003556 ORTHO05D003404 5.3e-11 72.0 141 32.6
CiPaw.07G023500 Carya illinoinensis HOM05D003556 ORTHO05D003404 1.2e-10 70.9 179 34.1
MBI18_g25093_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 3.5e-10 69.3 173 30.1
ATR1149G037 Amborella trichopoda HOM05D003556 ORTHO05D003404 4.5e-10 68.9 173 32.9
Cfa006651 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.0e-09 67.8 155 34.8
Migut.D00139 Erythranthe guttata HOM05D021624 ORTHO05D015999 1.0e-09 67.8 130 31.5
Rhsim05G0137100 Rhododendron simsii HOM05D003556 ORTHO05D003404 1.7e-09 67.0 148 32.4
COL.COLO4_17128 Corchorus olitorius HOM05D001445 ORTHO05D001261 2.9e-09 66.2 158 31.0
TWI56G0141 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 3.8e-09 65.9 171 30.4
Cfa006653 Carpinus fangiana HOM05D003556 ORTHO05D003404 6.5e-09 65.1 183 32.2
HPP92_002230 Vanilla planifolia HOM05D003556 ORTHO05D003404 1.1e-08 64.3 177 29.4
Cfa006646 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.9e-08 63.5 183 31.1
Ciclev10032808m.g Citrus clementina HOM05D001445 ORTHO05D001261 1.9e-08 63.5 172 26.7
QL12p007390 Quercus lobata HOM05D001445 ORTHO05D001261 1.9e-08 63.5 156 31.4
CANSAT54G0162 Cannabis sativa HOM05D003556 ORTHO05D003404 3.2e-08 62.8 151 30.5
Nn1g00650 Nelumbo nucifera HOM05D001445 ORTHO05D001261 4.2e-08 62.4 150 29.3
Prupe.5G048600 Prunus persica HOM05D001445 ORTHO05D001261 2.7e-07 59.7 184 27.2
FvH4_5g20950 Fragaria vesca HOM05D001445 ORTHO05D001261 3.6e-07 59.3 140 30.0
PSO782G0985 Papaver somniferum HOM05D001445 ORTHO05D001261 3.6e-07 59.3 178 28.7
MSTRG.21643 Avicennia marina HOM05D021624 ORTHO05D015999 4.7e-07 58.9 122 30.3
CDE04G0621 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 4.7e-07 58.9 172 26.7
Manes.08G115800 Manihot esculenta HOM05D001445 ORTHO05D003404 6.1e-07 58.5 148 30.4
MSTRG.18138 Avicennia marina HOM05D021624 ORTHO05D015999 8.0e-07 58.2 132 30.3
CSS0025537 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 8.0e-07 58.2 152 32.9
CSS0050483 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 8.0e-07 58.2 152 32.9
CDE07G1929 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 8.0e-07 58.2 150 32.0
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 8.0e-07 58.2 151 28.5
HPP92_021578 Vanilla planifolia HOM05D001445 ORTHO05D001261 8.0e-07 58.2 136 32.4
CDE02G0716 Ceratophyllum demersum HOM05D000085 ORTHO05D000158 1.8e-06 57.0 150 31.3
PGR004G1348 Punica granatum HOM05D008403 ORTHO05D010317 2.3e-06 56.6 148 27.7
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 3.0e-06 56.2 154 29.9
HPP92_014651 Vanilla planifolia HOM05D001445 ORTHO05D001261 3.0e-06 56.2 174 25.9
Manes.08G115700 Manihot esculenta HOM05D001445 ORTHO05D003404 4.0e-06 55.8 148 28.4
TWI34G1970 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 6.7e-06 55.1 174 29.9
Cpa.g.sc29.3 Carica papaya HOM05D001445 ORTHO05D001261 8.8e-06 54.7 148 27.7
Sc07g0008930 Simmondsia chinensis HOM05D001445 ORTHO05D001261 8.8e-06 54.7 129 31.8
TAR375G0055 Trochodendron aralioides HOM05D001445 ORTHO05D001261 8.8e-06 54.7 167 29.9


User provided reference genes

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