Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0004917 Lotus japonicus HOM05D007224 ORTHO05D009169 7.2e-142 507.3 268 100.0
Ca_06981_v3 Cicer arietinum L. HOM05D007224 ORTHO05D009169 1.8e-108 396.4 264 78.0
TPR.G13169 Trifolium pratense HOM05D007224 ORTHO05D009169 4.6e-104 381.7 263 75.3
Glyma.17G232300 Glycine max HOM05D007224 ORTHO05D009169 1.7e-103 379.8 266 80.1
VMungo0647G2475 Vigna mungo HOM05D007224 ORTHO05D009169 4.0e-100 368.6 259 76.4
Lalb_Chr22g0355811 Lupinus albus HOM05D007224 ORTHO05D009169 7.6e-99 364.4 272 73.2
Phvul.001G031100 Phaseolus vulgaris HOM05D007224 ORTHO05D009169 8.4e-98 360.9 260 73.8
Psat6g017040 Pisum sativum HOM05D007224 ORTHO05D009169 7.1e-97 357.8 263 71.5
Medtr1g017450 Medicago truncatula HOM05D007224 ORTHO05D009169 2.1e-96 356.3 257 73.2
RcHm_v2.0_Chr6g0310081 Rosa chinensis HOM05D007224 ORTHO05D009169 7.1e-89 331.3 272 68.4
CsaV3_2G025920 Cucumis sativus L. HOM05D007224 ORTHO05D009169 1.3e-87 327.0 269 62.8
MELO3C010785.2 Cucumis melo HOM05D007224 ORTHO05D009169 8.7e-87 324.3 269 63.2
Duzib116G0584 Durio zibethinus HOM05D007224 ORTHO05D009169 1.9e-86 323.2 263 64.3
CANSAT56G0920 Cannabis sativa HOM05D007224 ORTHO05D009169 2.4e-84 316.2 268 62.7
GSVIVG01009296001 Vitis vinifera HOM05D007224 ORTHO05D009169 2.4e-84 316.2 271 63.5
TWI12G0175 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 1.5e-83 313.5 269 63.2
Gohir.D06G023300 Gossypium hirsutum HOM05D007224 ORTHO05D009169 2.6e-83 312.8 267 64.4
ClCG08G016710 Citrullus lanatus HOM05D007224 ORTHO05D009169 5.8e-83 311.6 259 62.9
Gorai.010G028000 Gossypium raimondii HOM05D007224 ORTHO05D009169 5.8e-83 311.6 267 64.0
TWI56G1112 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 1.7e-82 310.1 269 62.5
FAN20G0095 Fragaria x ananassa HOM05D007224 ORTHO05D009169 1.9e-81 306.6 269 61.0
MD08G1077300 Malus domestica HOM05D007224 ORTHO05D009169 7.1e-81 304.7 273 64.1
MD15G1064800 Malus domestica HOM05D007224 ORTHO05D009169 7.1e-81 304.7 275 63.3
Gohir.A06G026200 Gossypium hirsutum HOM05D007224 ORTHO05D009169 1.2e-80 303.9 266 61.7
Atru.chr13.874 Acer truncatum HOM05D007224 ORTHO05D009169 6.0e-80 301.6 271 60.1
FvH4_2g32650 Fragaria vesca HOM05D007224 ORTHO05D009169 1.0e-79 300.8 268 63.8
CiPaw.07G171700 Carya illinoinensis HOM05D007224 ORTHO05D009169 4.3e-78 295.4 273 63.0
FAN27G0962 Fragaria x ananassa HOM05D007224 ORTHO05D009169 4.3e-78 295.4 265 60.8
arahy.Tifrunner.gnm1.ann1.TQ0B6U Arachis hypogaea HOM05D007224 ORTHO05D009169 5.6e-78 295.0 253 64.8
THA.LOC104799830 Tarenaya hassleriana HOM05D007224 ORTHO05D009169 4.8e-77 292.0 261 60.9
TAR628G0831 Trochodendron aralioides HOM05D007224 ORTHO05D009169 2.4e-76 289.7 260 58.5
Ciclev10002194m.g Citrus clementina HOM05D007224 ORTHO05D009169 3.1e-76 289.3 224 67.0
Prupe.1G418700 Prunus persica HOM05D007224 ORTHO05D009169 2.0e-75 286.6 270 59.3
AT1G44920 Arabidopsis thaliana HOM05D007224 ORTHO05D009169 9.9e-75 284.3 256 59.8
A10p07160 Brassica napus HOM05D007224 ORTHO05D009169 9.9e-75 284.3 255 57.6
FAN24G0100 Fragaria x ananassa HOM05D007224 ORTHO05D009169 2.2e-74 283.1 267 60.7
Hund05274 Selenicereus undatus HOM05D007224 ORTHO05D009169 2.9e-74 282.7 279 57.3
Thecc.08G084200 Theobroma cacao HOM05D007224 ORTHO05D009169 2.9e-74 282.7 267 59.6
Sc26g0004240 Simmondsia chinensis HOM05D007224 ORTHO05D009169 6.4e-74 281.6 242 61.6
BcaC08g42889 Brassica carinata HOM05D007224 ORTHO05D009169 1.4e-73 280.4 255 56.9
Cfa013733 Carpinus fangiana HOM05D007224 ORTHO05D009169 2.5e-73 279.6 271 60.5
PSO541G3785 Papaver somniferum HOM05D007224 ORTHO05D009169 2.5e-73 279.6 270 55.9
Sp1g33790 Schrenkiella parvula HOM05D007224 ORTHO05D009169 2.5e-73 279.6 255 57.6
FAN15G3290 Fragaria x ananassa HOM05D007224 ORTHO05D009169 7.1e-73 278.1 220 65.0
Thhalv10011734m.g Eutrema salsugineum HOM05D007224 ORTHO05D009169 1.6e-72 276.9 255 56.5
Haze_22381 Corylus avellana HOM05D007224 ORTHO05D009169 2.1e-72 276.6 261 61.3
AL1G52590 Arabidopsis lyrata HOM05D007224 ORTHO05D009169 3.5e-72 275.8 259 58.3
CDE04G2175 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 3.5e-72 275.8 268 55.6
Potri.002G114900 Populus trichocarpa HOM05D007224 ORTHO05D009169 3.5e-72 275.8 269 59.5
Nn5g30669 Nelumbo nucifera HOM05D007224 ORTHO05D009169 3.0e-71 272.7 268 54.9
CAN.G1239.16 Capsicum annuum HOM05D007224 ORTHO05D009169 6.7e-71 271.6 283 54.1
BcaB07g33899 Brassica carinata HOM05D007224 ORTHO05D009169 1.1e-70 270.8 243 58.0
Manes.18G049850 Manihot esculenta HOM05D007224 ORTHO05D009169 1.1e-70 270.8 273 58.2
Ah.11g039150 Amaranthus hybridus HOM05D007224 ORTHO05D009169 1.5e-70 270.4 217 70.0
Carub.0001s3542 Capsella rubella HOM05D007224 ORTHO05D009169 1.9e-70 270.0 253 57.7
PGR083G2708 Punica granatum HOM05D007224 ORTHO05D009169 2.5e-70 269.6 179 73.7
BolC6t35243H Brassica oleracea HOM05D007224 ORTHO05D009169 2.1e-69 266.5 273 52.7
PSO675G4824 Papaver somniferum HOM05D007224 ORTHO05D009169 3.7e-69 265.8 270 56.3
Solyc04g077500.4 Solanum lycopersicum HOM05D007224 ORTHO05D009169 3.7e-69 265.8 295 52.2
Sopen04g031100 Solanum pennellii HOM05D007224 ORTHO05D009169 3.7e-69 265.8 295 51.9
Actinidia10224 Actinidia chinensis HOM05D007224 ORTHO05D009169 4.8e-69 265.4 278 56.1
C06p01100 Brassica napus HOM05D007224 ORTHO05D009169 3.1e-68 262.7 246 55.3
Lj4A752T19 Lonicera japonica HOM05D007224 ORTHO05D009169 3.1e-68 262.7 279 54.5
CARHR036150 Cardamine hirsuta HOM05D007224 ORTHO05D009169 4.0e-68 262.3 189 67.2
COL.COLO4_28456 Corchorus olitorius HOM05D007224 ORTHO05D009169 1.2e-67 260.8 241 58.1
BraA10t42965Z Brassica rapa HOM05D007224 ORTHO05D009169 2.6e-67 259.6 271 52.0
CSS0049759 Camellia sinensis var. sinensis HOM05D007224 ORTHO05D009169 2.6e-67 259.6 177 73.4
Dinv44928 Davidia involucrata HOM05D007224 ORTHO05D009169 6.5e-66 255.0 271 58.7
Nitab4.5_0001494g0030 Nicotiana tabacum HOM05D007224 ORTHO05D009169 6.5e-66 255.0 283 53.7
PGSC0003DMG400004920 Solanum tuberosum HOM05D007224 ORTHO05D009169 6.5e-66 255.0 287 54.7
arahy.Tifrunner.gnm1.ann1.XZQ8AB Arachis hypogaea HOM05D007224 ORTHO05D009169 8.4e-66 254.6 234 65.0
MSTRG.22207 Avicennia marina HOM05D007224 ORTHO05D009169 1.4e-65 253.8 237 58.2
vmacro21415 Vaccinium macrocarpon HOM05D007224 ORTHO05D009169 1.4e-65 253.8 276 55.1
DCAR_009866 Daucus carota HOM05D007224 ORTHO05D009169 1.9e-65 253.4 226 60.2
HanXRQChr04g0110471 Helianthus annuus HOM05D007224 ORTHO05D009169 3.2e-65 252.7 183 66.7
EL10Ac1g02348 Beta vulgaris HOM05D007224 ORTHO05D009169 9.3e-65 251.1 221 61.5
Rhsim06G0064800 Rhododendron simsii HOM05D007224 ORTHO05D009169 2.1e-64 250.0 171 73.1
Aa31LG7G10090 Aethionema arabicum HOM05D007224 ORTHO05D009169 1.0e-63 247.7 277 49.8
SalBow7G4028 Salvia bowleyana HOM05D007224 ORTHO05D009169 8.7e-63 244.6 269 52.0
unitig_52.g17426 Utricularia gibba HOM05D007224 ORTHO05D009169 9.7e-62 241.1 180 66.1
Peaxi162Scf01161g00120 Petunia axillaris HOM05D007224 ORTHO05D009169 2.8e-61 239.6 283 49.1
Sabra02G0090900 Salix brachista HOM05D007224 ORTHO05D009169 3.7e-61 239.2 316 47.8
Migut.C00453 Erythranthe guttata HOM05D007224 ORTHO05D009169 4.8e-61 238.8 258 51.9
Lsat_1_v5_gn_0_47281 Lactuca sativa HOM05D007224 ORTHO05D009169 6.3e-61 238.4 260 51.2
ATR0739G089 Amborella trichopoda HOM05D007224 ORTHO05D009169 1.5e-59 233.8 192 63.5
MBI16_g06074_MAGBIO Magnolia biondii HOM05D007224 ORTHO05D009169 1.5e-59 233.8 258 52.7
Cc10_g07670 Coffea canephora HOM05D007224 ORTHO05D009169 3.4e-59 232.6 253 53.4
Aqoxy6G02448 Aquilegia oxysepala HOM05D007224 ORTHO05D009169 5.9e-59 231.9 271 56.1
Zm00001eb056020 Zea mays HOM05D007224 ORTHO05D009169 5.0e-58 228.8 240 52.9
HPP92_007712 Vanilla planifolia HOM05D007224 ORTHO05D009169 2.3e-55 219.9 267 47.6
SGA_v2.0_scaffold238G43907 Striga asiatica HOM05D007224 ORTHO05D009169 5.1e-55 218.8 240 50.0
Nitab4.5_0010252g0010 Nicotiana tabacum HOM05D007224 ORTHO05D009169 2.6e-51 206.5 274 49.3
Os03g0729100 Oryza sativa ssp. japonica HOM05D007224 ORTHO05D009169 7.7e-51 204.9 182 57.1
Actinidia19293 Actinidia chinensis HOM05D007224 ORTHO05D009169 6.1e-48 195.3 121 78.5
Sed0020426 Sechium edule HOM05D007224 ORTHO05D009169 5.1e-47 192.2 167 59.3
ECA232G4225 Erigeron canadensis HOM05D007224 ORTHO05D009169 6.7e-47 191.8 138 66.7
Mapoly0039s0075 Marchantia polymorpha HOM05D007224 ORTHO05D009169 2.6e-46 189.9 176 54.5
CDE07G0245 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 4.4e-46 189.1 199 52.8
SMO147G0155 Selaginella moellendorffii HOM05D007224 ORTHO05D009169 1.4e-44 184.1 181 51.4
Haze_22389 Corylus avellana HOM05D007224 ORTHO05D009169 3.1e-44 183.0 201 56.7
Pp3c6_15140 Physcomitrium patens HOM05D007224 ORTHO05D009169 1.2e-43 181.0 183 50.8
Glyma.14G089100 Glycine max HOM05D007224 ORTHO05D009169 4.8e-37 159.1 92 87.0
CBR_g45556 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-36 157.5 183 46.4
Cre13.g569250 Chlamydomonas reinhardtii HOM05D007224 ORTHO05D009169 8.8e-31 138.3 197 44.2
Cpa.g.sc2059.2 Carica papaya HOM05D007224 ORTHO05D009169 3.4e-30 136.3 159 50.9
AUR62024535 Chenopodium quinoa HOM05D007224 ORTHO05D009169 6.3e-29 132.1 81 76.5
AUR62033890 Chenopodium quinoa HOM05D007224 ORTHO05D009169 2.7e-27 126.7 116 59.5
Zm00001eb035950 Zea mays HOM05D007224 ORTHO05D009169 4.4e-22 109.4 76 65.8
MCO05G240 Micromonas commoda HOM05D007224 ORTHO05D009169 2.1e-16 90.5 152 37.5
Zm00001eb141580 Zea mays HOM05D007224 ORTHO05D445531 1.7e-13 80.9 95 46.3
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 8.6e-10 68.6 42 76.2


User provided reference genes

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