Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 8.6e-63 243.4 118 100.0
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 4.9e-34 147.9 103 74.8
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 2.1e-32 142.5 98 76.5
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 3.5e-32 141.7 118 66.1
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 1.3e-31 139.8 121 67.8
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 8.6e-31 137.1 121 66.9
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 1.4e-28 129.8 117 64.1
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 4.0e-28 128.3 119 63.9
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 8.9e-28 127.1 121 60.3
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 1.1e-25 120.2 119 57.1
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 6.0e-24 114.4 121 57.9
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 5.1e-23 111.3 120 54.2
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 1.5e-22 109.8 120 53.3
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 1.9e-22 109.4 121 57.9
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 4.3e-22 108.2 111 59.5
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 4.3e-22 108.2 101 61.4
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 1.6e-21 106.3 118 55.1
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 6.2e-21 104.4 129 52.7
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 8.1e-21 104.0 118 55.9
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 4.0e-20 101.7 118 55.1
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 5.3e-20 101.3 119 52.1
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 7.6e-19 97.4 114 51.8
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 9.9e-19 97.1 113 57.5
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 6.4e-18 94.4 120 50.8
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 1.9e-17 92.8 118 50.8
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 7.1e-17 90.9 88 64.8
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 1.2e-16 90.1 125 50.4
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 2.7e-16 89.0 112 50.9
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 3.9e-15 85.1 99 54.5
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 6.7e-15 84.3 108 51.9
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 6.7e-15 84.3 115 47.8
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 8.7e-15 84.0 87 57.5
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 3.3e-14 82.0 97 52.6
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 5.6e-14 81.3 129 45.7
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 5.6e-14 81.3 129 45.7
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 5.6e-14 81.3 129 45.7
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 5.6e-14 81.3 70 64.3
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 1.6e-13 79.7 129 45.7
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 1.6e-13 79.7 116 49.1
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 2.1e-13 79.3 118 46.6
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 2.1e-13 79.3 113 48.7
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 6.2e-13 77.8 95 51.6
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 8.1e-13 77.4 97 51.5
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 1.4e-12 76.6 100 51.0
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 1.8e-12 76.3 100 51.0
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 2.4e-12 75.9 100 51.0
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 1.5e-11 73.2 89 48.3
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 1.5e-11 73.2 127 44.1
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 2.0e-11 72.8 72 59.7
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 2.6e-11 72.4 89 52.8
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 9.9e-11 70.5 89 50.6
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.3e-10 70.1 115 40.0
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 2.2e-10 69.3 106 49.1
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 2.2e-10 69.3 99 47.5
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 2.9e-10 68.9 106 49.1
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 3.8e-10 68.6 118 44.1
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 6.4e-10 67.8 95 47.4
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 6.4e-10 67.8 140 38.6
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 6.4e-10 67.8 75 54.7
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 8.4e-10 67.4 105 47.6
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 8.4e-10 67.4 119 42.9
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 8.4e-10 67.4 105 47.6
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 8.4e-10 67.4 105 47.6
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 8.4e-10 67.4 80 51.2
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 1.9e-09 66.2 84 51.2
Sed0022272 Sechium edule HOM05D007325 ORTHO05D009251 2.4e-09 65.9 97 44.3
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 7.1e-09 64.3 106 46.2
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 9.3e-09 63.9 89 47.2
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 1.2e-08 63.5 76 48.7
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 1.2e-08 63.5 96 46.9
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.2e-08 63.5 92 48.9
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 1.2e-08 63.5 73 56.2
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 1.2e-08 63.5 77 50.6
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 1.6e-08 63.2 108 47.2
AL6G38400 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 1.6e-08 63.2 96 44.8
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 2.1e-08 62.8 108 42.6
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 2.7e-08 62.4 96 45.8
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 2.7e-08 62.4 101 41.6
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 2.7e-08 62.4 113 41.6
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 4.6e-08 61.6 117 42.7
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 4.6e-08 61.6 117 42.7
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 4.6e-08 61.6 117 42.7
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 4.6e-08 61.6 106 42.5
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 7.9e-08 60.8 108 45.4
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 7.9e-08 60.8 99 46.5
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 1.0e-07 60.5 91 46.2
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 1.3e-07 60.1 65 52.3
Sp2g21390 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.3e-07 60.1 107 40.2
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 2.3e-07 59.3 46 63.0
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 2.3e-07 59.3 113 40.7
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 5.1e-07 58.2 85 45.9
C09p06380 Brassica napus HOM05D007325 ORTHO05D009251 8.7e-07 57.4 93 39.8
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 8.7e-07 57.4 61 52.5
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 1.5e-06 56.6 71 49.3
A06p36820 Brassica napus HOM05D007325 ORTHO05D009251 1.9e-06 56.2 84 41.7
BolC9t53557H Brassica oleracea HOM05D007325 ORTHO05D009251 2.5e-06 55.8 107 36.4
BraA06t26608Z Brassica rapa HOM05D007325 ORTHO05D009251 2.5e-06 55.8 84 41.7
BcaC04g23624 Brassica carinata HOM05D007325 ORTHO05D009251 4.3e-06 55.1 93 38.7
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 4.3e-06 55.1 106 43.4
C07p41670 Brassica napus HOM05D007325 ORTHO05D009251 5.6e-06 54.7 84 40.5
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 5.6e-06 54.7 98 40.8
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 7.4e-06 54.3 67 52.2


User provided reference genes

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