Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 7.2e-248 860.1 440 100.0
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 3.9e-161 572.0 463 66.1
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 6.7e-161 571.2 451 69.0
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 2.4e-158 562.8 441 70.3
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 6.5e-156 554.7 415 69.9
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 1.1e-155 553.9 454 66.3
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 1.8e-153 546.6 430 67.9
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 3.9e-153 545.4 447 62.9
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 7.4e-152 541.2 416 66.3
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.1e-150 535.8 447 62.6
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.1e-150 535.8 448 62.5
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 3.1e-150 535.8 453 64.5
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 5.3e-150 535.0 434 63.6
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 9.1e-150 534.3 450 64.0
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 5.9e-149 531.6 449 63.3
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 7.7e-149 531.2 414 66.7
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.0e-148 530.8 448 61.8
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 1.7e-148 530.0 442 64.7
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.2e-146 523.9 418 65.1
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 1.2e-146 523.9 437 63.8
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 1.6e-146 523.5 407 65.8
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 2.7e-146 522.7 437 63.8
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 7.9e-146 521.2 413 67.1
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 3.0e-145 519.2 443 63.4
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 5.1e-145 518.5 445 61.8
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 4.4e-144 515.4 412 64.6
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.7e-143 513.5 387 65.4
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.7e-143 513.5 412 64.8
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 1.7e-143 513.5 442 60.2
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 4.8e-143 511.9 412 64.3
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 1.4e-142 510.4 426 62.0
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 2.4e-142 509.6 439 62.0
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 4.1e-142 508.8 412 63.8
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 7.0e-142 508.1 414 62.6
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 3.8e-140 502.3 458 60.5
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 1.9e-139 500.0 393 65.6
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 2.1e-138 496.5 456 59.4
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 4.8e-135 485.3 451 59.0
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 1.4e-134 483.8 404 63.1
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 8.5e-132 474.6 412 59.7
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 4.2e-131 472.2 343 68.8
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 4.2e-131 472.2 436 57.6
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 6.1e-130 468.4 442 57.7
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 6.8e-129 464.9 426 57.0
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 2.6e-128 463.0 440 56.1
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 4.4e-128 462.2 445 58.9
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 5.7e-128 461.8 428 57.9
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 7.5e-128 461.5 445 57.1
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 6.3e-127 458.4 441 56.7
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 8.3e-127 458.0 440 56.8
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 8.3e-127 458.0 441 56.7
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 1.4e-126 457.2 453 56.5
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 2.4e-126 456.4 441 56.7
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 3.1e-126 456.1 441 56.9
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 7.0e-126 454.9 443 56.9
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 1.2e-125 454.1 394 58.1
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.6e-125 453.8 444 57.4
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 2.0e-125 453.4 453 58.3
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 2.7e-125 453.0 441 56.5
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 2.7e-125 453.0 441 56.5
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 4.5e-125 452.2 438 53.2
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 4.5e-125 452.2 438 53.2
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 5.9e-125 451.8 427 57.6
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.0e-124 451.1 434 56.9
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 1.0e-124 451.1 447 55.9
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 1.7e-124 450.3 447 57.9
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 1.7e-124 450.3 408 58.1
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.7e-124 450.3 434 56.9
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.9e-123 446.8 458 56.3
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 2.5e-123 446.4 450 57.6
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 1.6e-122 443.7 448 53.3
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.6e-122 443.7 453 56.1
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 4.7e-122 442.2 398 59.3
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 6.1e-122 441.8 453 55.6
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 2.3e-121 439.9 398 61.1
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.7e-119 433.7 442 54.3
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 2.2e-119 433.3 456 54.6
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 2.2e-119 433.3 425 55.1
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 6.3e-119 431.8 460 54.1
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 1.1e-118 431.0 390 57.2
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 1.4e-118 430.6 445 52.4
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 1.4e-118 430.6 443 54.0
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 1.8e-118 430.3 448 55.1
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 4.1e-118 429.1 328 65.5
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 5.4e-118 428.7 453 55.0
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 7.0e-118 428.3 443 54.0
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 9.1e-118 427.9 404 57.7
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 1.6e-117 427.2 453 54.3
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 1.6e-117 427.2 453 54.3
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 5.0e-116 422.2 432 54.2
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 2.5e-115 419.9 441 51.9
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 9.5e-115 417.9 441 53.5
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 1.6e-114 417.2 377 58.1
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 4.4e-112 409.1 384 56.5
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 4.9e-111 405.6 384 55.7
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 1.7e-108 397.1 415 54.9
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 5.0e-108 395.6 415 54.5
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 5.6e-107 392.1 347 57.6
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 1.2e-106 391.0 347 59.7
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 1.4e-105 387.5 416 51.4
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 2.0e-104 383.6 396 53.8
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 1.9e-102 377.1 446 50.0
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 1.2e-96 357.8 426 50.5
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 1.7e-95 354.0 338 59.5
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 3.0e-92 343.2 415 47.5
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 1.9e-91 340.5 289 63.7
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 8.1e-90 335.1 255 71.0
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 1.4e-86 324.3 405 46.4
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.1e-83 314.7 349 52.4
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 2.0e-80 303.9 406 45.3
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 1.1e-78 298.1 329 52.3
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 2.3e-76 290.4 395 45.1
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 1.5e-75 287.7 227 63.4
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 9.9e-72 275.0 447 44.7
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 3.4e-64 250.0 224 60.3
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 4.5e-64 249.6 211 57.8
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 6.9e-57 225.7 279 49.5
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 5.8e-56 222.6 383 40.2
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 3.2e-54 216.9 405 37.5
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 5.5e-54 216.1 393 35.9
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 9.0e-49 198.7 399 36.6
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 3.0e-28 130.6 108 62.0
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 9.1e-25 119.0 418 28.9
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 5.0e-23 113.2 213 35.2
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 2.8e-18 97.4 173 35.8
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 1.1e-17 95.5 424 26.9
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 1.8e-17 94.7 376 27.7
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 2.4e-17 94.4 75 64.0
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 2.7e-16 90.9 163 33.7
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.2e-11 75.5 168 30.4
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 3.1e-09 67.4 70 54.3


User provided reference genes

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