Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 1.8e-111 406.0 211 100.0
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 2.7e-83 312.4 214 79.4
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 6.2e-80 301.2 212 79.2
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 2.4e-76 289.3 214 72.9
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 1.0e-74 283.9 218 71.1
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 1.0e-74 283.9 218 71.1
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 5.6e-73 278.1 215 70.2
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 4.0e-71 271.9 214 70.1
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 9.9e-70 267.3 213 71.8
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 2.4e-68 262.7 209 67.5
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 2.2e-45 186.4 185 58.9
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 7.1e-44 181.4 187 57.2
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 1.6e-43 180.3 147 66.7
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 3.5e-43 179.1 146 65.1
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.5e-43 179.1 170 57.1
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 6.7e-42 174.9 166 62.0
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 8.7e-42 174.5 170 57.6
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 1.1e-41 174.1 265 43.8
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 2.5e-41 172.9 167 58.1
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 1.8e-39 166.8 184 52.7
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 4.1e-39 165.6 167 55.1
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 6.9e-39 164.9 138 67.4
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 1.2e-38 164.1 170 55.9
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 2.0e-38 163.3 146 59.6
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 2.6e-38 162.9 182 51.6
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 3.4e-38 162.5 157 56.7
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 5.9e-38 161.8 168 58.3
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 5.9e-38 161.8 280 39.3
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 7.7e-38 161.4 147 57.1
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 1.3e-37 160.6 167 53.9
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.3e-37 160.6 149 56.4
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 1.7e-37 160.2 177 49.2
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 1.7e-37 160.2 193 50.8
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.7e-37 160.2 171 52.6
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 1.7e-37 160.2 146 58.9
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 5.0e-37 158.7 156 55.8
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 5.0e-37 158.7 184 51.1
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 5.0e-37 158.7 176 53.4
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 6.5e-37 158.3 157 55.4
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 8.5e-37 157.9 177 50.8
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 1.4e-36 157.1 155 55.5
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 1.9e-36 156.8 173 50.9
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 2.5e-36 156.4 196 50.5
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 2.5e-36 156.4 182 50.0
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 3.2e-36 156.0 170 53.5
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 4.2e-36 155.6 173 51.4
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 4.2e-36 155.6 170 54.7
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 1.2e-35 154.1 162 55.6
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 6.1e-35 151.8 170 49.4
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 1.4e-34 150.6 152 53.9
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 1.4e-34 150.6 180 49.4
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.4e-34 150.6 152 52.6
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 3.9e-34 149.1 171 49.1
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 5.1e-34 148.7 172 50.6
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 5.1e-34 148.7 146 55.5
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 5.1e-34 148.7 146 57.5
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 8.8e-34 147.9 163 51.5
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 8.8e-34 147.9 150 53.3
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.5e-33 147.1 262 37.8
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.0e-33 146.7 166 48.2
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.0e-33 146.7 165 51.5
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 2.5e-33 146.4 171 48.0
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.5e-33 146.4 148 51.4
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.3e-33 145.6 166 48.8
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 4.3e-33 145.6 166 50.6
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 5.7e-33 145.2 191 45.5
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 7.4e-33 144.8 167 48.5
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 7.4e-33 144.8 175 47.4
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 9.7e-33 144.4 191 45.5
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 9.7e-33 144.4 178 48.3
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 2.2e-32 143.3 144 52.8
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 2.8e-32 142.9 145 52.4
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.8e-32 142.9 178 48.3
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 2.8e-32 142.9 191 46.1
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 3.7e-32 142.5 158 53.2
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 3.7e-32 142.5 169 50.3
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 8.2e-32 141.4 195 45.6
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 8.2e-32 141.4 179 49.7
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 1.1e-31 141.0 159 47.8
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 3.1e-31 139.4 183 45.4
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 3.1e-31 139.4 181 49.2
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 3.1e-31 139.4 173 48.6
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 5.3e-31 138.7 146 50.7
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 5.3e-31 138.7 173 50.3
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 1.2e-30 137.5 155 49.0
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 2.0e-30 136.7 186 48.9
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 3.4e-30 136.0 146 49.3
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 1.0e-29 134.4 146 50.0
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 1.7e-29 133.7 146 49.3
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 3.8e-29 132.5 177 46.3
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 1.4e-28 130.6 137 51.8
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 3.2e-28 129.4 142 49.3
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 7.2e-28 128.3 136 51.5
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 9.4e-28 127.9 135 49.6
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.6e-27 127.1 154 47.4
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 2.7e-27 126.3 270 35.9
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 7.9e-27 124.8 143 49.0
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 1.0e-26 124.4 177 46.9
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 1.0e-26 124.4 139 55.4
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 5.1e-26 122.1 146 45.9
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 5.7e-25 118.6 167 41.9
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 7.4e-25 118.2 191 39.8
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 2.8e-24 116.3 141 47.5
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 2.8e-24 116.3 261 37.2
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.1e-23 114.4 146 44.5
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 1.8e-23 113.6 168 46.4
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 9.1e-23 111.3 106 58.5
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 1.2e-22 110.9 170 43.5
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 2.6e-22 109.8 239 34.3
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.0e-21 107.8 236 33.9
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.3e-21 107.5 178 41.6
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 2.2e-21 106.7 146 44.5
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 2.2e-21 106.7 218 36.2
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 2.9e-21 106.3 181 39.2
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 6.5e-21 105.1 199 32.2
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.1e-20 104.4 227 33.5
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.1e-20 104.4 243 33.3
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 2.1e-19 100.1 146 42.5
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 6.1e-19 98.6 146 43.2
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.8e-18 97.1 160 41.2
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 8.2e-16 88.2 152 40.1
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 4.1e-15 85.9 117 43.6
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 1.3e-13 80.9 107 43.9
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 3.8e-13 79.3 129 38.8
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 5.0e-13 79.0 64 64.1
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 4.7e-11 72.4 115 42.6
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 6.8e-10 68.6 90 44.4
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.5e-09 67.4 125 40.0
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 1.7e-08 63.9 108 31.5
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 3.7e-08 62.8 93 44.1
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 3.7e-08 62.8 187 30.5
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 1.1e-07 61.2 186 24.7
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 3.1e-07 59.7 66 50.0
MBI09_g45000_MAGBIO Magnolia biondii HOM05D005242 ORTHO05D006778 4.1e-07 59.3 74 47.3
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 7.0e-07 58.5 136 33.8
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 9.1e-07 58.2 149 30.2
AL2G16910 Arabidopsis lyrata HOM05D000136 ORTHO05D000080 3.5e-06 56.2 96 35.4
Os12g0165200 Oryza sativa ssp. japonica HOM05D005242 ORTHO05D006778 5.9e-06 55.5 183 24.6


User provided reference genes

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