Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 9.6e-110 400.2 207 100.0
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 4.9e-98 361.3 206 85.4
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 4.6e-96 354.8 206 85.4
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 9.7e-94 347.1 206 82.0
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 3.1e-92 342.0 207 83.1
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 8.5e-90 334.0 207 81.6
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.1e-89 333.6 207 82.6
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.1e-86 323.6 207 83.6
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 8.2e-85 317.4 206 80.1
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 1.7e-82 309.7 211 76.8
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 4.4e-78 295.0 209 72.7
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 1.7e-77 293.1 207 76.3
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 2.8e-77 292.4 206 74.8
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 8.2e-77 290.8 206 71.8
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.1e-76 290.4 215 70.2
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.4e-76 290.0 212 70.8
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 2.4e-76 289.3 209 71.8
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 3.1e-76 288.9 212 70.8
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 3.1e-76 288.9 207 72.0
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 6.9e-76 287.7 206 74.8
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 3.4e-75 285.4 206 70.4
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 3.4e-75 285.4 206 76.2
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 4.5e-75 285.0 207 72.5
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.9e-75 284.6 209 70.3
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 1.0e-74 283.9 216 69.9
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.0e-74 283.9 207 71.5
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 1.3e-74 283.5 207 74.4
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 2.2e-74 282.7 206 69.9
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.9e-74 282.3 212 68.4
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 5.0e-74 281.6 206 69.9
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.5e-74 281.2 208 71.2
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 1.4e-73 280.0 206 72.3
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 5.5e-73 278.1 209 71.3
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 7.2e-73 277.7 206 68.4
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 7.2e-73 277.7 210 69.5
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 9.4e-73 277.3 206 74.8
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 2.1e-72 276.2 207 70.0
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 6.1e-72 274.6 198 73.2
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 1.8e-71 273.1 206 70.4
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 3.9e-71 271.9 206 71.8
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 6.7e-71 271.2 204 69.6
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 8.8e-71 270.8 206 69.9
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 1.1e-70 270.4 211 67.3
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 3.3e-70 268.9 206 68.9
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 4.4e-70 268.5 219 66.7
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 5.7e-70 268.1 196 70.4
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 9.7e-70 267.3 212 65.1
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 1.7e-69 266.5 193 72.0
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 1.7e-69 266.5 206 72.3
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 4.8e-69 265.0 206 71.8
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 6.3e-69 264.6 212 64.6
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 1.1e-68 263.8 206 69.4
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 4.1e-68 261.9 206 69.9
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.2e-67 260.4 208 68.3
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 1.6e-67 260.0 201 69.7
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 7.7e-67 257.7 203 66.0
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 1.0e-66 257.3 206 69.4
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 1.0e-66 257.3 201 69.7
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 1.0e-66 257.3 194 72.7
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 1.3e-66 256.9 206 65.5
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 1.3e-66 256.9 206 69.9
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 1.3e-66 256.9 208 67.8
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 2.2e-66 256.1 213 68.1
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 2.9e-66 255.8 198 72.7
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 3.8e-66 255.4 197 72.1
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 5.0e-66 255.0 199 71.9
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 5.0e-66 255.0 196 71.9
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 6.5e-66 254.6 208 67.3
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 1.1e-65 253.8 201 68.7
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 1.1e-65 253.8 198 68.2
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 1.5e-65 253.4 206 68.4
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 2.5e-65 252.7 197 72.1
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 3.2e-65 252.3 204 69.1
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 9.4e-65 250.8 188 67.6
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 1.2e-64 250.4 134 88.1
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 1.2e-64 250.4 134 88.1
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 2.1e-64 249.6 211 64.9
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 3.6e-64 248.8 197 70.1
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 4.7e-64 248.4 209 63.6
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 4.7e-64 248.4 206 65.5
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 8.0e-64 247.7 209 68.9
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 1.0e-63 247.3 206 66.5
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 3.0e-63 245.7 215 65.1
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 4.0e-63 245.4 207 64.3
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 5.2e-63 245.0 189 69.8
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.0e-62 243.0 209 64.1
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 2.6e-62 242.7 209 64.1
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 3.3e-62 242.3 187 71.1
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.2e-61 239.6 209 63.6
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 3.7e-61 238.8 196 65.8
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 4.8e-61 238.4 194 64.9
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 6.3e-61 238.0 199 68.8
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 1.1e-60 237.3 146 78.1
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.1e-60 237.3 146 78.1
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 7.0e-60 234.6 206 66.5
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 9.1e-60 234.2 144 78.5
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.2e-59 233.8 146 77.4
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 2.7e-59 232.6 206 66.0
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 5.9e-59 231.5 189 68.8
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 1.0e-58 230.7 215 60.5
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.2e-58 229.6 126 84.9
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 3.8e-58 228.8 206 65.0
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 8.5e-58 227.6 214 62.6
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 2.5e-57 226.1 208 60.6
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 9.4e-57 224.2 163 69.9
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 1.6e-56 223.4 205 64.9
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 3.4e-54 215.7 110 88.2
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 4.4e-54 215.3 188 64.4
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 9.1e-52 207.6 149 69.8
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.6e-51 206.8 116 80.2
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 4.5e-51 205.3 158 72.2
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 2.3e-50 203.0 197 62.9
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 2.5e-49 199.5 112 81.2
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 1.2e-48 197.2 205 58.5
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.4e-47 193.7 165 64.2
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 5.2e-47 191.8 108 83.3
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 8.9e-47 191.0 95 90.5
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 4.4e-46 188.7 162 68.5
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.8e-44 183.3 91 91.2
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 6.6e-34 148.3 82 80.5
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 9.8e-30 134.4 206 45.1
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 4.9e-29 132.1 124 64.5
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 3.2e-28 129.4 101 56.4
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 9.2e-28 127.9 124 56.5
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 1.2e-24 117.5 59 89.8
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 2.3e-23 113.2 93 54.8
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.2e-19 100.9 105 47.6
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.7e-19 99.8 207 42.5
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 1.6e-16 90.5 83 55.4
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.9e-12 77.0 50 72.0
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 2.4e-12 76.6 113 36.3
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 3.5e-11 72.8 35 88.6
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 3.3e-09 66.2 85 43.5
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.6e-08 62.8 110 42.7
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 6.9e-07 58.5 95 53.7
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 1.5e-06 57.4 84 41.7


User provided reference genes

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