Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0003815 Lotus japonicus HOM05D006149 ORTHO05D007341 3.7e-67 258.5 170 100.0
Ca_11076_v3 Cicer arietinum L. HOM05D006149 ORTHO05D007341 1.1e-55 220.3 126 93.7
VMungo0720G1566 Vigna mungo HOM05D006149 ORTHO05D007341 1.9e-55 219.5 170 81.8
Phvul.007G040000 Phaseolus vulgaris HOM05D006149 ORTHO05D007341 4.3e-55 218.4 127 91.3
arahy.Tifrunner.gnm1.ann1.GUMB1Z Arachis hypogaea HOM05D006149 ORTHO05D007341 5.6e-55 218.0 171 81.9
arahy.Tifrunner.gnm1.ann1.0F7AFP Arachis hypogaea HOM05D006149 ORTHO05D007341 7.3e-55 217.6 172 82.0
Glyma.20G128800 Glycine max HOM05D006149 ORTHO05D007341 9.5e-55 217.2 171 84.8
Medtr1g107435 Medicago truncatula HOM05D006149 ORTHO05D007341 5.7e-52 208.0 125 91.2
Psat6g219120 Pisum sativum HOM05D006149 ORTHO05D007341 7.0e-50 201.1 120 91.7
Glyma.10G262200 Glycine max HOM05D006149 ORTHO05D007341 3.9e-48 195.3 120 85.0
Gohir.A03G186300 Gossypium hirsutum HOM05D006149 ORTHO05D007341 1.0e-45 187.2 125 80.8
COL.COLO4_32597 Corchorus olitorius HOM05D006149 ORTHO05D007341 1.4e-45 186.8 130 79.2
TWI32G0763 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 2.3e-45 186.0 127 78.7
TWI34G0529 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 6.8e-45 184.5 131 76.3
Gohir.D02G207100 Gossypium hirsutum HOM05D006149 ORTHO05D007341 1.5e-44 183.3 123 80.5
Gorai.005G235000 Gossypium raimondii HOM05D006149 ORTHO05D007341 1.5e-44 183.3 123 80.5
Nn4g25119 Nelumbo nucifera HOM05D006149 ORTHO05D007341 1.7e-43 179.9 123 80.5
Nn1g04703 Nelumbo nucifera HOM05D006149 ORTHO05D007341 1.4e-42 176.8 130 76.2
Cpa.g.sc76.22 Carica papaya HOM05D006149 ORTHO05D007341 1.9e-42 176.4 136 73.5
Lalb_Chr21g0308351 Lupinus albus HOM05D006149 ORTHO05D007341 2.4e-42 176.0 122 79.5
Manes.10G076500 Manihot esculenta HOM05D006149 ORTHO05D007341 4.1e-42 175.3 125 77.6
MELO3C019546.2 Cucumis melo HOM05D006149 ORTHO05D007341 5.4e-42 174.9 127 76.4
CANSAT25G3711 Cannabis sativa HOM05D006149 ORTHO05D007341 7.0e-42 174.5 126 79.4
Potri.001G300300 Populus trichocarpa HOM05D006149 ORTHO05D007341 9.2e-42 174.1 125 76.0
Sabra09G0073900 Salix brachista HOM05D006149 ORTHO05D007341 9.2e-42 174.1 128 74.2
Hund06318 Selenicereus undatus HOM05D006149 ORTHO05D007341 9.2e-42 174.1 157 75.8
CsaV3_3G018210 Cucumis sativus L. HOM05D006149 ORTHO05D007341 1.2e-41 173.7 127 75.6
Thecc.02G107700 Theobroma cacao HOM05D006149 ORTHO05D007341 2.0e-41 172.9 126 73.8
Cfa004575 Carpinus fangiana HOM05D006149 ORTHO05D007341 4.6e-41 171.8 126 77.0
Duzib052G0317 Durio zibethinus HOM05D006149 ORTHO05D007341 4.6e-41 171.8 123 75.6
Sed0001717 Sechium edule HOM05D006149 ORTHO05D007341 1.7e-40 169.9 130 72.3
PGR142G0815 Punica granatum HOM05D006149 ORTHO05D007341 3.0e-40 169.1 129 72.9
Dinv15763 Davidia involucrata HOM05D006149 ORTHO05D007341 1.5e-39 166.8 153 70.6
MD05G1089500 Malus domestica HOM05D006149 ORTHO05D007341 1.5e-39 166.8 131 71.8
RcHm_v2.0_Chr6g0255351 Rosa chinensis HOM05D006149 ORTHO05D007341 1.5e-39 166.8 124 77.4
CDE02G2507 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.9e-39 166.4 123 78.0
Dinv42191 Davidia involucrata HOM05D006149 ORTHO05D007341 1.9e-39 166.4 131 71.0
Lj9A321G81 Lonicera japonica HOM05D006149 ORTHO05D007341 1.9e-39 166.4 122 77.0
Ciclev10029393m.g Citrus clementina HOM05D006149 ORTHO05D007341 3.3e-39 165.6 120 75.8
CDE02G4185 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 4.3e-39 165.2 108 85.2
AUR62039082 Chenopodium quinoa HOM05D006149 ORTHO05D007341 7.3e-39 164.5 134 70.1
Prupe.8G134800 Prunus persica HOM05D006149 ORTHO05D007341 1.6e-38 163.3 113 80.5
TAR628G0594 Trochodendron aralioides HOM05D006149 ORTHO05D007341 1.6e-38 163.3 122 73.8
unitig_22.g5723 Utricularia gibba HOM05D006149 ORTHO05D007341 1.6e-38 163.3 132 72.0
ClCG05G010280 Citrullus lanatus HOM05D006149 ORTHO05D007341 4.7e-38 161.8 120 74.2
Sc08g0001390 Simmondsia chinensis HOM05D006149 ORTHO05D007341 6.2e-38 161.4 134 71.6
ATR0618G054 Amborella trichopoda HOM05D006149 ORTHO05D007341 1.4e-37 160.2 119 76.5
vmacro19450 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 1.4e-37 160.2 133 67.7
THA.LOC104807242 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 1.8e-37 159.8 126 69.8
Lsat_1_v5_gn_9_111221 Lactuca sativa HOM05D006149 ORTHO05D007341 3.1e-37 159.1 156 67.9
Rhsim05G0088300 Rhododendron simsii HOM05D006149 ORTHO05D007341 4.0e-37 158.7 135 68.1
Sed0008540 Sechium edule HOM05D006149 ORTHO05D007341 8.9e-37 157.5 121 72.7
FAN20G0990 Fragaria x ananassa HOM05D006149 ORTHO05D007341 1.5e-36 156.8 124 74.2
MD05G1088900 Malus domestica HOM05D006149 ORTHO05D007341 3.4e-36 155.6 184 54.3
CDE04G1609 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 5.8e-36 154.8 132 69.7
FvH4_2g05220 Fragaria vesca HOM05D006149 ORTHO05D007341 9.8e-36 154.1 126 71.4
FAN15G1894 Fragaria x ananassa HOM05D006149 ORTHO05D007341 9.8e-36 154.1 126 71.4
FAN24G0478 Fragaria x ananassa HOM05D000289 ORTHO05D007341 9.8e-36 154.1 126 71.4
SHI05287 Sapria himalayana HOM05D006149 ORTHO05D007341 9.8e-36 154.1 125 68.8
ECA240G2462 Erigeron canadensis HOM05D006149 ORTHO05D007341 1.7e-35 153.3 161 67.1
HanXRQChr03g0070291 Helianthus annuus HOM05D006149 ORTHO05D007341 1.7e-35 153.3 127 77.2
HPP92_004777 Vanilla planifolia HOM05D006149 ORTHO05D007341 1.7e-35 153.3 126 71.4
FAN27G1351 Fragaria x ananassa HOM05D000289 ORTHO05D007341 2.9e-35 152.5 126 70.6
Migut.B00388 Erythranthe guttata HOM05D006149 ORTHO05D007341 6.4e-35 151.4 127 69.3
MSTRG.16714 Avicennia marina HOM05D006149 ORTHO05D007341 8.3e-35 151.0 156 67.3
Solyc01g107610.4 Solanum lycopersicum HOM05D006149 ORTHO05D007341 8.3e-35 151.0 112 74.1
Sabra16G0188500 Salix brachista HOM05D006149 ORTHO05D007341 2.4e-34 149.4 167 54.5
SGA_v2.0_scaffold225G43080 Striga asiatica HOM05D006149 ORTHO05D007341 2.4e-34 149.4 122 70.5
AL3G46990 Arabidopsis lyrata HOM05D006149 ORTHO05D007341 3.2e-34 149.1 132 63.6
QL11p033743 Quercus lobata HOM05D006149 ORTHO05D007341 3.2e-34 149.1 183 63.4
SalBow6G4084 Salvia bowleyana HOM05D006149 ORTHO05D007341 3.2e-34 149.1 134 65.7
CSS0036049 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 7.1e-34 147.9 127 68.5
Nitab4.5_0005392g0090 Nicotiana tabacum HOM05D006149 ORTHO05D007341 7.1e-34 147.9 98 79.6
Sopen01g049800 Solanum pennellii HOM05D006149 ORTHO05D007341 7.1e-34 147.9 112 73.2
PGSC0003DMG400025768 Solanum tuberosum HOM05D006149 ORTHO05D007341 7.1e-34 147.9 112 73.2
Thhalv10022867m.g Eutrema salsugineum HOM05D006149 ORTHO05D007341 9.2e-34 147.5 131 62.6
Sp3g28510 Schrenkiella parvula HOM05D006149 ORTHO05D007341 1.2e-33 147.1 130 63.1
Nitab4.5_0002815g0010 Nicotiana tabacum HOM05D006149 ORTHO05D007341 1.6e-33 146.7 98 78.6
CAN.G1231.7 Capsicum annuum HOM05D006149 ORTHO05D007341 3.5e-33 145.6 114 72.8
Actinidia27971 Actinidia chinensis HOM05D006149 ORTHO05D007341 1.3e-32 143.7 128 64.8
Eucgr.E02957 Eucalyptus grandis HOM05D006149 ORTHO05D007341 1.7e-32 143.3 125 66.4
Aa31LG8G13110 Aethionema arabicum HOM05D006149 ORTHO05D007341 2.3e-32 142.9 134 59.7
CiPaw.05G011400 Carya illinoinensis HOM05D006149 ORTHO05D007341 2.3e-32 142.9 111 74.8
BcaC04g22139 Brassica carinata HOM05D006149 ORTHO05D007341 3.0e-32 142.5 128 63.3
C07p08530 Brassica napus HOM05D006149 ORTHO05D007341 3.0e-32 142.5 128 63.3
BolC7t41265H Brassica oleracea HOM05D006149 ORTHO05D007341 3.0e-32 142.5 128 63.3
BcaB08g34585 Brassica carinata HOM05D006149 ORTHO05D007341 3.9e-32 142.1 154 63.6
BcaC06g36046 Brassica carinata HOM05D006149 ORTHO05D007341 3.9e-32 142.1 128 62.5
Os09g0104300 Oryza sativa ssp. japonica HOM05D006149 ORTHO05D007341 3.9e-32 142.1 86 83.7
BcaB03g16271 Brassica carinata HOM05D006149 ORTHO05D007341 8.6e-32 141.0 127 62.2
Rhsim11G0160200 Rhododendron simsii HOM05D006149 ORTHO05D007341 1.1e-31 140.6 205 52.7
PSO675G5876 Papaver somniferum HOM05D006149 ORTHO05D007341 1.5e-31 140.2 126 62.7
Aqoxy3G02908 Aquilegia oxysepala HOM05D006149 ORTHO05D007341 3.3e-31 139.0 124 63.7
AUR62010304 Chenopodium quinoa HOM05D006149 ORTHO05D007341 7.3e-31 137.9 112 69.6
Oeu017469.1 Olea europaea HOM05D006149 ORTHO05D007341 7.3e-31 137.9 119 68.9
PSO541G1364 Papaver somniferum HOM05D006149 ORTHO05D007341 9.5e-31 137.5 124 63.7
AT2G15270 Arabidopsis thaliana HOM05D006149 ORTHO05D007341 1.2e-30 137.1 123 61.8
CARHR105640 Cardamine hirsuta HOM05D006149 ORTHO05D007341 1.2e-30 137.1 124 61.3
Carub.0003s2910 Capsella rubella HOM05D006149 ORTHO05D007341 1.6e-30 136.7 122 61.5
Duzib248G1531 Durio zibethinus HOM05D006149 ORTHO05D007341 1.6e-30 136.7 127 65.4
Peaxi162Scf00016g02334 Petunia axillaris HOM05D006149 ORTHO05D007341 2.1e-30 136.3 123 64.2
THA.LOC104819555 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 2.1e-30 136.3 82 84.1
A07p05350 Brassica napus HOM05D006149 ORTHO05D007341 1.8e-29 133.3 128 60.9
BraA07t28328Z Brassica rapa HOM05D006149 ORTHO05D007341 1.8e-29 133.3 128 60.9
CANSAT25G0333 Cannabis sativa HOM05D006149 ORTHO05D007341 1.8e-29 133.3 114 67.5
Pp3c2_21780 Physcomitrium patens HOM05D006149 ORTHO05D007341 3.1e-29 132.5 101 73.3
Zm00001eb393310 Zea mays HOM05D006149 ORTHO05D007341 8.9e-29 131.0 78 83.3
AagrBONN_evm.TU.Sc2ySwM_228.2976 Anthoceros agrestis HOM05D006149 ORTHO05D007341 2.6e-28 129.4 103 69.9
SMO364G0740 Selaginella moellendorffii HOM05D006149 ORTHO05D007341 2.6e-28 129.4 86 79.1
Zm00001eb020500 Zea mays HOM05D006149 ORTHO05D007341 7.6e-28 127.9 77 81.8
SEGI_00829 Sequoiadendron giganteum HOM05D006149 ORTHO05D007341 1.4e-26 123.6 95 70.5
EL10Ac9g22279 Beta vulgaris HOM05D006149 ORTHO05D007341 7.1e-26 121.3 140 57.9
HanXRQChr02g0033021 Helianthus annuus HOM05D006149 ORTHO05D007341 7.1e-26 121.3 116 63.8
vmacro02004 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 4.6e-25 118.6 156 50.0
DCAR_001643 Daucus carota HOM05D006149 ORTHO05D007341 1.3e-24 117.1 99 68.7
Pp3c1_15220 Physcomitrium patens HOM05D006149 ORTHO05D007341 3.9e-24 115.5 93 69.9
CBR_g44544 Chara braunii HOM05D006149 ORTHO05D007341 8.6e-24 114.4 103 62.1
Ciclev10006213m.g Citrus clementina HOM05D006149 ORTHO05D007341 1.1e-21 107.5 106 56.6
Mapoly0056s0071 Marchantia polymorpha HOM05D006149 ORTHO05D007341 2.4e-21 106.3 108 57.4
Haze_10168 Corylus avellana HOM05D006149 ORTHO05D007341 8.9e-21 104.4 248 36.3
PGR042G0697 Punica granatum HOM05D006149 ORTHO05D007341 9.9e-20 100.9 80 67.5
Actinidia05494 Actinidia chinensis HOM05D006149 ORTHO05D007341 3.5e-17 92.4 88 63.6
CSS0028016 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 3.0e-16 89.4 89 61.8
TAR376G0787 Trochodendron aralioides HOM05D006149 ORTHO05D007341 1.3e-14 84.0 76 64.5
Ah.01g018230 Amaranthus hybridus HOM05D006149 ORTHO05D007341 4.8e-14 82.0 77 79.2
Cre03.g193150 Chlamydomonas reinhardtii HOM05D006149 ORTHO05D007341 8.1e-14 81.3 82 56.1
QL11p033903 Quercus lobata HOM05D006149 ORTHO05D007341 1.5e-12 77.0 72 81.9
MBI12_g27878_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 4.5e-12 75.5 89 56.2
SMO197G0096 Selaginella moellendorffii HOM05D024641 ORTHO05D007341 5.4e-10 68.6 42 78.6
MCO08G345 Micromonas commoda HOM05D006149 ORTHO05D007341 9.6e-07 57.8 67 47.8
Lsat_1_v5_gn_5_63380 Lactuca sativa HOM05D000113 ORTHO05D012184 3.7e-06 55.8 52 55.8
MBI03_g28533_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 3.7e-06 55.8 83 42.2


User provided reference genes

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