Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 4.5e-211 737.6 369 100.0
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 2.1e-176 622.5 370 83.8
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.4e-175 619.8 369 84.3
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.4e-175 619.8 369 84.3
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.7e-173 612.8 369 82.9
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 1.0e-170 603.6 369 82.4
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 3.0e-170 602.1 369 81.8
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 8.1e-168 594.0 369 80.8
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 2.0e-166 589.3 351 82.9
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 4.7e-160 568.2 362 77.6
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 3.8e-157 558.5 365 77.8
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 3.8e-157 558.5 365 77.8
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 8.7e-154 547.4 369 72.4
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.5e-153 546.6 359 73.0
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 4.3e-153 545.0 361 72.9
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 3.6e-152 542.0 361 72.6
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 1.8e-151 539.7 361 73.7
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.1e-151 538.9 357 72.3
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.1e-151 538.9 357 72.3
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.0e-151 538.5 357 72.0
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.2e-150 537.0 357 72.0
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 3.4e-150 535.4 356 73.0
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 9.9e-150 533.9 361 72.0
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 2.2e-149 532.7 362 70.7
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 3.2e-148 528.9 357 70.9
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 4.2e-148 528.5 416 64.7
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 4.2e-148 528.5 359 72.1
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 2.7e-147 525.8 355 72.4
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 7.9e-147 524.2 367 68.7
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.0e-146 523.9 357 71.1
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 8.7e-146 520.8 365 67.9
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.1e-145 520.4 361 69.5
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.5e-145 520.0 362 69.1
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.5e-145 520.0 373 66.8
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 2.8e-144 515.8 360 68.6
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 2.8e-144 515.8 365 67.9
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 4.8e-144 515.0 363 69.7
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.8e-143 513.1 363 68.3
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 2.4e-143 512.7 360 68.6
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 4.0e-143 511.9 358 69.6
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 6.9e-143 511.1 358 69.3
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 1.2e-142 510.4 358 69.0
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 2.0e-142 509.6 361 68.1
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 3.4e-142 508.8 365 67.7
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 4.5e-142 508.4 291 85.2
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 5.8e-142 508.1 361 69.5
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 7.6e-142 507.7 358 69.0
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 9.9e-142 507.3 357 67.5
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.3e-141 506.9 357 68.1
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.3e-141 506.9 361 70.4
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.9e-141 505.8 360 68.1
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 8.4e-141 504.2 357 67.5
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.1e-140 503.8 356 67.1
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 2.5e-140 502.7 359 68.0
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 4.2e-140 501.9 357 67.2
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 2.7e-139 499.2 356 67.1
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 4.6e-139 498.4 360 66.9
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 6.0e-139 498.0 356 67.4
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 6.0e-139 498.0 356 66.6
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 6.0e-139 498.0 356 67.7
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 7.9e-139 497.7 320 73.1
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.0e-138 497.3 358 67.6
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 3.9e-138 495.4 361 66.2
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 8.7e-138 494.2 355 69.0
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 1.1e-137 493.8 356 66.0
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.5e-137 493.4 392 62.5
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.5e-137 493.4 361 68.1
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.9e-137 493.0 359 66.9
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 2.5e-137 492.7 356 65.7
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 2.5e-137 492.7 356 66.0
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 2.5e-137 492.7 359 66.0
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 3.3e-137 492.3 356 66.3
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 3.3e-137 492.3 356 66.3
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.6e-137 491.5 386 62.7
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 9.6e-137 490.7 362 65.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 9.6e-137 490.7 356 66.6
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.1e-136 489.6 380 63.9
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.8e-136 489.2 386 62.4
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 3.7e-136 488.8 357 66.1
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 4.8e-136 488.4 356 66.0
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.8e-136 488.4 386 62.4
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 8.2e-136 487.6 356 66.6
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 8.2e-136 487.6 356 65.4
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 3.1e-135 485.7 394 61.7
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.0e-133 480.7 362 64.9
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 3.0e-130 469.2 396 60.6
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 4.3e-129 465.3 356 63.5
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 1.6e-128 463.4 362 63.0
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 6.3e-128 461.5 357 63.3
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.4e-127 460.3 357 64.1
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.6e-126 456.1 360 62.5
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.7e-125 453.4 327 66.7
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 2.5e-124 449.5 317 68.1
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 3.2e-124 449.1 356 61.2
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 3.2e-124 449.1 356 61.8
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 7.2e-124 448.0 351 61.5
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.6e-123 445.3 360 61.4
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.1e-121 440.7 354 61.3
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.5e-121 439.5 360 62.2
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 7.4e-121 438.0 373 62.5
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 4.8e-120 435.3 363 61.2
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 4.1e-119 432.2 362 60.2
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 5.3e-119 431.8 293 70.0
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 3.4e-118 429.1 294 72.4
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 5.0e-117 425.2 299 69.6
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.5e-116 421.8 331 62.8
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.7e-113 411.8 386 56.5
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.9e-108 396.7 295 67.8
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 1.3e-104 384.0 290 62.8
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.3e-104 384.0 286 66.1
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 7.7e-102 374.8 360 55.3
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.2e-100 369.4 357 55.2
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 5.5e-100 368.6 361 54.0
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.2e-99 367.5 286 61.9
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.4e-95 354.0 347 50.7
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.4e-95 353.2 357 50.1
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 8.5e-93 344.7 339 51.6
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 4.2e-92 342.4 359 52.6
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.2e-91 340.9 371 52.3
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 3.0e-90 336.3 316 53.5
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 5.7e-89 332.0 337 48.4
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 7.5e-89 331.6 355 51.8
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.0e-85 321.2 277 59.2
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.1e-58 231.5 154 70.1
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 7.1e-55 218.8 328 38.4
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.4e-47 194.5 135 66.7
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 8.1e-43 178.7 363 31.7
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 1.0e-37 161.8 333 34.2
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 3.6e-35 153.3 139 60.4
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-33 147.9 95 72.6
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.4e-31 139.4 198 41.4
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.7e-30 137.1 135 51.9
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.9e-28 131.0 87 69.0
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 7.4e-28 129.0 87 67.8
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 9.6e-28 128.6 98 65.3
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.8e-26 124.4 115 59.1
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.5e-25 119.8 86 66.3
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.8e-25 119.4 81 69.1
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 3.0e-21 107.1 87 62.1
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 5.1e-21 106.3 341 24.6
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 1.5e-20 104.8 110 51.8
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 1.9e-20 104.4 110 51.8
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.6e-20 102.1 73 65.8
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-19 101.3 72 66.7
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.8e-19 99.8 72 65.3
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.2e-19 99.4 72 65.3
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.2e-19 99.0 73 64.4
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-18 98.2 72 63.9
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.4e-18 97.4 74 63.5
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-17 95.1 70 61.4
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.6e-17 94.0 73 58.9
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.4e-17 93.6 73 60.3
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.8e-16 90.1 95 52.6
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 8.4e-16 89.0 104 53.8
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.6e-14 84.7 73 56.2
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 7.9e-14 82.4 73 56.2
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 3.9e-13 80.1 45 80.0
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.3e-11 72.8 50 70.0
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 3.1e-10 70.5 68 61.8
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 1.5e-09 68.2 59 61.0
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.5e-09 68.2 45 75.6
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 6.1e-06 56.2 51 56.9


User provided reference genes

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