Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 4.4e-190 667.9 370 100.0
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 6.5e-125 451.4 325 75.1
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 2.1e-123 446.4 328 73.2
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 4.4e-121 438.7 320 74.1
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 3.1e-119 432.6 328 70.1
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 2.2e-117 426.4 328 69.8
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 1.8e-114 416.8 327 68.5
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 4.5e-102 375.6 332 62.7
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 2.9e-101 372.9 325 59.1
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 3.2e-100 369.4 329 60.2
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 7.2e-100 368.2 332 61.1
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 7.2e-100 368.2 328 63.1
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 1.2e-99 367.5 329 60.8
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 3.6e-99 365.9 280 70.4
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 8.0e-99 364.8 327 59.6
arahy.Tifrunner.gnm1.ann1.3EIQ25 Arachis hypogaea HOM05D006361 ORTHO05D007824 2.8e-96 356.3 360 58.3
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 1.6e-94 350.5 327 58.4
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 7.7e-94 348.2 327 58.1
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 2.3e-93 346.7 322 59.3
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 2.9e-93 346.3 342 57.9
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 8.6e-93 344.7 322 58.1
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 4.2e-92 342.4 319 58.9
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 1.2e-91 340.9 329 56.5
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 6.1e-91 338.6 331 58.0
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 8.0e-91 338.2 332 58.7
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 1.8e-90 337.0 325 59.4
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 2.3e-90 336.7 321 56.7
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 3.0e-90 336.3 323 57.0
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 8.9e-90 334.7 331 56.2
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 2.0e-89 333.6 324 56.5
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 7.5e-89 331.6 324 56.5
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 9.8e-89 331.3 324 56.5
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 2.9e-88 329.7 323 57.0
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 4.9e-88 328.9 324 56.2
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 6.4e-88 328.6 331 55.9
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 8.3e-88 328.2 333 54.7
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 2.4e-87 326.6 324 58.6
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 3.2e-87 326.2 332 55.1
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 4.1e-87 325.9 317 57.1
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 4.1e-87 325.9 332 55.1
Dinv06050 Davidia involucrata HOM05D006361 ORTHO05D007824 5.4e-87 325.5 322 57.1
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 1.2e-86 324.3 318 55.3
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 2.7e-86 323.2 330 53.9
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 5.9e-86 322.0 327 56.3
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 1.0e-85 321.2 329 54.4
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 1.0e-85 321.2 320 55.6
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 2.9e-85 319.7 329 55.9
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 2.9e-85 319.7 344 52.9
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 3.9e-85 319.3 323 55.1
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 6.6e-85 318.5 326 52.1
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 1.1e-84 317.8 322 53.1
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 1.5e-84 317.4 326 51.8
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 2.5e-84 316.6 327 51.1
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 4.3e-84 315.8 334 55.1
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 5.6e-84 315.5 332 55.4
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 7.3e-84 315.1 324 55.6
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 9.5e-84 314.7 328 53.4
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 6.8e-82 308.5 321 51.4
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 6.8e-82 308.5 332 52.7
CAN.G282.86 Capsicum annuum HOM05D006361 ORTHO05D007824 8.9e-82 308.1 327 52.9
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 3.4e-81 306.2 444 44.6
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 4.4e-81 305.8 326 50.6
Nitab4.5_0003889g0010 Nicotiana tabacum HOM05D006361 ORTHO05D007824 5.8e-81 305.4 323 52.6
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 7.5e-81 305.1 335 51.3
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 1.7e-80 303.9 316 54.4
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 2.9e-80 303.1 327 50.5
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 3.2e-79 299.7 321 50.5
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 3.2e-79 299.7 321 50.8
ECA233G5480 Erigeron canadensis HOM05D006361 ORTHO05D007824 5.4e-79 298.9 320 52.5
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 9.2e-79 298.1 325 53.8
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 1.6e-78 297.4 323 50.8
Sopen01g014340 Solanum pennellii HOM05D006361 ORTHO05D007824 3.5e-78 296.2 327 50.8
Nitab4.5_0000944g0110 Nicotiana tabacum HOM05D006361 ORTHO05D007824 6.0e-78 295.4 328 52.1
PGSC0003DMG400030230 Solanum tuberosum HOM05D006361 ORTHO05D007824 7.8e-78 295.0 330 51.2
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 1.7e-77 293.9 321 51.4
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 1.7e-77 293.9 321 51.1
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 1.7e-77 293.9 321 51.4
Atru.chr11.1031 Acer truncatum HOM05D006361 ORTHO05D007824 2.3e-77 293.5 330 51.8
Sopen01g010510 Solanum pennellii HOM05D006361 ORTHO05D007824 3.9e-77 292.7 326 50.6
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 8.6e-77 291.6 334 49.4
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 1.5e-76 290.8 319 54.2
Lsat_1_v5_gn_8_33920 Lactuca sativa HOM05D006361 ORTHO05D007824 2.5e-76 290.0 327 52.3
HPP92_007296 Vanilla planifolia HOM05D006361 ORTHO05D007824 4.7e-75 285.8 324 48.5
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 8.9e-74 281.6 321 49.2
Os02g0672400 Oryza sativa ssp. japonica HOM05D006361 ORTHO05D007824 1.3e-72 277.7 321 49.5
ATR0807G049 Amborella trichopoda HOM05D006361 ORTHO05D007824 7.1e-71 271.9 330 48.8
CDE04G0863 Ceratophyllum demersum HOM05D006361 ORTHO05D007824 2.7e-70 270.0 327 46.5
COL.COLO4_27543 Corchorus olitorius HOM05D006361 ORTHO05D007824 1.6e-67 260.8 270 54.1
Ah.03g147180 Amaranthus hybridus HOM05D006361 ORTHO05D007824 1.4e-66 257.7 322 48.1
AUR62017787 Chenopodium quinoa HOM05D006361 ORTHO05D007824 5.8e-65 252.3 332 48.2
Hma1.2p1_0068F.1_g037190 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 2.9e-64 250.0 259 54.8
SEGI_09761 Sequoiadendron giganteum HOM05D006361 ORTHO05D007824 2.1e-62 243.8 380 41.6
CsaV3_5G012340 Cucumis sativus L. HOM05D006361 ORTHO05D007824 1.5e-57 227.6 268 50.0
arahy.Tifrunner.gnm1.ann1.10LCJA Arachis hypogaea HOM05D006361 ORTHO05D007824 4.9e-56 222.6 292 48.6
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 2.8e-51 206.8 404 36.1
Haze_10736 Corylus avellana HOM05D006361 ORTHO05D007824 1.5e-49 201.1 186 60.2
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 1.7e-45 187.6 237 46.8
Mapoly0161s0009 Marchantia polymorpha HOM05D006361 ORTHO05D007824 3.6e-43 179.9 362 34.5
Haze_10738 Corylus avellana HOM05D006361 ORTHO05D007824 1.3e-40 171.4 204 49.0
Glyma.10G280900 Glycine max HOM05D006361 ORTHO05D007824 1.7e-40 171.0 228 46.9
AagrBONN_evm.TU.Sc2ySwM_228.545 Anthoceros agrestis HOM05D006361 ORTHO05D007824 4.9e-40 169.5 352 36.1
Hund12782 Selenicereus undatus HOM05D006361 ORTHO05D007824 6.7e-37 159.1 136 64.7
VMungo0251G1708 Vigna mungo HOM05D006361 ORTHO05D007824 8.7e-29 132.1 115 60.0
Actinidia34045 Actinidia chinensis HOM05D006361 ORTHO05D007824 4.8e-27 126.3 119 55.5
MBI06_g04759_MAGBIO Magnolia biondii HOM05D006361 ORTHO05D007824 2.9e-24 117.1 90 68.9
CBR_g51236 Chara braunii HOM05D006361 ORTHO05D007824 1.6e-22 111.3 451 25.5
Pp3c10_230 Physcomitrium patens HOM05D006361 ORTHO05D007824 1.6e-22 111.3 250 32.0
Actinidia34046 Actinidia chinensis HOM05D006361 ORTHO05D007824 2.7e-22 110.5 87 67.8
Oeu038968.1 Olea europaea HOM05D006361 ORTHO05D007824 4.6e-22 109.8 177 40.7
Sabra19G0029800 Salix brachista HOM05D006361 ORTHO05D007824 1.3e-16 91.7 56 75.0
Cc00_g30730 Coffea canephora HOM05D006361 ORTHO05D007824 5.0e-16 89.7 78 60.3
Zm00001eb250300 Zea mays HOM05D006361 ORTHO05D007824 1.9e-15 87.8 71 62.0
SMO115G0015 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 7.9e-14 82.4 262 28.2
SMO166G0069 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 9.7e-12 75.5 175 29.7
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 3.1e-10 70.5 44 70.5
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 4.1e-10 70.1 50 62.0
Cc00_g15950 Coffea canephora HOM05D006361 ORTHO05D007824 3.4e-09 67.0 41 68.3
Hma1.2p1_0068F.1_g037180 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 7.7e-09 65.9 55 56.4
Cc00_g35660 Coffea canephora HOM05D006361 ORTHO05D007824 2.2e-08 64.3 40 67.5
QL03p040408 Quercus lobata HOM05D006361 ORTHO05D007824 1.1e-07 62.0 43 69.8


User provided reference genes

Program Settings