Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 7.2e-107 390.6 195 100.0
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 7.0e-54 214.5 203 59.1
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 9.2e-54 214.2 198 58.1
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.2e-53 213.8 206 59.2
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 5.6e-51 204.9 207 57.5
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.4e-49 200.3 197 59.4
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.3e-49 199.5 188 59.6
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.3e-49 199.5 200 54.0
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 6.8e-49 198.0 198 55.6
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 3.4e-48 195.7 189 59.8
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 5.8e-48 194.9 210 53.8
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 9.2e-46 187.6 197 52.8
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.2e-45 187.2 204 54.4
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.6e-45 186.8 220 53.2
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.7e-44 183.3 203 52.2
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.5e-43 180.3 203 54.2
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.9e-43 179.9 203 53.7
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 2.1e-42 176.4 191 52.4
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 8.9e-41 171.0 206 51.5
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.7e-39 166.8 186 52.7
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 2.9e-39 166.0 211 47.9
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 8.4e-39 164.5 208 48.1
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.9e-38 163.3 177 50.8
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.4e-38 162.9 153 58.8
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.2e-37 160.6 212 49.1
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.6e-37 160.2 212 49.1
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 2.1e-37 159.8 206 48.1
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.7e-37 159.5 212 48.6
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 6.0e-37 158.3 211 46.4
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 6.0e-37 158.3 204 47.5
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.8e-37 157.9 199 48.2
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 7.8e-37 157.9 206 48.5
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 3.9e-36 155.6 209 46.4
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 5.1e-36 155.2 193 46.6
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 8.6e-36 154.5 204 45.1
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 8.6e-36 154.5 211 46.0
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.6e-36 154.5 211 46.0
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.6e-36 154.5 211 46.0
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 8.6e-36 154.5 204 47.5
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-35 154.1 199 47.2
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.9e-35 153.3 211 44.5
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.9e-35 153.3 199 47.2
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 2.5e-35 152.9 200 46.5
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 5.6e-35 151.8 203 45.8
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 7.3e-35 151.4 215 44.2
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 9.6e-35 151.0 186 46.2
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.1e-34 149.8 193 45.1
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 2.8e-34 149.4 201 47.3
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 3.6e-34 149.1 211 46.0
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 3.1e-33 146.0 210 45.7
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.0e-33 145.6 203 44.8
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 5.2e-33 145.2 196 42.3
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.2e-32 144.1 211 44.5
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 3.4e-32 142.5 183 45.9
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.9e-31 139.4 203 45.3
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 2.9e-31 139.4 189 45.0
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.9e-30 136.7 114 60.5
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.4e-30 136.3 168 48.2
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 3.2e-30 136.0 202 43.1
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.2e-30 135.6 182 45.6
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.4e-30 135.2 190 43.2
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.4e-30 135.2 203 44.3
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.1e-30 134.8 190 43.7
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 7.1e-30 134.8 190 43.7
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.2e-29 134.0 224 42.4
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.1e-29 133.3 196 40.3
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.1e-29 133.3 191 44.5
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 3.5e-29 132.5 188 42.0
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.5e-29 132.5 199 40.2
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 4.6e-29 132.1 198 42.4
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.3e-28 130.6 179 43.0
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.3e-28 130.6 209 38.8
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.7e-28 130.2 173 44.5
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.3e-28 129.8 199 42.2
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 3.0e-28 129.4 207 41.1
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 3.0e-28 129.4 172 44.2
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.0e-28 129.4 204 44.1
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.9e-28 129.0 184 42.9
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 6.6e-28 128.3 175 42.3
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.9e-27 126.7 207 41.1
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 2.5e-27 126.3 232 38.8
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.5e-27 126.3 225 39.1
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 2.5e-27 126.3 202 43.6
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 2.5e-27 126.3 179 45.3
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 4.3e-27 125.6 195 40.0
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 5.6e-27 125.2 186 43.0
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 7.3e-27 124.8 189 40.7
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.3e-27 124.8 187 44.4
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.3e-27 124.8 187 44.4
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 9.6e-27 124.4 185 42.2
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.3e-26 124.0 184 43.5
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 2.1e-26 123.2 186 41.4
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.1e-26 123.2 183 41.0
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.2e-26 121.7 200 41.0
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 8.1e-26 121.3 193 42.5
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 8.1e-26 121.3 192 41.1
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.1e-25 120.9 169 47.3
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.8e-25 120.2 179 44.1
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.8e-25 120.2 189 41.3
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.4e-25 119.8 159 44.7
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.4e-25 119.8 178 43.8
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 4.0e-25 119.0 175 44.0
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.3e-25 118.6 170 42.9
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 9.0e-25 117.9 202 41.6
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.5e-24 117.1 174 42.0
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-24 117.1 171 43.3
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.5e-24 117.1 215 35.8
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.5e-24 117.1 176 41.5
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 2.0e-24 116.7 168 41.7
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 2.0e-24 116.7 178 41.6
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.4e-24 115.9 171 43.9
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.4e-24 115.9 190 40.5
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 4.5e-24 115.5 174 41.4
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 4.5e-24 115.5 190 39.5
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 4.5e-24 115.5 185 42.7
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 5.8e-24 115.2 203 40.9
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 7.6e-24 114.8 211 38.9
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.3e-23 114.0 171 42.7
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.2e-23 113.2 206 37.9
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.9e-23 112.8 206 34.5
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 8.4e-23 111.3 168 41.1
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 8.4e-23 111.3 166 41.0
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 8.4e-23 111.3 166 41.0
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-22 110.9 174 40.8
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.4e-22 110.5 170 41.8
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.9e-22 110.2 168 41.1
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.9e-22 110.2 217 38.2
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 3.2e-22 109.4 167 40.1
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 3.2e-22 109.4 216 36.6
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.2e-22 109.0 168 40.5
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 4.2e-22 109.0 166 38.0
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 5.4e-22 108.6 166 39.2
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 7.1e-22 108.2 166 41.0
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 9.3e-22 107.8 198 35.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.1e-21 106.7 217 35.9
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 2.7e-21 106.3 122 47.5
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.5e-21 105.9 151 41.7
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.0e-21 105.1 188 38.8
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 6.0e-21 105.1 169 39.1
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 6.0e-21 105.1 200 39.0
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 7.9e-21 104.8 184 39.7
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.0e-20 104.4 216 36.6
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.3e-20 104.0 182 43.4
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 3.9e-20 102.4 141 44.0
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 6.7e-20 101.7 168 43.5
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.5e-19 100.5 204 38.2
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.5e-19 100.5 193 37.3
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.5e-19 100.5 111 49.5
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 2.5e-19 99.8 158 39.9
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 2.5e-19 99.8 197 37.1
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 3.3e-19 99.4 159 39.0
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 7.4e-19 98.2 148 41.2
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 9.6e-19 97.8 141 40.4
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-18 97.1 142 40.8
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 2.1e-18 96.7 185 36.2
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 2.8e-18 96.3 185 36.2
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-17 94.4 111 46.8
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.1e-17 94.4 174 37.4
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.9e-17 91.7 120 41.7
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.6e-16 89.7 159 36.5
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.4e-16 89.4 165 38.2
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 5.8e-16 88.6 217 32.7
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 5.8e-16 88.6 217 32.7
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 7.6e-16 88.2 218 32.6
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.8e-15 85.9 274 28.8
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 4.9e-15 85.5 185 37.3
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.9e-14 83.6 176 35.2
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 2.4e-14 83.2 175 34.3
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 3.2e-14 82.8 174 35.1
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 7.1e-14 81.6 174 35.1
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-13 80.9 174 33.9
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 2.7e-13 79.7 174 33.3
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.6e-13 79.0 169 33.1
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.3e-12 77.4 173 34.1
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.3e-12 77.4 151 35.8
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 8.7e-12 74.7 130 36.9
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 8.7e-12 74.7 101 41.6
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 7.4e-11 71.6 136 36.8
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.1e-10 70.1 126 37.3
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 8.2e-10 68.2 121 38.8
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.1e-09 67.8 64 51.6
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.0e-08 63.5 119 37.8
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.7e-07 60.5 199 28.6
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.9e-07 59.7 58 51.7


User provided reference genes

Program Settings