Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 0.0e+00 1685.6 882 100.0
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 0.0e+00 1091.6 914 66.3
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 0.0e+00 1086.6 910 67.0
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 2.9e-304 1048.5 928 64.2
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 4.1e-303 1044.6 920 64.6
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 2.7e-294 1015.4 878 64.7
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 2.3e-285 985.7 1004 57.1
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 5.1e-277 958.0 920 60.5
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.5e-276 956.4 924 60.7
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 1.5e-265 919.8 919 60.4
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 9.0e-258 894.0 904 58.8
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 1.1e-141 508.4 1086 35.8
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 6.1e-137 492.7 795 42.1
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 1.8e-136 491.1 1080 36.3
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 3.6e-121 440.3 790 37.6
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 3.1e-117 427.2 922 35.4
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 9.4e-114 415.6 905 34.5
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 2.1e-113 414.5 999 34.6
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 5.2e-112 409.8 622 41.2
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 8.8e-112 409.1 767 36.2
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 3.7e-110 403.7 992 33.8
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.8e-109 401.4 808 36.8
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.4e-109 401.0 676 39.8
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 3.1e-109 400.6 771 36.3
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.1e-109 400.2 936 33.4
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 4.1e-109 400.2 781 36.6
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 7.0e-109 399.4 908 33.6
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.9e-108 396.4 1035 32.1
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.3e-107 395.2 1054 31.7
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.2e-104 383.3 899 33.8
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 6.8e-104 382.9 1012 32.8
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 4.4e-103 380.2 823 33.5
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 7.5e-103 379.4 774 35.5
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 9.8e-103 379.0 908 34.3
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 4.8e-102 376.7 1106 31.4
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 6.3e-102 376.3 946 33.0
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 1.1e-101 375.6 821 35.9
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 2.4e-101 374.4 1015 33.0
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 1.6e-100 371.7 620 38.9
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 2.7e-100 370.9 1005 32.6
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 3.5e-100 370.5 539 42.7
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 5.0e-99 366.7 711 36.6
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 1.1e-98 365.5 933 33.7
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 2.1e-97 361.3 762 35.7
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 4.0e-96 357.1 1007 32.8
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 8.9e-96 355.9 858 33.8
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 1.2e-95 355.5 775 33.5
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 2.6e-95 354.4 1035 31.3
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 2.8e-94 350.9 858 33.6
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 8.3e-94 349.4 846 33.0
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.7e-91 341.7 606 38.4
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 2.3e-91 341.3 541 40.3
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 2.5e-90 337.8 913 30.4
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 4.3e-90 337.0 1015 31.3
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 5.6e-90 336.7 990 30.3
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 6.8e-88 329.7 969 30.8
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 9.8e-87 325.9 758 33.6
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 1.9e-85 321.6 537 37.1
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 2.7e-84 317.8 782 32.2
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 1.3e-83 315.5 542 39.9
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 8.6e-83 312.8 920 32.6
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 2.5e-82 311.2 951 30.2
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 3.3e-82 310.8 526 35.4
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 4.3e-82 310.5 966 30.1
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 5.6e-82 310.1 548 35.4
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 9.5e-82 309.3 518 37.6
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 2.3e-80 304.7 749 31.4
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 8.9e-80 302.8 742 31.5
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 2.6e-79 301.2 922 30.5
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 3.7e-78 297.4 810 30.9
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 9.2e-77 292.7 177 80.2
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.2e-76 292.4 1029 28.2
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 4.6e-76 290.4 545 36.0
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 1.0e-75 289.3 954 29.8
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.3e-75 288.9 765 30.6
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.7e-75 288.5 731 30.1
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 8.6e-75 286.2 463 37.4
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 4.3e-74 283.9 845 29.8
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 9.5e-74 282.7 451 38.1
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 4.7e-73 280.4 611 32.4
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 8.1e-73 279.6 557 34.6
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 1.4e-72 278.9 848 30.0
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 5.2e-72 276.9 945 29.5
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 2.0e-71 275.0 394 40.1
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 4.4e-71 273.9 487 36.6
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 4.4e-71 273.9 770 30.9
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 1.7e-70 271.9 846 29.8
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 7.1e-69 266.5 857 29.4
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 1.3e-67 262.3 948 27.7
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 2.3e-67 261.5 881 27.8
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 5.1e-67 260.4 846 28.7
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 5.1e-67 260.4 937 29.0
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 5.6e-66 256.9 863 29.4
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 2.0e-63 248.4 997 27.9
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 3.4e-63 247.7 872 27.9
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 5.8e-63 246.9 883 28.8
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.2e-60 239.2 866 29.2
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 3.0e-59 234.6 1072 25.6
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 4.7e-57 227.3 386 37.3
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.0e-55 221.9 389 34.4
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 2.1e-52 211.8 174 55.2
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 2.0e-47 195.3 567 30.0
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 4.0e-40 171.0 387 30.2
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.5e-39 169.1 389 30.3
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 9.3e-37 159.8 520 27.3
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 3.1e-32 144.8 312 33.3
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 2.0e-31 142.1 190 43.7
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 5.1e-27 127.5 243 29.6
Psat3g054600 Pisum sativum HOM05D006048 ORTHO05D007642 4.3e-26 124.4 111 63.1
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 9.7e-26 123.2 225 31.6
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 4.8e-25 120.9 318 30.5
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 4.8e-25 120.9 714 25.9
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 8.8e-19 100.1 338 29.9
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 1.1e-18 99.8 338 29.9
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 3.4e-15 88.2 77 53.2
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 2.5e-13 82.0 187 28.9
CiPaw.08G165600 Carya illinoinensis HOM05D006048 ORTHO05D007642 8.8e-11 73.6 528 26.5
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 3.3e-10 71.6 130 40.8
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 6.3e-09 67.4 110 42.7
Psat4g159320 Pisum sativum HOM05D000515 ORTHO05D001911 5.9e-07 60.8 64 54.7


User provided reference genes

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