Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 1.6e-112 409.5 213 100.0
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 8.7e-82 307.4 217 73.7
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 1.4e-76 290.0 219 73.1
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 2.5e-76 289.3 219 71.7
Psat6g012720 Pisum sativum HOM05D006157 ORTHO05D007826 3.5e-75 285.4 220 70.0
Lalb_Chr14g0368791 Lupinus albus HOM05D006157 ORTHO05D007826 2.6e-70 269.2 215 66.0
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 6.1e-67 258.1 222 65.8
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 1.4e-66 256.9 221 66.1
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 1.3e-64 250.4 214 61.2
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 1.3e-64 250.4 216 64.4
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 8.2e-64 247.7 214 62.6
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 1.2e-62 243.8 204 61.8
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 2.0e-62 243.0 213 59.2
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 2.2e-61 239.6 205 60.5
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 2.2e-61 239.6 205 60.5
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 5.0e-61 238.4 205 59.5
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 5.5e-60 235.0 217 58.5
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 1.2e-59 233.8 215 58.1
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 7.9e-59 231.1 203 59.6
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 1.3e-56 223.8 219 56.6
CiPaw.15G061800 Carya illinoinensis HOM05D006157 ORTHO05D007826 7.0e-55 218.0 204 60.3
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 3.5e-54 215.7 204 59.8
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 6.5e-53 211.5 211 55.9
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 2.1e-51 206.5 207 53.6
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 1.4e-50 203.8 210 53.8
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 9.7e-49 197.6 204 54.4
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 1.3e-48 197.2 211 52.1
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 1.3e-48 197.2 214 55.1
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 2.8e-48 196.1 208 51.4
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 3.7e-48 195.7 216 52.8
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 8.2e-48 194.5 204 56.9
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 8.2e-48 194.5 204 56.9
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 1.4e-47 193.7 206 51.5
Eucgr.F00242 Eucalyptus grandis HOM05D006157 ORTHO05D007826 4.1e-47 192.2 206 51.0
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 7.0e-47 191.4 214 54.2
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 9.1e-47 191.0 212 49.5
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 9.1e-47 191.0 212 49.5
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.6e-46 190.3 212 49.5
PGR083G2028 Punica granatum HOM05D006157 ORTHO05D007826 2.0e-46 189.9 208 51.0
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 1.3e-45 187.2 211 47.9
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 1.7e-45 186.8 209 48.3
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.7e-45 186.8 211 47.9
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 2.9e-45 186.0 211 47.9
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 5.0e-45 185.3 209 48.3
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 6.5e-45 184.9 222 50.5
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 8.5e-45 184.5 209 47.8
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 8.5e-45 184.5 210 49.0
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 4.2e-44 182.2 208 49.5
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 5.5e-44 181.8 220 49.1
MD08G1103700 Malus domestica HOM05D006157 ORTHO05D007826 7.2e-44 181.4 207 53.1
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 1.6e-43 180.3 204 48.5
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 8.0e-43 177.9 214 54.7
FAN27G0611 Fragaria x ananassa HOM05D006157 ORTHO05D007826 3.4e-41 172.6 214 54.2
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 7.5e-41 171.4 214 51.9
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 1.4e-39 167.2 218 47.7
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 9.1e-39 164.5 200 46.0
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 2.0e-38 163.3 208 44.7
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 2.7e-38 162.9 222 45.0
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 3.8e-37 159.1 218 44.0
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 5.0e-37 158.7 225 45.8
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 5.0e-37 158.7 204 44.6
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 5.0e-37 158.7 207 44.0
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 1.5e-36 157.1 202 46.5
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 3.2e-36 156.0 207 47.3
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 5.5e-36 155.2 199 43.2
Thecc.08G011200 Theobroma cacao HOM05D006157 ORTHO05D007826 9.4e-36 154.5 156 52.6
arahy.Tifrunner.gnm1.ann1.HUL940 Arachis hypogaea HOM05D006157 ORTHO05D007826 8.0e-35 151.4 226 48.7
arahy.Tifrunner.gnm1.ann1.R9H0NA Arachis hypogaea HOM05D006157 ORTHO05D007826 8.0e-35 151.4 226 48.7
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 1.0e-34 151.0 210 41.0
EL10Ac1g01781 Beta vulgaris HOM05D006157 ORTHO05D007826 1.8e-34 150.2 223 39.9
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 1.8e-34 150.2 204 45.6
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 2.3e-34 149.8 245 42.9
AUR62022432 Chenopodium quinoa HOM05D006157 ORTHO05D007826 1.5e-33 147.1 228 40.8
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 3.4e-33 146.0 199 43.2
AUR62039307 Chenopodium quinoa HOM05D006157 ORTHO05D007826 2.2e-32 143.3 223 40.8
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 1.4e-31 140.6 201 43.3
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 7.0e-31 138.3 208 45.2
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 2.0e-30 136.7 203 41.4
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 3.5e-30 136.0 204 42.2
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 5.9e-30 135.2 211 41.7
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 1.0e-29 134.4 209 41.6
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 2.3e-29 133.3 219 39.3
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 2.9e-29 132.9 199 42.7
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 3.3e-28 129.4 205 38.0
Sopen12g030790 Solanum pennellii HOM05D006157 ORTHO05D007826 5.6e-28 128.6 205 42.9
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 8.9e-26 121.3 175 45.1
MBI02_g17343_MAGBIO Magnolia biondii HOM05D006157 ORTHO05D007826 2.0e-25 120.2 200 38.5
SalBow8G3379 Salvia bowleyana HOM05D006157 ORTHO05D007826 2.6e-25 119.8 207 42.5
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 9.8e-25 117.9 208 37.5
Aqoxy6G01361 Aquilegia oxysepala HOM05D006157 ORTHO05D007826 2.9e-24 116.3 207 37.2
A10p06400 Brassica napus HOM05D006157 ORTHO05D007826 6.4e-24 115.2 198 40.4
AL1G53700 Arabidopsis lyrata HOM05D006157 ORTHO05D007826 3.2e-23 112.8 207 39.6
Ah.05g168840 Amaranthus hybridus HOM05D006157 ORTHO05D007826 1.6e-22 110.5 179 40.8
COL.COLO4_26474 Corchorus olitorius HOM05D006157 ORTHO05D007826 2.7e-22 109.8 117 50.4
Aa31sc924G20 Aethionema arabicum HOM05D006157 ORTHO05D007826 4.6e-22 109.0 201 36.8
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 7.8e-22 108.2 168 45.8
BcaB07g33839 Brassica carinata HOM05D006157 ORTHO05D007826 1.0e-21 107.8 194 39.2
CARHR037020 Cardamine hirsuta HOM05D006157 ORTHO05D007826 3.9e-21 105.9 194 37.1
Actinidia22616 Actinidia chinensis HOM05D006157 ORTHO05D007826 5.0e-21 105.5 178 40.4
AUR62019555 Chenopodium quinoa HOM05D006157 ORTHO05D007826 5.0e-21 105.5 170 41.8
Thhalv10011797m.g Eutrema salsugineum HOM05D006157 ORTHO05D007826 6.6e-21 105.1 196 36.2
Sc02g0007020 Simmondsia chinensis HOM05D006157 ORTHO05D007826 8.6e-21 104.8 220 40.5
Sp1g34500 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.9e-20 103.6 194 38.1
SpUn0102_0020 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.9e-20 103.6 194 38.1
Migut.C00597 Erythranthe guttata HOM05D006157 ORTHO05D007826 2.5e-20 103.2 214 38.8
AT1G47410 Arabidopsis thaliana HOM05D006157 ORTHO05D007826 5.6e-20 102.1 195 35.9
PGSC0003DMG400015419 Solanum tuberosum HOM05D006157 ORTHO05D007826 9.5e-20 101.3 135 43.0
BolSC99t61279H Brassica oleracea HOM05D006157 ORTHO05D007826 2.1e-19 100.1 194 36.6
Carub.0001s3622 Capsella rubella HOM05D006157 ORTHO05D007826 3.6e-19 99.4 196 38.8
C06p01910 Brassica napus HOM05D006157 ORTHO05D007826 1.0e-18 97.8 194 36.1
Migut.N02699 Erythranthe guttata HOM05D006157 ORTHO05D007826 1.4e-18 97.4 208 33.7
PSO541G3363 Papaver somniferum HOM05D006157 ORTHO05D007826 3.1e-18 96.3 228 32.5
Duzib093G2157 Durio zibethinus HOM05D006157 ORTHO05D007826 5.2e-18 95.5 91 51.6
BcaC08g42947 Brassica carinata HOM05D006157 ORTHO05D007826 8.3e-16 88.2 89 55.1
PSO675G5393 Papaver somniferum HOM05D006157 ORTHO05D007826 6.0e-14 82.0 217 31.8
ATR0100G006 Amborella trichopoda HOM05D006157 ORTHO05D007826 1.8e-10 70.5 178 36.0
CSS0005922 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 1.8e-10 70.5 155 36.1
FvH4_2g34701 Fragaria vesca HOM05D006157 ORTHO05D007826 8.9e-10 68.2 119 47.9
unitig_22.g6773 Utricularia gibba HOM05D006157 ORTHO05D007826 1.5e-09 67.4 176 32.4
ATR0100G061 Amborella trichopoda HOM05D006157 ORTHO05D007826 7.5e-09 65.1 178 34.8


User provided reference genes

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