Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 1.4e-292 1008.8 486 100.0
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.1e-233 813.1 489 81.0
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 2.6e-230 802.0 486 79.0
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 8.3e-229 797.0 482 79.9
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 7.7e-227 790.4 475 78.7
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 7.3e-225 783.9 489 77.1
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 1.4e-223 779.6 487 77.0
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 2.9e-221 771.9 474 77.6
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 3.2e-220 768.5 474 77.6
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 1.6e-211 739.6 467 76.2
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.3e-210 736.5 491 73.1
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.3e-210 736.5 491 73.1
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 3.8e-197 691.8 486 67.5
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 8.4e-197 690.6 483 66.7
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 4.1e-196 688.3 483 65.4
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 1.9e-193 679.5 480 65.4
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.4e-191 673.3 477 64.4
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 7.6e-190 667.5 471 64.3
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 9.9e-190 667.2 471 67.3
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 1.1e-188 663.7 463 65.7
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 2.7e-187 659.1 473 67.0
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 2.7e-187 659.1 483 65.2
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 7.8e-187 657.5 484 64.3
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 2.3e-186 656.0 485 65.2
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.0e-186 655.6 474 66.5
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.9e-186 655.2 474 66.5
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 1.1e-185 653.7 489 63.2
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 1.5e-185 653.3 501 63.3
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 3.3e-185 652.1 461 65.1
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 3.1e-183 645.6 478 63.4
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 2.0e-182 642.9 474 65.0
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 1.7e-181 639.8 530 59.8
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 2.9e-181 639.0 471 63.9
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 2.9e-181 639.0 474 64.3
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.1e-180 637.1 471 65.4
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 1.1e-180 637.1 474 65.6
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 9.3e-180 634.0 482 63.5
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 1.6e-179 633.3 486 64.0
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 4.6e-179 631.7 471 65.0
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 1.0e-178 630.6 482 63.3
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 2.3e-178 629.4 480 64.0
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 3.0e-178 629.0 477 61.0
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 3.9e-178 628.6 488 61.3
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 8.7e-178 627.5 514 61.5
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 7.4e-177 624.4 468 65.0
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 7.4e-177 624.4 478 63.0
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 1.6e-176 623.2 465 63.4
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 2.8e-176 622.5 472 62.1
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 2.8e-176 622.5 513 62.0
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 3.4e-174 615.5 476 63.4
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 3.4e-174 615.5 466 64.2
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 3.8e-173 612.1 478 61.5
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 3.8e-173 612.1 465 64.3
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 1.1e-172 610.5 470 62.3
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 2.4e-172 609.4 472 62.9
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 4.2e-172 608.6 475 60.4
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.2e-171 607.1 472 62.7
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 3.5e-171 605.5 474 60.1
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 3.5e-171 605.5 480 62.9
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 7.9e-171 604.4 426 66.9
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 5.1e-170 601.7 477 60.4
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 6.7e-170 601.3 478 62.3
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 4.3e-169 598.6 472 62.3
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 1.8e-167 593.2 475 60.2
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 2.4e-167 592.8 476 60.3
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 4.0e-167 592.0 547 56.3
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 2.6e-166 589.3 474 59.1
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.8e-165 585.5 486 59.3
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 8.4e-165 584.3 486 60.5
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 3.0e-162 575.9 486 59.1
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 1.8e-159 566.6 469 58.8
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 3.4e-158 562.4 475 57.1
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 2.9e-157 559.3 470 58.1
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 1.1e-156 557.4 480 57.7
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 2.5e-156 556.2 475 58.7
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.2e-156 555.8 587 50.8
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 7.2e-156 554.7 470 57.7
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 7.9e-155 551.2 469 58.0
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 7.9e-155 551.2 469 58.0
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 2.3e-154 549.7 469 57.6
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 2.3e-154 549.7 469 57.4
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 2.5e-153 546.2 483 55.1
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.8e-152 542.0 472 58.9
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 1.1e-151 540.8 469 56.9
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 3.8e-149 532.3 474 54.6
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 3.2e-148 529.3 474 55.9
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 1.6e-147 526.9 501 50.3
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 2.0e-145 520.0 475 55.8
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 1.2e-142 510.8 474 52.1
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 7.7e-142 508.1 483 51.8
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 7.9e-139 498.0 333 67.3
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.7e-136 490.3 436 53.7
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 8.0e-131 471.5 459 53.2
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 6.5e-117 425.2 329 62.0
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 1.9e-116 423.7 354 59.6
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 5.6e-108 395.6 302 62.3
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.6e-105 386.7 293 60.4
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 2.9e-104 383.3 496 40.5
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 1.8e-98 364.0 356 51.4
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 6.6e-93 345.5 482 37.3
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 4.7e-91 339.3 492 39.2
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 5.8e-89 332.4 277 57.4
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 2.2e-88 330.5 277 57.4
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 2.3e-85 320.5 472 37.5
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.6e-83 314.3 220 63.6
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 6.2e-83 312.4 266 57.1
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 2.4e-79 300.4 290 49.3
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 1.0e-69 268.5 261 54.4
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 2.4e-66 257.3 226 57.1
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 7.4e-60 235.7 356 37.6
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 2.4e-58 230.7 213 54.5
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 1.3e-35 155.2 102 72.5
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.2e-33 148.7 350 33.7
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 2.6e-33 147.5 85 78.8
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 1.8e-26 124.8 76 72.4
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 9.1e-26 122.5 104 55.8
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.7e-22 110.9 75 65.3
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 3.3e-20 104.0 118 42.4
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.4e-18 98.6 100 45.0
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.0e-16 90.1 59 71.2
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.5e-15 87.8 59 71.2
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 4.2e-15 87.0 84 48.8
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.2e-15 86.3 53 75.5
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.2e-15 86.3 53 75.5
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.2e-14 85.5 59 71.2
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 4.0e-13 80.5 39 89.7
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 2.0e-12 78.2 75 50.7
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 5.9e-09 66.6 132 31.8
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 7.2e-07 59.7 100 43.0
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.6e-06 57.4 59 50.8
PRCOL_00006080 Prasinoderma coloniale HOM05D002042 ORTHO05D003928 6.1e-06 56.6 130 31.5


User provided reference genes

Program Settings