Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.1e-89 333.2 165 100.0
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 5.0e-61 238.0 165 72.1
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 5.0e-61 238.0 166 73.5
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 6.6e-61 237.7 162 71.0
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 1.2e-59 233.4 165 70.9
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 7.0e-55 217.6 166 67.5
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 7.8e-54 214.2 155 65.2
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 3.9e-53 211.8 168 63.1
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 1.4e-50 203.4 155 61.9
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 4.9e-48 194.9 156 63.5
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 6.4e-48 194.5 158 62.7
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.4e-47 193.4 156 62.8
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 4.6e-46 188.3 167 56.9
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 1.7e-45 186.4 126 72.2
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 6.4e-40 167.9 160 54.4
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 3.2e-39 165.6 159 54.1
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 1.2e-38 163.7 161 51.6
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.2e-38 163.7 151 53.0
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.0e-38 161.4 151 54.3
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.7e-37 159.8 153 52.9
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 2.3e-37 159.5 166 47.6
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.9e-37 158.7 152 52.6
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.1e-36 157.1 145 52.4
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.5e-36 156.8 145 52.4
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.3e-36 155.6 145 52.4
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 4.3e-36 155.2 127 54.3
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 2.1e-35 152.9 155 49.0
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 2.1e-35 152.9 134 51.5
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 2.8e-35 152.5 132 53.8
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 4.7e-35 151.8 134 54.5
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 4.4e-33 145.2 147 50.3
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 7.6e-33 144.4 141 51.1
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 3.8e-32 142.1 162 43.2
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 4.9e-32 141.7 95 62.1
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.4e-32 141.4 165 47.3
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 3.2e-31 139.0 164 43.3
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 4.2e-31 138.7 166 43.4
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 7.1e-31 137.9 136 47.1
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 9.3e-31 137.5 151 43.0
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.1e-30 136.3 144 43.8
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 2.7e-30 136.0 110 51.8
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 6.0e-30 134.8 150 44.0
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 6.0e-30 134.8 112 49.1
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 7.8e-30 134.4 168 44.6
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 7.8e-30 134.4 130 47.7
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 7.8e-30 134.4 150 44.0
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 1.0e-29 134.0 130 47.7
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 2.3e-29 132.9 174 39.1
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 2.3e-29 132.9 107 51.4
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 3.0e-29 132.5 129 45.7
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 3.0e-29 132.5 164 37.2
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.9e-29 132.1 109 50.5
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 5.1e-29 131.7 161 35.4
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 8.7e-29 131.0 107 50.5
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 8.7e-29 131.0 109 49.5
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.5e-28 130.2 130 45.4
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 1.9e-28 129.8 145 42.8
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.9e-28 129.8 117 48.7
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.9e-28 129.8 109 47.7
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 4.3e-28 128.6 176 39.2
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 4.3e-28 128.6 174 38.5
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 5.6e-28 128.3 107 46.7
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 5.6e-28 128.3 107 50.5
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 5.6e-28 128.3 105 50.5
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 5.6e-28 128.3 107 50.5
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 7.3e-28 127.9 120 48.3
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 7.3e-28 127.9 121 46.3
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 1.3e-27 127.1 135 48.9
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 1.3e-27 127.1 109 48.6
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.3e-27 127.1 143 41.3
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.3e-27 127.1 109 48.6
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 1.6e-27 126.7 155 40.0
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.6e-27 126.7 109 47.7
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 1.6e-27 126.7 133 43.6
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 2.1e-27 126.3 98 54.1
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.1e-27 126.3 128 44.5
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 2.1e-27 126.3 107 48.6
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 2.8e-27 125.9 111 54.1
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 2.8e-27 125.9 109 46.8
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 3.6e-27 125.6 121 44.6
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 3.6e-27 125.6 95 58.9
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 3.6e-27 125.6 134 49.3
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 3.6e-27 125.6 109 45.0
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 4.8e-27 125.2 98 53.1
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 4.8e-27 125.2 98 53.1
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 4.8e-27 125.2 98 53.1
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 4.8e-27 125.2 98 53.1
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 4.8e-27 125.2 109 50.5
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 4.8e-27 125.2 118 47.5
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 6.2e-27 124.8 98 54.1
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 6.2e-27 124.8 109 48.6
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 6.2e-27 124.8 123 43.9
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 6.2e-27 124.8 98 53.1
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.1e-26 124.0 126 42.9
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 1.8e-26 123.2 98 52.0
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 1.8e-26 123.2 139 41.0
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 2.4e-26 122.9 142 42.3
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 3.1e-26 122.5 98 53.1
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 3.1e-26 122.5 89 57.3
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 3.1e-26 122.5 162 37.0
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 4.0e-26 122.1 139 41.0
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 4.0e-26 122.1 139 41.0
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 4.0e-26 122.1 105 50.5
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 4.0e-26 122.1 126 42.1
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 4.0e-26 122.1 135 40.7
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 5.3e-26 121.7 98 52.0
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 5.3e-26 121.7 107 46.7
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 6.9e-26 121.3 127 47.2
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 6.9e-26 121.3 140 41.4
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 9.0e-26 120.9 98 50.0
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 9.0e-26 120.9 101 49.5
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 2.6e-25 119.4 124 42.7
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 5.8e-25 118.2 164 38.4
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 7.6e-25 117.9 92 55.4
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 9.9e-25 117.5 111 46.8
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 9.9e-25 117.5 108 47.2
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 9.9e-25 117.5 129 45.0
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.3e-24 117.1 127 46.5
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 1.3e-24 117.1 119 45.4
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 1.7e-24 116.7 99 51.5
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 2.2e-24 116.3 91 56.0
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 2.9e-24 115.9 134 41.0
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.1e-23 114.0 117 47.0
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 1.9e-23 113.2 88 53.4
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.9e-23 113.2 110 44.5
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.9e-23 113.2 90 54.4
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 2.4e-23 112.8 66 77.3
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.4e-23 112.8 99 47.5
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 3.2e-23 112.5 103 47.6
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 3.2e-23 112.5 121 40.5
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 4.2e-23 112.1 112 44.6
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 5.4e-23 111.7 104 49.0
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 5.4e-23 111.7 114 43.0
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 5.4e-23 111.7 164 40.9
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 9.3e-23 110.9 118 43.2
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 3.5e-22 109.0 110 43.6
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 6.0e-22 108.2 99 44.4
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 6.0e-22 108.2 101 41.6
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 7.9e-22 107.8 108 41.7
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 7.9e-22 107.8 106 44.3
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 7.9e-22 107.8 100 48.0
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 1.3e-21 107.1 124 40.3
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 1.3e-21 107.1 108 42.6
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.8e-21 106.7 130 43.8
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 2.3e-21 106.3 108 42.6
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 2.3e-21 106.3 108 42.6
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 2.3e-21 106.3 108 42.6
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 2.3e-21 106.3 108 42.6
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 2.3e-21 106.3 108 41.7
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 3.0e-21 105.9 89 52.8
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 3.0e-21 105.9 113 41.6
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 8.7e-21 104.4 120 41.7
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.9e-20 103.2 111 43.2
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 5.6e-20 101.7 93 46.2
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 7.4e-20 101.3 90 50.0
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 9.6e-20 100.9 107 40.2
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.3e-19 100.5 96 44.8
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.6e-19 100.1 112 42.0
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.1e-19 99.8 100 43.0
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.1e-19 99.8 102 45.1
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 4.8e-19 98.6 100 42.0
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.1e-18 97.4 117 42.7
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 3.1e-18 95.9 103 46.6
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 3.1e-18 95.9 94 44.7
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 4.0e-18 95.5 132 35.6
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 9.0e-18 94.4 132 34.8
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 5.8e-17 91.7 107 39.3
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 5.8e-17 91.7 132 39.4
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 1.3e-16 90.5 97 42.3
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 1.7e-16 90.1 116 40.5
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 3.2e-15 85.9 109 40.4
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 4.2e-15 85.5 85 44.7
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.1e-14 83.2 108 38.0
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 3.7e-11 72.4 57 52.6
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 4.0e-10 68.9 130 33.8
CANSAT54G2708 Cannabis sativa HOM05D002444 ORTHO05D004748 9.0e-10 67.8 176 33.0
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 4.5e-09 65.5 45 55.6
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 7.6e-09 64.7 101 40.6
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 2.1e-06 56.6 71 31.0
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 7.9e-06 54.7 108 30.6


User provided reference genes

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