Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 2.7e-83 312.0 160 100.0
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.7e-53 213.0 142 78.9
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 5.4e-52 208.0 151 76.2
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 8.6e-50 200.7 144 76.4
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 3.3e-49 198.7 144 73.6
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 5.6e-49 198.0 143 73.4
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 6.2e-48 194.5 145 72.4
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 3.1e-47 192.2 142 73.9
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 8.9e-47 190.7 145 70.3
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 2.1e-43 179.5 132 73.5
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 1.3e-42 176.8 122 76.2
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 4.3e-41 171.8 156 63.5
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.1e-39 167.2 121 72.7
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 3.8e-37 158.7 141 63.8
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 4.9e-37 158.3 142 59.2
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.9e-36 156.4 142 61.3
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 1.9e-36 156.4 139 61.2
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.2e-36 155.6 138 60.1
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.6e-35 153.3 143 60.8
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 2.1e-35 152.9 142 57.0
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 2.1e-35 152.9 129 61.2
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 3.5e-35 152.1 140 59.3
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 4.6e-35 151.8 138 59.4
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 7.8e-35 151.0 128 62.5
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 7.8e-35 151.0 148 59.5
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.0e-34 150.6 141 60.3
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.7e-34 149.8 143 60.1
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 2.3e-34 149.4 141 59.6
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 2.3e-34 149.4 150 58.7
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 2.3e-34 149.4 132 62.9
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 5.1e-34 148.3 141 58.2
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.6e-34 147.9 140 57.9
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 6.6e-34 147.9 140 60.7
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 8.7e-34 147.5 139 59.0
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 8.7e-34 147.5 147 60.5
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 1.1e-33 147.1 138 58.7
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 1.1e-33 147.1 136 58.8
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 4.3e-33 145.2 142 57.0
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 5.6e-33 144.8 138 58.7
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 5.6e-33 144.8 138 58.7
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 7.3e-33 144.4 138 58.7
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 7.3e-33 144.4 135 57.8
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 7.3e-33 144.4 142 55.6
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 9.6e-33 144.1 140 55.7
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.3e-32 143.7 140 57.9
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.3e-32 143.7 91 81.3
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 1.6e-32 143.3 139 58.3
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 2.1e-32 142.9 136 55.9
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 3.6e-32 142.1 141 54.6
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 8.1e-32 141.0 140 57.1
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.1e-31 140.6 133 58.6
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.4e-31 140.2 152 55.9
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 1.4e-31 140.2 157 51.6
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.4e-31 139.4 139 59.7
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 3.1e-31 139.0 142 57.0
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 3.1e-31 139.0 123 61.0
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 6.9e-31 137.9 138 58.7
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 6.9e-31 137.9 141 54.6
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 9.0e-31 137.5 128 59.4
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.2e-30 137.1 138 55.1
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.2e-30 137.1 123 61.0
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 1.2e-30 137.1 121 65.3
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.5e-30 136.7 129 58.1
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 4.5e-30 135.2 120 66.7
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 4.5e-30 135.2 162 50.6
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 5.8e-30 134.8 133 54.9
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 5.8e-30 134.8 129 55.8
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 1.3e-29 133.7 133 57.9
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.3e-29 133.7 137 57.7
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 2.2e-29 132.9 137 52.6
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 4.9e-29 131.7 147 52.4
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 6.4e-29 131.3 137 56.9
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 8.4e-29 131.0 141 55.3
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 1.4e-28 130.2 138 57.2
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 1.4e-28 130.2 159 52.2
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 2.4e-28 129.4 124 57.3
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 4.2e-28 128.6 123 60.2
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 7.1e-28 127.9 157 49.0
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 7.1e-28 127.9 148 50.0
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 9.3e-28 127.5 144 50.7
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.6e-27 126.7 140 53.6
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 4.6e-27 125.2 135 56.3
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 6.0e-27 124.8 133 54.9
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 6.0e-27 124.8 132 55.3
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 1.0e-26 124.0 135 51.9
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 3.0e-26 122.5 127 55.1
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 3.9e-26 122.1 144 52.1
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 6.7e-26 121.3 141 53.9
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 8.7e-26 120.9 157 48.4
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 4.3e-25 118.6 144 50.0
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 4.3e-25 118.6 138 52.2
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 7.4e-25 117.9 148 50.7
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 9.6e-25 117.5 148 50.7
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 1.3e-24 117.1 137 54.0
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.6e-24 116.7 131 54.2
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.6e-24 116.7 150 49.3
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 2.1e-24 116.3 130 50.0
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 2.1e-24 116.3 130 50.0
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 2.1e-24 116.3 130 50.0
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 3.7e-24 115.5 155 49.0
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.7e-24 115.5 136 50.0
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 6.2e-24 114.8 97 61.9
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 1.8e-23 113.2 150 48.7
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 6.9e-23 111.3 109 65.1
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 9.0e-23 110.9 161 49.1
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 1.2e-22 110.5 147 47.6
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 2.0e-22 109.8 139 51.8
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 2.6e-22 109.4 137 52.6
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 2.6e-22 109.4 140 51.4
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 7.6e-22 107.8 136 47.8
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 9.9e-22 107.5 74 71.6
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 9.9e-22 107.5 142 45.8
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 1.3e-21 107.1 146 45.9
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 2.2e-21 106.3 146 47.3
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 2.2e-21 106.3 144 47.2
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 3.8e-21 105.5 101 57.4
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 3.8e-21 105.5 101 57.4
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 3.8e-21 105.5 146 47.3
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 3.8e-21 105.5 146 44.5
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 8.4e-21 104.4 101 58.4
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 9.3e-20 100.9 90 60.0
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.6e-19 100.1 131 49.6
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 2.7e-19 99.4 158 42.4
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 2.7e-19 99.4 141 44.0
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 4.6e-19 98.6 137 44.5
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 4.6e-19 98.6 141 43.3
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 4.6e-19 98.6 141 43.3
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.0e-19 98.2 72 66.7
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 7.9e-19 97.8 166 43.4
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 3.9e-18 95.5 78 62.8
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 3.9e-18 95.5 78 62.8
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 3.9e-18 95.5 78 62.8
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 3.9e-18 95.5 76 65.8
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 5.1e-18 95.1 141 46.1
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 8.7e-18 94.4 62 77.4
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 8.7e-18 94.4 78 62.8
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.6e-16 90.1 60 73.3
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.7e-16 89.0 122 47.5
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.2e-16 88.2 62 72.6
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 8.2e-16 87.8 63 68.3
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 8.2e-16 87.8 110 49.1
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 1.8e-15 86.7 185 35.7
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 2.5e-12 76.3 141 41.1
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 3.2e-12 75.9 64 59.4
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.2e-12 75.5 71 57.7
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.2e-11 73.9 161 37.9
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 4.6e-11 72.0 95 45.3
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 5.1e-10 68.6 47 68.1
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 3.3e-09 65.9 53 62.3
Medtr3g080930 Medicago truncatula HOM05D004771 ORTHO05D005565 3.3e-09 65.9 54 61.1
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 1.3e-08 63.9 106 37.7
FAN10G1293 Fragaria x ananassa HOM05D004771 ORTHO05D005565 2.6e-06 56.2 43 62.8


User provided reference genes

Program Settings