Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 0.0e+00 1288.5 663 100.0
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 1.1e-228 797.0 689 66.9
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 4.4e-225 785.0 666 67.4
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 4.9e-224 781.6 672 66.8
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 1.9e-223 779.6 669 67.1
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 1.5e-217 760.0 672 65.3
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 3.4e-209 732.3 729 60.6
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 1.3e-208 730.3 646 65.3
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 9.6e-204 714.1 618 65.5
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 1.5e-148 530.8 672 51.8
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 5.6e-135 485.7 674 50.7
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 1.3e-115 421.4 676 43.0
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 2.2e-115 420.6 675 44.9
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 6.9e-109 399.1 678 42.5
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 2.6e-108 397.1 604 47.8
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 2.6e-108 397.1 604 47.0
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 3.4e-108 396.7 707 42.0
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 1.0e-104 385.2 662 42.1
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 5.1e-104 382.9 541 49.4
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 3.3e-103 380.2 707 41.6
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 5.6e-103 379.4 702 40.9
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 3.1e-101 373.6 711 39.7
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 6.9e-101 372.5 581 46.6
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 9.0e-101 372.1 715 40.8
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 1.2e-100 371.7 570 45.8
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 3.4e-100 370.2 677 42.5
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 4.5e-100 369.8 611 44.7
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 7.6e-100 369.0 750 39.5
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 6.4e-99 365.9 757 39.4
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 8.4e-99 365.5 582 45.7
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 1.9e-98 364.4 672 42.1
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 2.4e-98 364.0 680 41.8
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 5.4e-98 362.8 760 40.1
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 3.5e-97 360.1 701 40.2
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 6.0e-97 359.4 761 38.9
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.8e-96 357.8 581 45.6
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.1e-95 355.1 770 37.7
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 1.8e-93 347.8 696 40.7
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 7.1e-90 335.9 544 45.8
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 7.9e-89 332.4 690 37.2
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 3.3e-87 327.0 723 38.7
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 6.2e-86 322.8 705 38.4
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 9.0e-85 318.9 741 36.4
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 2.2e-83 314.3 552 44.6
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 1.1e-82 312.0 624 40.7
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.3e-80 305.1 692 37.3
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 1.3e-78 298.5 680 38.1
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 6.3e-78 296.2 692 37.0
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 8.2e-78 295.8 828 34.1
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.8e-77 294.7 672 37.2
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.1e-77 293.9 696 36.8
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.7e-75 288.1 675 37.8
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.4e-74 285.0 693 34.8
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 1.9e-74 284.6 293 58.0
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 3.2e-74 283.9 642 34.9
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 4.2e-74 283.5 809 32.8
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 2.7e-73 280.8 809 33.1
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 2.3e-72 277.7 601 38.9
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 1.4e-69 268.5 558 40.3
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.3e-67 261.9 627 34.8
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.3e-67 261.9 504 40.3
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.7e-67 261.5 663 36.2
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.8e-67 260.4 763 33.2
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 5.0e-67 260.0 691 36.6
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 4.2e-66 256.9 630 37.0
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.0e-64 252.3 663 36.5
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 8.8e-64 249.2 480 39.4
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 8.8e-64 249.2 630 37.0
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.1e-63 248.8 695 33.5
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 3.3e-63 247.3 670 36.3
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 7.4e-63 246.1 477 42.3
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.7e-62 245.0 725 33.0
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 1.7e-62 245.0 512 40.2
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.2e-62 244.6 569 37.3
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 4.1e-61 240.4 639 36.8
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 7.0e-61 239.6 663 35.3
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 9.1e-61 239.2 545 38.0
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 3.8e-59 233.8 508 37.2
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 5.0e-59 233.4 618 35.8
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 3.9e-56 223.8 531 35.4
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.1e-55 222.2 668 33.1
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 8.2e-54 216.1 631 32.5
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 8.2e-54 216.1 538 36.8
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.4e-53 215.3 522 37.0
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 2.4e-53 214.5 656 32.2
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 7.0e-53 213.0 701 33.0
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.6e-52 211.8 554 33.9
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 1.6e-52 211.8 530 33.6
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 4.5e-52 210.3 564 32.4
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.0e-51 209.1 648 32.7
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 1.9e-50 204.9 540 33.1
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 2.5e-50 204.5 529 32.7
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 1.2e-49 202.2 537 33.1
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.2e-49 202.2 506 36.4
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 1.6e-49 201.8 528 34.8
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.0e-48 199.1 504 37.1
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 1.8e-48 198.4 532 34.6
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 4.4e-47 193.7 541 33.8
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 4.4e-47 193.7 639 30.4
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 4.8e-46 190.3 537 32.6
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 4.8e-46 190.3 539 31.4
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 2.4e-45 188.0 541 32.2
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 2.4e-45 188.0 541 32.2
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 6.5e-43 179.9 515 34.4
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 2.5e-42 177.9 534 32.2
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 6.8e-40 169.9 529 31.2
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 8.8e-40 169.5 569 31.6
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 7.5e-39 166.4 611 30.9
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 9.8e-39 166.0 538 32.5
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 1.3e-38 165.6 564 31.6
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 2.8e-38 164.5 537 32.2
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.8e-37 161.8 321 38.9
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 1.0e-35 156.0 326 42.0
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 7.2e-34 149.8 565 29.4
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 1.3e-30 139.0 394 31.2
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 4.5e-28 130.6 727 26.7
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 8.6e-27 126.3 515 31.8
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 9.5e-26 122.9 698 24.5
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 3.6e-25 120.9 589 28.4
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 3.6e-25 120.9 295 38.3
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 8.0e-25 119.8 314 33.4
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.8e-24 118.6 556 28.8
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 1.5e-23 115.5 193 43.5
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 2.1e-17 95.1 372 30.1
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.2e-15 89.4 170 40.0
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 4.3e-10 70.9 276 29.3
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 3.1e-08 64.7 342 28.7


User provided reference genes

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