Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0002057 Lotus japonicus HOM05D003020 ORTHO05D003226 9.4e-134 480.3 265 100.0
Glyma.20G178000 Glycine max HOM05D003020 ORTHO05D003226 3.9e-55 219.2 272 56.2
VMungo0720G0200 Vigna mungo HOM05D003020 ORTHO05D003226 4.9e-50 202.2 268 53.4
Ca_10586_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 6.4e-50 201.8 276 50.4
Glyma.10G213000 Glycine max HOM05D003020 ORTHO05D003226 2.4e-49 199.9 257 53.3
Medtr1g095730 Medicago truncatula HOM05D003020 ORTHO05D003226 4.2e-49 199.1 274 53.3
Phvul.007G092400 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 1.5e-46 190.7 267 55.1
TPR.G1799 Trifolium pratense HOM05D003020 ORTHO05D003226 3.3e-46 189.5 283 49.5
TPR.G16980 Trifolium pratense HOM05D003020 ORTHO05D003226 4.0e-44 182.6 274 50.4
Psat6g184920 Pisum sativum HOM05D003020 ORTHO05D003226 4.6e-40 169.1 270 48.1
Lalb_Chr02g0141941 Lupinus albus HOM05D003020 ORTHO05D003226 4.2e-33 146.0 275 48.4
Lalb_Chr03g0036011 Lupinus albus HOM05D003020 ORTHO05D003226 4.6e-32 142.5 266 41.0
Lalb_Chr19g0129551 Lupinus albus HOM05D003020 ORTHO05D003226 5.1e-31 139.0 273 42.1
CiPaw.07G071600 Carya illinoinensis HOM05D003020 ORTHO05D003226 4.2e-25 119.4 281 37.0
arahy.Tifrunner.gnm1.ann1.4MY83E Arachis hypogaea HOM05D003020 ORTHO05D003226 1.1e-22 111.3 291 41.9
CiPaw.02G176000 Carya illinoinensis HOM05D003020 ORTHO05D003226 3.3e-22 109.8 280 36.4
QL08p056680 Quercus lobata HOM05D003020 ORTHO05D003226 8.2e-21 105.1 292 34.9
Prupe.2G217400 Prunus persica HOM05D003020 ORTHO05D003226 6.9e-20 102.1 302 34.4
Haze_16927 Corylus avellana HOM05D003020 ORTHO05D003226 2.6e-19 100.1 253 34.0
FvH4_7g20070 Fragaria vesca HOM05D003020 ORTHO05D003226 3.4e-19 99.8 300 32.7
FAN06G0496 Fragaria x ananassa HOM05D003020 ORTHO05D003226 4.5e-19 99.4 300 32.7
FAN10G0626 Fragaria x ananassa HOM05D003020 ORTHO05D003226 5.9e-19 99.0 291 32.0
RcHm_v2.0_Chr1g0364021 Rosa chinensis HOM05D003020 ORTHO05D003226 1.3e-18 97.8 277 32.9
FAN03G1700 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.2e-18 97.1 300 32.7
Hma1.2p1_0453F.1_g156030 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 8.5e-18 95.1 252 32.9
Cfa001601 Carpinus fangiana HOM05D003020 ORTHO05D003226 1.9e-17 94.0 271 34.3
Dinv31354 Davidia involucrata HOM05D003020 ORTHO05D003226 3.2e-17 93.2 227 35.2
TAR383G0860 Trochodendron aralioides HOM05D003020 ORTHO05D003226 5.5e-17 92.4 263 33.5
TWI38G1817 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 3.6e-16 89.7 248 31.9
TAR626G0085 Trochodendron aralioides HOM05D003020 ORTHO05D003226 4.6e-16 89.4 273 33.0
TAR626G1849 Trochodendron aralioides HOM05D003020 ORTHO05D003226 4.6e-16 89.4 265 35.8
Dinv11798 Davidia involucrata HOM05D003020 ORTHO05D003226 6.1e-16 89.0 262 36.6
Medtr4g128160 Medicago truncatula HOM05D003020 ORTHO05D003226 8.8e-15 85.1 250 32.4
Actinidia02961 Actinidia chinensis HOM05D003020 ORTHO05D003226 1.1e-14 84.7 279 30.5
TAR383G0288 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.1e-14 84.7 244 31.6
Sed0002867 Sechium edule HOM05D003020 ORTHO05D003226 1.5e-14 84.3 249 31.3
Cpa.g.sc95.49 Carica papaya HOM05D003020 ORTHO05D003226 2.5e-14 83.6 259 32.0
Dinv31353 Davidia involucrata HOM05D003020 ORTHO05D003226 5.7e-14 82.4 263 32.3
Oeu063752.1 Olea europaea HOM05D003020 ORTHO05D003226 5.7e-14 82.4 233 33.5
Actinidia02960 Actinidia chinensis HOM05D003020 ORTHO05D003226 7.4e-14 82.0 201 32.8
Lj1C921T2 Lonicera japonica HOM05D003020 ORTHO05D003226 7.4e-14 82.0 236 31.8
Sabra10G0168900 Salix brachista HOM05D003020 ORTHO05D003226 9.7e-14 81.6 251 31.9
CiPaw.01G275700 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.7e-13 80.9 262 31.7
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.7e-13 80.9 257 30.4
TAR383G0698 Trochodendron aralioides HOM05D003020 ORTHO05D003226 2.2e-13 80.5 244 32.4
Eucgr.J01114 Eucalyptus grandis HOM05D003020 ORTHO05D003226 3.7e-13 79.7 250 30.0
TAR383G0645 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.7e-13 79.7 263 31.2
Gohir.A08G084400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 6.3e-13 79.0 256 29.3
ClCG09G020480 Citrullus lanatus HOM05D003020 ORTHO05D003226 8.2e-13 78.6 291 27.8
Duzib170G0355 Durio zibethinus HOM05D003020 ORTHO05D003226 2.4e-12 77.0 249 30.5
FvH4_7g20060 Fragaria vesca HOM05D003020 ORTHO05D003226 2.4e-12 77.0 266 32.0
FAN06G2932 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.4e-12 77.0 266 32.0
FAN01G0050 Fragaria x ananassa HOM05D003020 ORTHO05D003226 3.1e-12 76.6 267 32.6
FAN01G2565 Fragaria x ananassa HOM05D003020 ORTHO05D003226 3.1e-12 76.6 267 32.6
Cfa013505 Carpinus fangiana HOM05D003020 ORTHO05D003226 4.1e-12 76.3 240 30.8
Haze_22098 Corylus avellana HOM05D003020 ORTHO05D003226 4.1e-12 76.3 238 29.4
CsaV3_5G025940 Cucumis sativus L. HOM05D003020 ORTHO05D003226 6.9e-12 75.5 251 31.1
Ca_21174_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 9.1e-12 75.1 247 30.0
Ca_21223_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 9.1e-12 75.1 247 30.0
MELO3C025508.2 Cucumis melo HOM05D003020 ORTHO05D003226 9.1e-12 75.1 252 31.0
PGR102G0964 Punica granatum HOM05D003020 ORTHO05D003226 1.2e-11 74.7 289 27.7
DCAR_019134 Daucus carota HOM05D003020 ORTHO05D003226 1.5e-11 74.3 260 30.0
Actinidia02963 Actinidia chinensis HOM05D003020 ORTHO05D003226 2.0e-11 73.9 200 31.0
Cpa.g.sc53.28 Carica papaya HOM05D003020 ORTHO05D003226 2.6e-11 73.6 261 29.9
CiPaw.08G036400 Carya illinoinensis HOM05D003020 ORTHO05D003226 2.6e-11 73.6 240 29.2
Gohir.D08G094000 Gossypium hirsutum HOM05D003020 ORTHO05D003226 2.6e-11 73.6 256 28.9
SGA_v2.0_scaffold17G07929 Striga asiatica HOM05D003020 ORTHO05D003226 5.9e-11 72.4 214 29.0
Gorai.004G031500 Gossypium raimondii HOM05D003020 ORTHO05D003226 1.0e-10 71.6 219 32.0
MD16G1257900 Malus domestica HOM05D003020 ORTHO05D003226 1.3e-10 71.2 251 30.7
TPR.G5404 Trifolium pratense HOM05D003020 ORTHO05D003226 1.3e-10 71.2 292 26.4
Lj4g0004544 Lotus japonicus HOM05D003020 ORTHO05D003226 1.7e-10 70.9 267 27.0
Gohir.D08G033900 Gossypium hirsutum HOM05D003020 ORTHO05D003226 2.9e-10 70.1 219 32.0
Glyma.17G063300 Glycine max HOM05D003020 ORTHO05D003226 3.8e-10 69.7 251 27.9
Thecc.10G069300 Theobroma cacao HOM05D003020 ORTHO05D003226 3.8e-10 69.7 278 28.8
TWI15G1220 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 5.0e-10 69.3 239 33.5
Duzib168G2116 Durio zibethinus HOM05D003020 ORTHO05D003226 6.5e-10 68.9 241 27.4
QL02p097728 Quercus lobata HOM05D003020 ORTHO05D003226 6.5e-10 68.9 245 32.2
VMungo1215G0012 Vigna mungo HOM05D003020 ORTHO05D003226 6.5e-10 68.9 228 29.8
MELO3C017464.2 Cucumis melo HOM05D003020 ORTHO05D003226 8.5e-10 68.6 248 26.2
Duzib106G1942 Durio zibethinus HOM05D003020 ORTHO05D003226 8.5e-10 68.6 283 29.3
Psat0s2889g0080 Pisum sativum HOM05D003020 ORTHO05D003226 8.5e-10 68.6 249 29.7
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 1.1e-09 68.2 245 30.2
DCAR_017969 Daucus carota HOM05D003020 ORTHO05D003226 1.4e-09 67.8 238 30.7
Duzib114G0319 Durio zibethinus HOM05D003020 ORTHO05D003226 1.4e-09 67.8 264 33.7
Potri.010G218300 Populus trichocarpa HOM05D003020 ORTHO05D003226 1.4e-09 67.8 228 27.6
Sabra08G0029900 Salix brachista HOM05D003020 ORTHO05D003226 1.4e-09 67.8 248 28.2
Cc02_g11380 Coffea canephora HOM05D003020 ORTHO05D003226 1.9e-09 67.4 272 27.2
Nitab4.5_0000233g0300 Nicotiana tabacum HOM05D012114 ORTHO05D014153 1.9e-09 67.4 243 25.9
Actinidia04141 Actinidia chinensis HOM05D003020 ORTHO05D003226 2.5e-09 67.0 259 27.8
Eucgr.C00156 Eucalyptus grandis HOM05D003020 ORTHO05D003226 2.5e-09 67.0 249 28.9
COL.COLO4_35897 Corchorus olitorius HOM05D003020 ORTHO05D003226 3.2e-09 66.6 256 30.5
Lalb_Chr12g0199391 Lupinus albus HOM05D003020 ORTHO05D003226 3.2e-09 66.6 249 28.1
Potri.008G043300 Populus trichocarpa HOM05D003020 ORTHO05D003226 4.2e-09 66.2 282 27.3
Atru.chr7.633 Acer truncatum HOM05D003020 ORTHO05D003226 5.5e-09 65.9 244 32.4
Actinidia07721 Actinidia chinensis HOM05D003020 ORTHO05D003226 5.5e-09 65.9 269 28.3
Aqoxy7G03070 Aquilegia oxysepala HOM05D003020 ORTHO05D003226 7.2e-09 65.5 246 24.0
Rhsim09G0153600 Rhododendron simsii HOM05D003020 ORTHO05D003226 7.2e-09 65.5 218 35.3
SalBow4G1965 Salvia bowleyana HOM05D003020 ORTHO05D003226 7.2e-09 65.5 240 28.3
Atru.chr12.659 Acer truncatum HOM05D003020 ORTHO05D003226 9.4e-09 65.1 268 31.0
Atru.chr12.686 Acer truncatum HOM05D003020 ORTHO05D003226 9.4e-09 65.1 268 31.0
Rhsim09G0153700 Rhododendron simsii HOM05D003020 ORTHO05D003226 1.2e-08 64.7 219 36.5
TAR636G2901 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.2e-08 64.7 275 29.5
Duzib150G1089 Durio zibethinus HOM05D003020 ORTHO05D003226 1.6e-08 64.3 266 27.8
Rhsim09G0153800 Rhododendron simsii HOM05D003020 ORTHO05D003226 1.6e-08 64.3 220 31.8
Glyma.20G083700 Glycine max HOM05D003020 ORTHO05D003226 2.1e-08 63.9 256 27.0
Hma1.2p1_1025F.1_g249270 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 2.7e-08 63.5 243 30.0
Prupe.1G086100 Prunus persica HOM05D003020 ORTHO05D003226 2.7e-08 63.5 249 28.5
Rhsim01G0004800 Rhododendron simsii HOM05D003020 ORTHO05D003226 2.7e-08 63.5 249 27.7
Actinidia07720 Actinidia chinensis HOM05D000283 ORTHO05D003226 3.6e-08 63.2 216 31.0
Gohir.A08G023400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 3.6e-08 63.2 240 30.8
Lj1C921T3 Lonicera japonica HOM05D003020 ORTHO05D003226 4.7e-08 62.8 185 40.5
Sabra16G0321600 Salix brachista HOM05D003020 ORTHO05D003226 4.7e-08 62.8 209 28.7
Sabra16G0323200 Salix brachista HOM05D003020 ORTHO05D003226 4.7e-08 62.8 209 28.7
RcHm_v2.0_Chr4g0402471 Rosa chinensis HOM05D003020 ORTHO05D003226 6.1e-08 62.4 267 27.3
Manes.07G102900 Manihot esculenta HOM05D003020 ORTHO05D003226 1.0e-07 61.6 256 28.5
FvH4_4g08220 Fragaria vesca HOM05D003020 ORTHO05D003226 1.4e-07 61.2 261 26.4
FAN12G0399 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.4e-07 61.2 261 26.4
Gorai.004G099800 Gossypium raimondii HOM05D003020 ORTHO05D003226 1.4e-07 61.2 94 38.3
Nitab4.5_0000534g0060 Nicotiana tabacum HOM05D003020 ORTHO05D003226 1.4e-07 61.2 206 28.2
TWI34G0269 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 1.4e-07 61.2 237 27.4
FAN07G1960 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.3e-07 60.5 273 27.1
Manes.14G153300 Manihot esculenta HOM05D003020 ORTHO05D003226 2.3e-07 60.5 235 28.9
Manes.14G153500 Manihot esculenta HOM05D003020 ORTHO05D003226 2.3e-07 60.5 244 27.5
MD13G1253900 Malus domestica HOM05D003020 ORTHO05D003226 3.0e-07 60.1 243 27.2
Oeu042166.1 Olea europaea HOM05D003020 ORTHO05D003226 3.0e-07 60.1 244 27.9
Sed0024933 Sechium edule HOM05D003020 ORTHO05D003226 3.0e-07 60.1 251 27.1
MSTRG.6214 Avicennia marina HOM05D003020 ORTHO05D003226 3.9e-07 59.7 167 32.3
Potri.006G168400 Populus trichocarpa HOM05D003020 ORTHO05D003226 3.9e-07 59.7 237 28.7
CiPaw.07G192300 Carya illinoinensis HOM05D003020 ORTHO05D003226 5.1e-07 59.3 248 25.8
AUR62027931 Chenopodium quinoa HOM05D027705 ORTHO05D003226 5.1e-07 59.3 237 28.7
AUR62044142 Chenopodium quinoa HOM05D027705 ORTHO05D003226 5.1e-07 59.3 237 28.7
Lj1P920T18 Lonicera japonica HOM05D003020 ORTHO05D003226 5.1e-07 59.3 194 29.4
Manes.10G043500 Manihot esculenta HOM05D003020 ORTHO05D003226 5.1e-07 59.3 249 29.3
Nitab4.5_0000233g0290 Nicotiana tabacum HOM05D012114 ORTHO05D014153 5.1e-07 59.3 240 25.8
ECA240G3460 Erigeron canadensis HOM05D003020 ORTHO05D003226 6.7e-07 58.9 256 27.0
TWI63G1498 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 6.7e-07 58.9 211 28.9
ClCG06G013330 Citrullus lanatus HOM05D003020 ORTHO05D003226 8.8e-07 58.5 268 25.7
FAN17G2997 Fragaria x ananassa HOM05D003020 ORTHO05D003226 8.8e-07 58.5 274 25.5
FAN22G0428 Fragaria x ananassa HOM05D003020 ORTHO05D003226 8.8e-07 58.5 273 26.7
Rhsim09G0153900 Rhododendron simsii HOM05D003020 ORTHO05D003226 8.8e-07 58.5 216 30.1
COL.COLO4_23725 Corchorus olitorius HOM05D003020 ORTHO05D003226 1.1e-06 58.2 273 34.8
Lsat_1_v5_gn_7_54521 Lactuca sativa HOM05D003020 ORTHO05D003226 1.1e-06 58.2 148 29.7
Lj1C921T4 Lonicera japonica HOM05D003020 ORTHO05D003226 1.1e-06 58.2 159 33.3
Oeu025224.1 Olea europaea HOM05D003020 ORTHO05D003226 1.1e-06 58.2 238 28.6
CsaV3_1G031590 Cucumis sativus L. HOM05D003020 ORTHO05D003226 1.5e-06 57.8 251 25.1
DCAR_015284 Daucus carota HOM05D003020 ORTHO05D003226 1.5e-06 57.8 263 23.6
BcaNung03008 Brassica carinata HOM05D003020 ORTHO05D003226 2.0e-06 57.4 234 27.4
DCAR_006457 Daucus carota HOM05D011460 ORTHO05D010383 2.0e-06 57.4 138 34.8
Lalb_Chr07g0180461 Lupinus albus HOM05D003020 ORTHO05D003226 2.6e-06 57.0 160 31.9
Phvul.003G146000 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 4.4e-06 56.2 249 26.9
Gorai.010G204300 Gossypium raimondii HOM05D003020 ORTHO05D003226 5.7e-06 55.8 252 24.6
Peaxi162Scf00851g00012 Petunia axillaris HOM05D012114 ORTHO05D014153 5.7e-06 55.8 239 24.7
PGR044G1573 Punica granatum HOM05D003020 ORTHO05D003226 7.4e-06 55.5 287 24.4
Sed0018084 Sechium edule HOM05D003020 ORTHO05D003226 7.4e-06 55.5 245 28.6
Eucgr.J01120 Eucalyptus grandis HOM05D003020 ORTHO05D003226 9.7e-06 55.1 259 25.9
Thhalv10026023m.g Eutrema salsugineum HOM05D003020 ORTHO05D003226 9.7e-06 55.1 234 25.2


User provided reference genes

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