Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 8.8e-125 450.3 225 100.0
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 2.9e-104 382.1 226 86.3
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 3.6e-102 375.2 225 84.9
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 2.3e-101 372.5 229 83.4
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 3.0e-101 372.1 225 84.4
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 2.6e-100 369.0 230 81.7
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.8e-98 362.8 228 82.0
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.4e-98 362.5 225 82.7
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 2.4e-98 362.5 227 80.6
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 3.5e-97 358.6 224 80.4
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 3.5e-97 358.6 224 80.4
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 7.3e-95 350.9 226 76.5
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 9.5e-95 350.5 223 78.5
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 2.1e-94 349.4 226 76.1
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 2.1e-94 349.4 224 76.3
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.0e-93 347.1 224 76.8
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 8.9e-93 344.0 224 77.2
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 4.4e-92 341.7 218 73.4
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 4.4e-92 341.7 223 75.8
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 9.8e-92 340.5 212 77.8
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 1.3e-91 340.1 226 74.8
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 1.3e-91 340.1 230 73.5
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.3e-91 340.1 216 75.0
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.2e-91 339.3 224 76.3
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 2.2e-91 339.3 225 73.8
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 3.7e-91 338.6 231 73.6
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 6.4e-91 337.8 225 75.1
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 8.3e-91 337.4 220 76.8
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 8.3e-91 337.4 225 75.1
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.1e-90 337.0 224 75.9
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 1.1e-90 337.0 226 72.6
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 1.4e-90 336.7 225 76.0
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 1.9e-90 336.3 225 74.7
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.9e-90 336.3 225 74.7
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 2.4e-90 335.9 227 75.3
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 4.1e-90 335.1 219 75.8
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 5.4e-90 334.7 225 74.7
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 7.0e-90 334.3 224 75.4
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 9.2e-90 334.0 229 72.9
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.2e-89 333.6 225 73.8
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 1.2e-89 333.6 224 72.8
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 2.7e-89 332.4 227 72.7
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.7e-89 332.4 218 72.9
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 2.7e-89 332.4 224 74.1
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 4.6e-89 331.6 227 71.8
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 6.0e-89 331.3 227 75.3
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.8e-89 330.9 226 73.0
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.0e-88 330.5 217 73.3
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 3.0e-88 328.9 229 71.6
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 5.0e-88 328.2 225 74.7
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 5.0e-88 328.2 224 74.1
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 6.6e-88 327.8 219 71.7
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 8.6e-88 327.4 225 74.2
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 8.6e-88 327.4 225 71.6
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 1.1e-87 327.0 224 71.9
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 1.1e-87 327.0 225 71.6
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.1e-87 327.0 224 72.3
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 1.9e-87 326.2 212 75.9
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.9e-87 326.2 226 72.1
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.9e-87 326.2 224 73.2
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 5.6e-87 324.7 228 71.5
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 5.6e-87 324.7 224 73.2
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.6e-87 324.7 229 68.1
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 7.3e-87 324.3 218 72.9
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 9.5e-87 323.9 226 73.0
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.2e-86 323.6 229 72.1
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.1e-86 322.8 228 68.4
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 2.1e-86 322.8 227 74.0
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 2.8e-86 322.4 218 73.9
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 4.7e-86 321.6 218 72.0
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 6.2e-86 321.2 220 72.3
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 8.1e-86 320.9 225 70.7
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 8.1e-86 320.9 225 70.7
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 8.1e-86 320.9 218 72.5
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 8.1e-86 320.9 218 71.1
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.1e-85 320.5 225 70.7
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 1.1e-85 320.5 229 69.0
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.8e-85 319.7 221 70.1
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.8e-85 319.7 223 69.5
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 2.3e-85 319.3 224 69.2
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.3e-85 319.3 226 71.7
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.3e-85 319.3 226 71.7
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 3.1e-85 318.9 221 69.7
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 3.1e-85 318.9 221 70.1
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 5.2e-85 318.2 226 71.7
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 6.8e-85 317.8 224 71.0
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 2.0e-84 316.2 226 71.2
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 1.3e-83 313.5 224 69.2
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 1.7e-83 313.2 250 65.6
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 2.2e-83 312.8 218 71.1
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 3.7e-83 312.0 227 67.4
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 6.4e-83 311.2 325 53.8
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 8.3e-83 310.8 230 66.5
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.9e-82 309.7 231 67.5
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 2.4e-82 309.3 231 67.5
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 1.2e-81 307.0 214 68.7
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 2.7e-81 305.8 223 68.2
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 4.6e-81 305.1 220 68.2
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 7.8e-81 304.3 221 68.3
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.0e-80 303.9 224 67.9
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 8.6e-80 300.8 222 65.8
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.1e-79 300.4 224 67.4
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 1.2e-78 297.0 217 66.4
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.2e-78 297.0 217 65.4
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 2.8e-78 295.8 227 65.2
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 8.9e-77 290.8 221 63.8
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 2.6e-76 289.3 223 63.7
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.8e-76 288.1 219 64.4
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 7.6e-76 287.7 223 63.2
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 2.9e-75 285.8 220 65.0
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.9e-75 285.8 219 64.4
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 8.4e-75 284.3 215 64.2
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 8.4e-75 284.3 220 65.0
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 1.1e-74 283.9 217 63.6
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.9e-74 283.1 308 50.3
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 3.9e-72 275.4 223 61.9
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 8.6e-72 274.2 217 59.9
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.5e-71 273.5 358 46.1
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 1.6e-70 270.0 215 59.5
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 2.6e-68 262.7 217 56.7
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 3.8e-67 258.8 218 56.9
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 2.7e-65 252.7 216 58.8
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 4.3e-63 245.4 171 73.1
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 5.6e-63 245.0 153 77.1
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.5e-60 236.9 176 68.8
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 2.0e-60 236.5 152 74.3
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 9.9e-60 234.2 153 73.9
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 5.4e-58 228.4 196 66.3
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 1.3e-56 223.8 152 71.1
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 1.7e-51 206.8 142 71.8
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 3.2e-50 202.6 127 78.0
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 7.1e-50 201.4 164 62.8
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 2.7e-49 199.5 130 75.4
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 3.9e-48 195.7 107 85.0
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 8.1e-46 188.0 223 49.3
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.0e-43 181.0 111 75.7
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.0e-43 181.0 111 75.7
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 1.1e-42 177.6 99 81.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 1.6e-38 163.7 95 80.0
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 5.9e-36 155.2 118 69.5
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 3.8e-35 152.5 216 38.0
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 5.0e-35 152.1 118 68.6
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 5.0e-35 152.1 112 68.8
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.2e-33 147.5 107 72.0
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.0e-32 144.4 121 65.3
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 4.1e-29 132.5 144 50.7
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 6.5e-27 125.2 87 70.1
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 3.4e-20 102.8 81 61.7
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 3.4e-20 102.8 129 51.2
MCO08G354 Micromonas commoda HOM05D004698 ORTHO05D005699 4.4e-15 85.9 218 27.5
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 3.1e-13 79.7 57 68.4
PRCOL_00002610 Prasinoderma coloniale HOM05D004698 ORTHO05D333686 2.2e-11 73.6 196 30.1
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.1e-10 71.2 61 55.7
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.2e-09 67.8 75 50.7
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 4.4e-07 59.3 48 60.4


User provided reference genes

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