Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 9.0e-240 833.2 421 100.0
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 3.0e-211 738.4 413 89.6
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 7.0e-208 727.2 414 87.4
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 2.7e-207 725.3 414 86.7
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 2.5e-205 718.8 417 85.4
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 1.6e-204 716.1 417 86.8
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 2.1e-204 715.7 421 84.3
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 3.0e-203 711.8 413 86.7
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 1.3e-201 706.4 432 82.2
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 7.7e-199 697.2 421 81.9
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 8.0e-196 687.2 417 82.3
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 1.6e-188 662.9 416 77.6
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 8.9e-187 657.1 421 76.7
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 9.2e-184 647.1 421 75.8
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 2.0e-183 646.0 413 76.5
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 2.7e-183 645.6 421 77.2
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 1.7e-182 642.9 414 75.4
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 2.3e-182 642.5 415 75.9
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 6.6e-182 641.0 414 75.4
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.1e-181 640.2 414 75.8
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 4.3e-181 638.3 413 74.8
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 1.6e-180 636.3 422 73.9
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 1.6e-180 636.3 417 74.1
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 3.6e-180 635.2 412 76.2
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 4.7e-180 634.8 502 64.7
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 1.1e-179 633.6 421 73.2
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 1.4e-179 633.3 415 74.5
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 1.8e-179 632.9 422 74.6
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 4.0e-179 631.7 430 73.3
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 8.9e-179 630.6 424 71.9
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 1.2e-178 630.2 420 74.5
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 2.2e-177 625.9 418 73.9
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 2.9e-177 625.5 421 73.2
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.7e-177 625.2 415 73.7
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 2.7e-175 619.0 443 70.7
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 1.3e-174 616.7 415 71.8
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 3.9e-174 615.1 447 69.8
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 4.3e-173 611.7 419 72.6
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 2.1e-172 609.4 415 70.6
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 4.7e-172 608.2 415 70.8
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 1.1e-171 607.1 419 70.4
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 5.2e-171 604.7 422 69.4
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 8.9e-171 604.0 423 70.2
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 7.5e-170 600.9 470 65.5
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 4.9e-169 598.2 364 79.7
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.4e-168 596.7 419 69.0
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 2.4e-168 595.9 382 77.0
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 7.1e-168 594.3 419 68.7
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 1.2e-167 593.6 410 70.5
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 1.3e-166 590.1 409 69.9
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 1.1e-165 587.0 411 70.6
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 5.6e-165 584.7 410 69.8
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 5.6e-165 584.7 414 70.8
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.1e-164 582.8 414 70.3
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 2.8e-164 582.4 490 61.6
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 3.6e-164 582.0 413 68.5
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 8.1e-164 580.9 415 69.4
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 5.8e-162 574.7 409 67.2
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 1.9e-160 569.7 362 76.0
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 7.8e-159 564.3 436 65.1
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.0e-158 563.9 395 70.1
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-157 560.5 400 70.0
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 1.6e-156 556.6 414 68.8
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 6.4e-153 544.7 441 62.6
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 1.5e-146 523.5 413 65.6
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 2.2e-145 519.6 414 63.3
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 2.4e-144 516.2 357 71.1
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 3.2e-144 515.8 335 75.2
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 3.9e-142 508.8 341 72.7
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.7e-140 502.3 330 73.6
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 4.8e-140 501.9 477 57.7
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 6.9e-139 498.0 353 68.8
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 1.2e-138 497.3 450 56.9
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 9.9e-138 494.2 436 59.2
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 4.2e-120 435.6 404 54.7
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 1.0e-118 431.0 399 54.9
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 4.8e-116 422.2 277 74.0
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.1e-115 421.0 294 71.4
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 5.3e-115 418.7 409 51.8
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 4.5e-114 415.6 279 73.8
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 7.4e-109 398.3 405 50.4
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 1.3e-108 397.5 276 69.9
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.8e-108 395.6 422 48.1
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 1.1e-107 394.4 277 69.3
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 9.7e-101 371.3 420 46.9
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 7.7e-98 361.7 413 45.3
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 9.7e-93 344.7 276 63.4
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 9.7e-93 344.7 315 56.2
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 3.2e-88 329.7 555 36.8
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 1.2e-87 327.8 274 60.6
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 6.8e-86 322.0 400 44.5
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.5e-85 320.9 230 70.4
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 2.6e-85 320.1 421 40.6
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 2.2e-84 317.0 465 39.1
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 1.8e-83 313.9 414 40.1
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 2.3e-81 307.0 252 60.3
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.3e-81 307.0 419 39.4
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 1.9e-80 303.9 194 74.7
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.4e-78 297.7 418 38.8
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 7.5e-77 292.0 426 37.8
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.4e-75 287.7 420 39.3
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 4.5e-74 282.7 190 72.6
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 4.9e-60 236.1 369 37.9
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 8.3e-60 235.3 427 33.7
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 3.9e-57 226.5 152 71.1
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 1.5e-56 224.6 168 66.7
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.9e-56 224.2 340 37.9
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 1.1e-54 218.4 198 60.6
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 1.8e-54 217.6 434 33.6
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 2.9e-52 210.3 371 35.3
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 8.1e-47 192.2 256 44.5
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 9.9e-45 185.3 376 33.2
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.2e-43 179.9 328 34.8
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 6.0e-42 176.0 114 78.1
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 2.1e-39 167.5 267 40.4
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.1e-38 163.7 125 64.8
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 6.9e-38 162.5 208 48.6
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 3.4e-37 160.2 112 69.6
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.2e-35 153.7 315 33.0
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 1.5e-32 144.8 95 75.8
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 1.9e-32 144.4 95 75.8
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.6e-31 141.4 135 51.1
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 1.8e-30 137.9 95 73.7
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.8e-30 137.9 182 41.2
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.4e-30 137.5 131 51.1
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-29 135.2 273 32.6
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.8e-29 132.9 219 37.9
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.3e-24 116.7 145 42.8
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.3e-24 116.7 227 32.2
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 1.4e-22 111.7 76 73.7
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.8e-22 111.3 55 90.9
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.2e-19 100.1 170 37.1
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.0e-17 94.0 77 51.9
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 6.7e-17 92.8 80 53.8
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.5e-16 91.7 101 39.6
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 1.1e-11 75.5 261 25.7
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 2.3e-09 67.8 85 49.4
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 3.9e-09 67.0 172 31.4
MBI05_g15354_MAGBIO Magnolia biondii HOM05D002523 ORTHO05D022880 1.1e-06 58.9 61 54.1
arahy.Tifrunner.gnm1.ann1.68D7VA Arachis hypogaea HOM05D007334 ORTHO05D011873 1.4e-06 58.5 45 66.7
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 2.4e-06 57.8 42 59.5
MBI10_g06898_MAGBIO Magnolia biondii HOM05D002523 ORTHO05D006523 6.9e-06 56.2 71 46.5


User provided reference genes

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