Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 1.5e-172 609.4 296 100.0
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 1.6e-137 493.0 293 80.9
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 2.7e-137 492.3 294 80.6
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.3e-136 490.0 296 80.1
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 8.0e-134 480.7 296 78.4
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 1.8e-133 479.6 294 77.6
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 7.7e-129 464.2 255 85.5
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 8.6e-128 460.7 290 76.2
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 3.6e-126 455.3 288 77.1
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.6e-121 439.9 316 69.3
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 1.0e-120 437.2 288 72.6
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 2.6e-116 422.5 294 69.0
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 4.4e-116 421.8 277 72.9
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 6.4e-115 417.9 277 71.1
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 3.2e-114 415.6 294 68.0
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 4.6e-113 411.8 274 71.5
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 6.0e-113 411.4 292 65.1
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.7e-112 409.8 274 71.2
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.3e-112 409.5 274 71.2
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 3.9e-112 408.7 296 66.6
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 5.0e-112 408.3 272 71.3
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 2.8e-110 402.5 277 67.1
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 8.1e-110 401.0 275 67.6
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 1.1e-109 400.6 258 72.5
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 3.1e-109 399.1 273 67.8
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 3.4e-108 395.6 275 66.9
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.1e-106 390.6 299 62.5
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.4e-106 390.2 292 64.4
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 4.1e-106 388.7 301 63.8
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 2.3e-104 382.9 276 64.5
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.3e-104 382.9 277 65.3
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 3.0e-104 382.5 274 64.2
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 3.9e-104 382.1 277 63.5
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 5.1e-104 381.7 281 63.0
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 5.1e-104 381.7 298 63.4
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 1.1e-103 380.6 271 67.9
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.5e-103 380.2 299 62.2
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 3.3e-103 379.0 301 62.8
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 5.6e-103 378.3 294 61.9
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 2.1e-102 376.3 246 70.7
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 4.7e-102 375.2 278 65.1
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 8.1e-102 374.4 276 62.7
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 8.1e-102 374.4 269 65.1
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 2.3e-101 372.9 276 62.3
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 3.1e-101 372.5 277 63.2
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 3.1e-101 372.5 292 59.9
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 3.1e-101 372.5 275 65.1
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 6.8e-101 371.3 289 64.0
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 6.8e-101 371.3 287 61.7
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 1.2e-100 370.5 270 66.3
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 7.6e-100 367.9 251 66.9
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 2.9e-99 365.9 278 61.2
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 6.4e-99 364.8 279 62.4
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.4e-98 363.6 279 60.9
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 2.4e-98 362.8 275 61.8
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 3.2e-98 362.5 271 61.6
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 4.1e-98 362.1 271 61.6
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 2.1e-97 359.8 292 61.6
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 6.0e-97 358.2 256 65.6
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 6.0e-97 358.2 272 64.0
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 6.0e-97 358.2 269 63.6
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 7.8e-97 357.8 270 61.5
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 1.0e-96 357.5 287 58.2
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 1.7e-96 356.7 265 63.4
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 8.6e-96 354.4 275 61.1
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 8.6e-96 354.4 272 62.9
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.1e-95 354.0 265 65.3
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.1e-95 354.0 256 62.9
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 1.9e-95 353.2 278 60.4
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 2.5e-95 352.8 261 62.5
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 7.3e-95 351.3 295 65.1
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 9.6e-95 350.9 260 62.3
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 3.6e-94 349.0 250 65.6
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 1.4e-93 347.1 233 67.8
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.8e-93 346.7 270 61.5
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 1.2e-92 344.0 292 57.2
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.4e-92 342.0 260 61.2
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 5.8e-92 341.7 287 56.4
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 6.4e-91 338.2 280 58.9
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 8.4e-91 337.8 248 65.7
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 1.4e-90 337.0 294 55.4
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.9e-90 336.7 275 58.9
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 2.4e-90 336.3 276 59.1
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 6.0e-89 331.6 270 57.4
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 6.0e-89 331.6 254 60.6
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 7.8e-89 331.3 255 61.2
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 2.3e-88 329.7 274 58.0
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 5.1e-88 328.6 272 58.5
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 1.3e-86 323.9 272 59.6
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 4.0e-85 318.9 273 55.7
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 1.3e-80 303.9 263 55.1
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.5e-79 299.7 243 60.1
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.7e-75 287.0 267 54.7
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 7.1e-74 281.6 270 56.7
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 9.3e-74 281.2 278 47.5
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.0e-72 277.7 294 50.0
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 4.3e-71 272.3 277 50.5
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 2.8e-70 269.6 277 50.5
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-69 267.7 278 48.6
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.8e-69 266.9 277 49.8
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 2.4e-69 266.5 280 50.0
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 3.1e-69 266.2 277 50.2
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 3.1e-69 266.2 277 50.2
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 6.9e-69 265.0 277 49.5
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-68 264.2 279 50.5
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 2.0e-68 263.5 278 48.2
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 2.6e-68 263.1 279 48.4
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 4.5e-68 262.3 281 48.0
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 5.8e-68 261.9 280 49.6
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.3e-67 260.8 285 49.1
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 2.9e-67 259.6 284 48.6
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.8e-64 250.4 305 45.2
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.1e-63 247.7 257 47.5
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.9e-63 246.9 256 48.0
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 1.9e-58 230.3 230 47.0
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 7.2e-50 201.8 236 41.1
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 5.1e-48 195.7 240 43.8
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 3.3e-47 193.0 172 49.4
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.3e-46 191.0 199 48.2
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 2.0e-44 183.7 270 38.1
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.0e-39 167.2 231 39.8
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 5.3e-37 159.1 194 43.3
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 7.0e-37 158.7 278 37.1
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 4.5e-36 156.0 194 43.3
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 7.7e-36 155.2 194 42.3
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 3.8e-35 152.9 200 45.0
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 5.0e-35 152.5 203 44.3
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 8.5e-35 151.8 184 44.0
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 2.5e-34 150.2 243 37.4
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 5.5e-34 149.1 181 43.6
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 2.1e-33 147.1 203 44.3
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 6.1e-33 145.6 242 36.4
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.0e-31 140.6 279 34.8
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.3e-30 137.9 147 44.9
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.4e-29 134.4 94 67.0
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 2.0e-28 130.6 146 44.5
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 2.7e-28 130.2 153 44.4
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 4.2e-26 122.9 146 45.2
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 2.6e-23 113.6 182 34.6
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 6.3e-22 109.0 151 41.1
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-21 107.8 203 37.9
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-21 107.8 203 37.9
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.6e-17 94.4 145 42.8
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 2.6e-15 87.0 73 56.2
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 3.4e-15 86.7 95 45.3
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 3.7e-14 83.2 62 61.3
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 3.7e-14 83.2 62 61.3
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.2e-09 68.2 98 39.8


User provided reference genes

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