Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 9.2e-92 340.5 210 100.0
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 6.0e-59 231.5 215 67.9
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 7.8e-59 231.1 216 67.1
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 7.8e-59 231.1 220 70.0
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 4.3e-57 225.3 212 66.5
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 1.2e-54 217.2 208 60.6
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 1.2e-54 217.2 220 70.5
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 1.0e-50 204.1 212 54.7
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 9.0e-47 191.0 208 53.4
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 2.6e-46 189.5 202 63.4
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 1.3e-45 187.2 208 59.1
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 1.9e-44 183.3 206 53.4
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.2e-43 180.6 213 55.9
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 3.5e-43 179.1 213 68.1
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.8e-42 176.8 204 52.9
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.5e-41 173.7 209 53.6
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 2.1e-40 169.9 213 50.2
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.8e-40 169.5 208 50.5
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 4.8e-40 168.7 210 49.5
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 4.8e-40 168.7 211 49.3
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 2.4e-39 166.4 214 60.7
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 1.2e-38 164.1 215 51.6
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.0e-37 161.0 208 47.1
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 8.4e-37 157.9 211 46.9
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 2.5e-36 156.4 202 49.0
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 7.4e-33 144.8 209 44.0
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.3e-32 144.1 187 52.9
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.1e-31 141.0 190 45.3
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.3e-31 138.7 177 45.8
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 3.4e-30 136.0 177 45.2
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 8.4e-29 131.3 213 41.3
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.4e-28 130.6 174 47.7
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.2e-28 129.4 187 49.2
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 3.2e-28 129.4 187 49.2
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 1.2e-27 127.5 211 42.7
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.6e-27 125.6 197 51.8
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 1.0e-26 124.4 207 43.5
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 1.3e-26 124.0 166 47.6
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 3.0e-26 122.9 168 42.9
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 3.0e-26 122.9 190 43.7
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.1e-25 120.9 147 44.2
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 3.3e-25 119.4 172 41.9
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 4.3e-25 119.0 188 42.6
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.3e-25 119.0 197 50.8
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 5.7e-25 118.6 171 43.9
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 5.7e-25 118.6 180 41.1
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 5.7e-25 118.6 171 42.7
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 7.4e-25 118.2 134 47.0
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 7.4e-25 118.2 190 40.5
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 9.7e-25 117.9 170 42.9
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.6e-24 117.1 197 50.3
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 6.3e-24 115.2 210 39.0
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 1.1e-23 114.4 216 38.4
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 1.8e-23 113.6 198 41.4
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 2.4e-23 113.2 215 39.5
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 3.1e-23 112.8 220 39.5
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 3.1e-23 112.8 208 38.9
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 4.1e-23 112.5 225 38.7
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 5.3e-23 112.1 216 38.0
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 5.3e-23 112.1 211 40.8
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 6.9e-23 111.7 233 38.6
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 1.2e-22 110.9 193 38.3
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 3.4e-22 109.4 212 38.2
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 4.5e-22 109.0 218 38.5
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 4.5e-22 109.0 214 37.9
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 4.5e-22 109.0 218 38.5
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 4.5e-22 109.0 218 38.5
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 4.5e-22 109.0 214 37.9
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 4.5e-22 109.0 171 43.9
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 5.9e-22 108.6 207 38.2
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 7.7e-22 108.2 233 39.1
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 7.7e-22 108.2 193 37.8
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 1.0e-21 107.8 211 39.3
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.0e-21 107.8 211 39.3
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.0e-21 107.8 184 38.0
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.3e-21 107.5 165 42.4
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.7e-21 107.1 158 39.9
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 1.7e-21 107.1 162 44.4
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 2.2e-21 106.7 211 38.9
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 3.8e-21 105.9 176 42.0
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 3.8e-21 105.9 184 40.8
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.8e-21 105.9 191 38.7
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 5.0e-21 105.5 181 42.5
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 6.5e-21 105.1 169 44.4
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 6.5e-21 105.1 185 56.2
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 8.5e-21 104.8 211 38.4
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 1.1e-20 104.4 202 38.1
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 1.1e-20 104.4 187 38.5
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 1.9e-20 103.6 217 37.3
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 1.9e-20 103.6 199 35.7
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.5e-20 103.2 219 35.6
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 4.2e-20 102.4 219 37.0
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 4.2e-20 102.4 219 39.3
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 7.2e-20 101.7 185 39.5
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 7.2e-20 101.7 170 47.1
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 9.4e-20 101.3 172 43.6
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.6e-19 100.5 184 39.1
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 1.6e-19 100.5 173 41.0
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 2.1e-19 100.1 221 36.7
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 3.6e-19 99.4 213 35.7
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 4.6e-19 99.0 188 39.4
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 6.1e-19 98.6 193 39.9
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 7.9e-19 98.2 163 39.9
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 7.9e-19 98.2 216 42.6
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 1.0e-18 97.8 173 38.2
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.4e-18 97.4 173 38.2
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.8e-18 97.1 169 37.9
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 3.0e-18 96.3 140 40.0
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 3.9e-18 95.9 224 38.4
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 6.7e-18 95.1 215 36.7
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 6.7e-18 95.1 176 36.9
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.5e-17 94.0 171 42.1
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 4.3e-17 92.4 178 36.0
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 2.8e-16 89.7 187 39.6
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 2.8e-16 89.7 136 41.9
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.1e-15 87.8 184 36.4
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 5.3e-15 85.5 204 37.3
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 1.5e-14 84.0 176 37.5
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 2.0e-14 83.6 204 36.8
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 2.0e-14 83.6 186 35.5
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 5.9e-14 82.0 191 35.6
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 5.9e-14 82.0 158 39.9
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 1.0e-13 81.3 175 38.3
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 1.7e-13 80.5 167 37.7
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 2.2e-13 80.1 169 40.8
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 2.9e-13 79.7 166 35.5
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 6.5e-13 78.6 157 38.9
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 2.5e-12 76.6 170 42.9
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 3.2e-12 76.3 176 37.5
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 9.4e-12 74.7 211 38.9
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 6.1e-11 72.0 178 33.1
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 2.3e-10 70.1 186 32.3
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 3.0e-10 69.7 172 35.5
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 3.9e-10 69.3 124 37.9
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 8.8e-10 68.2 151 32.5
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 1.7e-08 63.9 132 39.4
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 4.8e-08 62.4 157 31.8
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 8.2e-08 61.6 135 33.3
TAR381G1423 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.1e-07 61.2 53 56.6
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 7.7e-06 55.1 143 33.6


User provided reference genes

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