Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 1.2e-121 439.9 232 100.0
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 2.8e-102 375.6 232 87.1
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 2.3e-99 365.9 232 85.3
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 1.9e-98 362.8 232 84.5
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 2.5e-98 362.5 232 85.8
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 4.2e-98 361.7 232 83.6
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 2.0e-95 352.8 232 82.3
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 8.3e-94 347.4 240 80.8
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 1.2e-92 343.6 240 80.0
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 2.3e-88 329.3 287 66.6
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 1.7e-78 296.6 227 68.7
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.4e-77 293.5 227 70.0
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 5.4e-77 291.6 227 70.0
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 2.3e-75 286.2 227 69.2
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 2.3e-75 286.2 227 67.4
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 3.0e-75 285.8 228 65.8
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 5.0e-75 285.0 227 69.6
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.1e-74 283.9 227 67.4
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.5e-74 283.5 228 69.3
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 2.5e-74 282.7 249 65.5
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 4.3e-74 282.0 227 68.3
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 4.3e-74 282.0 227 67.0
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 7.3e-74 281.2 216 69.9
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 9.5e-74 280.8 224 69.2
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 1.2e-73 280.4 227 66.5
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 2.1e-73 279.6 229 67.7
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 2.8e-73 279.3 248 63.3
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 3.6e-73 278.9 231 68.4
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 4.7e-73 278.5 231 66.2
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 6.2e-73 278.1 227 66.5
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 1.4e-72 276.9 222 70.7
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.3e-72 276.2 229 66.8
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.3e-72 276.2 251 62.9
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 3.1e-72 275.8 181 82.3
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 3.1e-72 275.8 232 65.9
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 4.0e-72 275.4 229 66.8
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.0e-72 275.4 229 66.8
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 8.9e-72 274.2 230 66.5
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 1.5e-71 273.5 247 63.6
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.5e-71 273.5 230 68.3
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.0e-71 273.1 229 65.9
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 2.6e-71 272.7 229 69.0
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.6e-71 272.7 229 65.9
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.6e-71 272.7 248 63.3
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 2.6e-71 272.7 217 69.1
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 3.4e-71 272.3 248 62.9
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 7.5e-71 271.2 227 65.2
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 9.9e-71 270.8 230 67.4
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 1.3e-70 270.4 245 61.6
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 1.3e-70 270.4 248 62.1
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 1.7e-70 270.0 231 66.7
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 4.9e-70 268.5 227 62.6
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 8.3e-70 267.7 230 64.3
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.9e-69 266.5 222 67.1
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 3.2e-69 265.8 228 66.2
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 4.1e-69 265.4 240 64.6
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 7.1e-69 264.6 233 64.8
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 3.5e-68 262.3 227 60.4
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 1.0e-67 260.8 232 62.5
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.3e-67 260.4 227 65.2
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 1.7e-67 260.0 222 66.7
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 2.3e-67 259.6 222 66.7
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 3.9e-67 258.8 231 64.5
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 3.9e-67 258.8 231 64.5
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 5.1e-67 258.5 232 62.9
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 1.9e-66 256.5 216 65.3
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 1.9e-66 256.5 248 59.3
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 3.3e-66 255.8 245 61.6
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 3.3e-66 255.8 230 60.0
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 9.5e-66 254.2 231 61.5
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.2e-65 253.8 231 60.6
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 1.6e-65 253.4 246 59.8
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 1.6e-65 253.4 197 72.6
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 4.7e-65 251.9 248 58.1
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 6.2e-65 251.5 239 61.1
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 8.1e-65 251.1 239 61.1
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 2.4e-64 249.6 235 61.3
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 6.8e-64 248.1 263 55.9
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 6.8e-64 248.1 213 63.8
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.5e-63 246.9 201 65.7
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 2.0e-63 246.5 209 65.1
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 3.4e-63 245.7 197 69.5
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 9.9e-63 244.2 259 56.4
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 1.3e-62 243.8 255 56.9
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 1.3e-62 243.8 221 62.9
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 8.4e-62 241.1 202 65.3
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.1e-61 240.7 194 69.6
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 1.4e-61 240.4 227 60.4
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 1.9e-61 240.0 232 60.3
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 7.8e-60 234.6 194 67.5
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 3.0e-59 232.6 207 62.8
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 5.1e-59 231.9 231 58.9
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 2.2e-54 216.5 198 61.1
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 1.7e-51 206.8 193 62.2
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 5.1e-51 205.3 148 71.6
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.3e-43 180.6 227 45.8
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 2.5e-42 176.4 232 47.8
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 3.7e-41 172.6 244 45.1
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 1.1e-40 171.0 164 58.5
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 2.4e-40 169.9 190 55.3
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 4.5e-39 165.6 208 46.6
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 3.2e-37 159.5 154 57.1
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 2.7e-36 156.4 218 46.3
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.3e-35 154.1 216 46.3
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 5.1e-35 152.1 152 53.9
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 8.2e-33 144.8 112 67.0
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 1.8e-32 143.7 179 48.6
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 3.2e-29 132.9 156 46.2
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.0e-27 126.3 90 71.1
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 4.2e-21 105.9 116 46.6
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 9.4e-21 104.8 158 43.0
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 1.8e-19 100.5 111 54.1
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 6.7e-19 98.6 100 57.0
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 8.8e-19 98.2 169 40.8
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 3.6e-12 76.3 152 34.2
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 7.9e-12 75.1 40 87.5
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 7.7e-07 58.5 47 61.7
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 7.7e-07 58.5 47 61.7
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 7.7e-07 58.5 47 61.7
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.7e-06 57.4 47 57.4
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.9e-06 56.6 47 59.6


User provided reference genes

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