Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 1.2e-219 766.1 365 100.0
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 9.4e-185 650.2 365 84.7
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 8.0e-184 647.1 366 84.2
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 1.8e-183 646.0 362 84.8
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 1.8e-183 646.0 363 83.5
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 2.6e-182 642.1 363 82.6
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 7.4e-182 640.6 363 83.2
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 2.4e-180 635.6 363 82.6
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 6.5e-178 627.5 370 81.1
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 2.7e-171 605.5 365 77.5
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 7.7e-163 577.4 369 73.2
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 5.0e-162 574.7 369 72.9
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 6.6e-162 574.3 366 72.4
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.9e-161 572.8 369 72.6
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.2e-160 570.1 368 71.2
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 2.1e-160 569.3 365 71.5
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 1.4e-159 566.6 353 73.4
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.9e-159 563.9 360 71.9
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 3.4e-158 562.0 366 70.5
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 3.4e-158 562.0 366 70.2
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.3e-157 560.1 354 71.5
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.7e-157 559.7 360 71.7
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.7e-157 559.7 360 71.7
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 2.2e-157 559.3 353 73.1
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 6.3e-157 557.8 361 68.7
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 1.1e-156 557.0 365 69.6
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.4e-156 556.6 367 71.4
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 3.2e-156 555.4 367 70.6
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 3.2e-156 555.4 362 70.7
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 3.2e-156 555.4 367 68.9
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 9.2e-156 553.9 367 70.3
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 3.5e-155 552.0 362 69.3
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.0e-154 550.4 360 70.6
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 3.3e-153 545.4 368 68.8
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 3.3e-153 545.4 355 71.3
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.6e-152 543.1 356 69.1
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 4.7e-152 541.6 347 69.7
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 6.1e-152 541.2 363 69.7
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 1.0e-151 540.4 348 69.0
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 8.9e-151 537.3 355 68.7
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 2.0e-150 536.2 355 69.6
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 9.8e-150 533.9 350 69.1
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.3e-149 533.5 355 68.7
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.3e-149 533.5 357 69.5
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 1.7e-149 533.1 352 71.3
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 8.3e-149 530.8 364 66.2
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 2.4e-148 529.3 366 67.5
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 5.4e-148 528.1 362 65.5
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 9.2e-148 527.3 364 65.9
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.2e-147 526.9 357 66.7
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 2.7e-147 525.8 370 65.7
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.0e-146 523.9 364 65.9
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.0e-146 523.9 353 68.0
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.3e-146 522.7 349 68.2
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 6.6e-146 521.2 362 66.0
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 8.6e-146 520.8 355 67.9
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.9e-145 519.6 353 67.4
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.9e-145 519.6 353 67.4
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 1.9e-145 519.6 311 75.6
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 1.9e-145 519.6 365 64.9
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 1.2e-144 516.9 366 65.8
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-144 516.9 325 70.8
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 2.1e-144 516.2 325 70.8
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 2.8e-144 515.8 325 70.8
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 2.8e-144 515.8 360 65.0
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 8.0e-144 514.2 324 70.4
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.8e-143 513.1 353 66.9
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.3e-143 512.7 364 65.7
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 3.1e-143 512.3 345 65.2
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 6.8e-143 511.1 346 65.0
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 1.2e-142 510.4 360 66.9
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 3.4e-142 508.8 346 64.5
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 3.4e-142 508.8 313 70.9
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 4.4e-142 508.4 358 64.2
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 5.8e-142 508.1 365 62.5
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 7.5e-142 507.7 358 62.6
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 9.8e-142 507.3 369 64.8
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 2.9e-141 505.8 365 62.5
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 6.4e-141 504.6 362 66.0
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 2.4e-140 502.7 358 63.4
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 4.1e-140 501.9 358 62.8
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 5.4e-140 501.5 363 65.0
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 9.2e-140 500.7 363 64.7
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.6e-139 500.0 349 65.0
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 2.7e-139 499.2 346 62.7
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 4.6e-139 498.4 360 64.7
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 3.9e-138 495.4 363 63.9
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 3.9e-138 495.4 362 62.7
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 6.6e-138 494.6 364 64.3
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 8.6e-138 494.2 350 63.7
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.5e-137 493.4 358 62.0
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 7.3e-137 491.1 373 61.1
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.2e-136 488.0 356 64.9
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 8.1e-136 487.6 452 52.9
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 2.3e-135 486.1 356 64.6
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 6.8e-135 484.6 400 58.5
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 3.4e-134 482.3 448 53.3
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 6.4e-133 478.0 350 62.0
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 6.0e-131 471.5 347 61.7
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.1e-129 467.2 359 63.0
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.3e-129 465.3 348 60.1
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 2.8e-128 462.6 357 59.1
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 1.1e-127 460.7 267 79.4
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.1e-127 460.7 370 60.8
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.4e-127 460.3 367 56.7
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 5.2e-127 458.4 340 60.9
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.5e-126 456.8 365 61.6
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 4.9e-125 451.8 365 57.3
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 1.0e-122 444.1 281 70.8
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.3e-122 443.7 281 70.8
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 6.6e-122 441.4 318 64.8
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 8.7e-122 441.0 281 70.5
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 2.1e-115 419.9 260 71.5
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 2.7e-115 419.5 366 54.4
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 4.9e-109 398.7 340 55.0
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.2e-102 377.5 269 61.7
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.9e-101 372.1 224 74.1
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.2e-100 369.4 244 68.9
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 7.1e-100 368.2 195 90.3
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 2.3e-98 363.2 206 81.1
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 4.3e-97 359.0 292 54.5
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 4.8e-96 355.5 329 55.0
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 7.6e-94 348.2 237 67.1
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 1.9e-92 343.6 365 47.7
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.1e-89 334.3 200 73.0
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.1e-84 317.8 259 56.0
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.4e-84 317.4 366 44.8
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 7.2e-84 315.1 345 49.6
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 5.7e-81 305.4 357 45.1
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.3e-80 304.3 367 43.9
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 6.9e-79 298.5 237 58.6
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 7.7e-78 295.0 320 44.4
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 4.7e-75 285.8 199 64.3
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.4e-73 279.3 183 69.4
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 9.7e-73 278.1 196 64.8
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 2.8e-72 276.6 160 81.9
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 8.2e-64 248.4 158 74.1
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 2.1e-59 233.8 245 50.2
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 1.3e-45 188.0 148 59.5
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.7e-37 161.0 224 40.2
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 3.9e-37 159.8 104 72.1
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.7e-32 144.4 103 67.0
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 4.6e-30 136.3 102 62.7
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 7.1e-23 112.5 102 51.0
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 6.0e-22 109.4 104 47.1
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 4.7e-11 73.2 123 30.9
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 7.8e-06 55.8 46 58.7


User provided reference genes

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