Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1691.4 852 100.0
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1516.9 862 88.4
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1504.6 861 88.5
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1479.5 858 87.6
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1478.8 858 86.7
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1477.6 864 87.7
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1476.1 861 87.3
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1476.1 858 86.9
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1473.8 858 87.2
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1470.3 846 88.4
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1468.4 830 88.9
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1466.1 860 86.7
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1458.7 840 87.6
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1452.6 855 86.3
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1451.8 859 85.7
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1450.6 857 85.9
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1439.5 881 80.0
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1421.8 858 83.6
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1411.4 863 83.1
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1409.4 853 83.5
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1407.9 862 82.5
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1407.5 853 82.8
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1406.0 849 83.0
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1404.8 864 82.1
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1404.4 864 82.4
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1403.7 857 83.3
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1402.5 849 82.6
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1402.5 848 82.9
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1399.8 866 82.3
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1399.8 864 82.5
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1397.9 848 82.5
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1397.9 848 82.5
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1397.5 861 83.7
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1395.2 864 82.3
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1393.6 865 81.5
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1392.9 856 82.0
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1392.9 866 82.1
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1392.5 864 82.2
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1390.9 840 82.6
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1389.4 832 83.4
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1387.9 865 81.6
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1385.5 864 81.7
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1384.8 853 82.1
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1382.9 805 85.8
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1382.9 852 82.3
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1382.1 776 90.3
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1380.5 844 81.9
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1379.0 897 78.8
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1379.0 903 78.8
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1377.1 855 82.1
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1373.6 862 81.1
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1372.1 869 81.0
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1365.1 852 80.9
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1362.8 834 81.7
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1361.7 867 80.0
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1360.5 847 80.4
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1360.1 851 80.5
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1356.3 847 80.5
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1354.3 830 82.9
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1354.0 843 80.8
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1350.1 830 81.4
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1349.3 788 86.2
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1348.2 847 80.8
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 817 82.1
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1342.8 844 79.5
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1342.4 835 81.8
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1342.4 856 78.3
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1342.0 842 80.5
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1341.6 856 79.6
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1341.3 842 80.6
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1339.3 808 83.2
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1337.0 839 80.5
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1335.9 845 80.1
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1333.2 845 80.6
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1332.8 844 80.1
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1330.5 841 79.8
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1323.1 848 78.7
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1322.0 831 81.2
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1322.0 831 81.2
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1322.0 831 81.2
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1320.8 835 81.1
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1320.1 858 79.3
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1318.9 836 78.8
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1317.4 840 79.6
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1315.8 827 79.8
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 841 79.8
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 717 91.2
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1313.5 828 79.7
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1313.1 834 78.7
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1312.7 844 78.8
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 850 79.3
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 850 79.3
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 850 79.3
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 850 79.3
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 837 79.5
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 843 79.7
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 827 80.0
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1305.0 828 79.8
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1304.3 836 80.7
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1302.0 827 79.8
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 832 79.9
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 837 80.4
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1297.7 818 80.4
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 837 80.3
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1295.8 839 77.6
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1295.8 832 80.5
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1293.5 830 81.4
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 894 73.5
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 836 78.3
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1288.1 895 75.8
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1287.3 782 84.0
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1282.3 815 79.9
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1280.4 791 80.5
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 773 81.8
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1275.4 825 78.1
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1272.7 844 75.5
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 823 79.5
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1271.1 805 79.0
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 837 77.8
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1267.7 837 76.0
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1266.9 815 78.5
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1266.5 862 75.9
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1265.4 835 78.3
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1264.6 856 76.1
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 819 77.9
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1250.7 813 78.0
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1241.9 828 77.3
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1241.5 804 76.9
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1238.8 840 71.5
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1235.3 880 73.8
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1233.0 790 77.8
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1218.8 841 75.9
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1211.1 839 75.2
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1204.9 821 73.9
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1197.2 756 79.4
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1185.6 905 69.1
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1178.7 817 72.9
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1171.4 817 72.8
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1142.9 812 72.2
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1142.1 737 79.9
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1140.6 825 70.7
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 4.0e-303 1044.6 834 67.9
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 4.9e-285 984.6 582 80.9
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 4.2e-276 954.9 634 71.3
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 2.9e-269 932.2 552 85.3
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.9e-269 931.4 845 62.1
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 9.0e-263 910.6 589 75.2
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 1.1e-260 903.7 524 83.6
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.5e-182 642.9 728 52.7
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 2.8e-147 526.9 438 59.6
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.4e-143 514.6 359 79.4
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.3e-141 508.1 330 76.4
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 5.5e-111 406.4 317 72.9
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 4.2e-103 380.2 283 66.8
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.6e-102 378.3 397 54.7
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.4e-90 337.8 581 45.8
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 6.0e-73 280.0 153 87.6
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.1e-58 232.6 156 75.6
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 4.0e-45 187.6 163 58.9
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 3.8e-35 154.5 503 28.4
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.3e-31 141.4 461 27.8
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.7e-30 137.9 76 84.2
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 4.8e-30 137.5 74 86.5
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 4.0e-29 134.4 471 26.5
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 8.4e-27 126.7 68 88.2
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.2e-26 124.8 490 27.8
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.1e-25 122.1 96 66.7
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 5.1e-24 117.5 429 28.4
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 8.7e-24 116.7 119 52.9
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 9.7e-15 86.7 88 51.1
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-14 86.3 266 26.7
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-14 86.3 220 30.9
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 5.3e-13 80.9 149 35.6
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-07 62.8 102 39.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 3.3e-07 61.6 38 76.3


User provided reference genes

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