Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P827T25 Lonicera japonica HOM05D000432 ORTHO05D000320 1.5e-25 118.6 57 100.0
Lj1P1215T26 Lonicera japonica HOM05D000432 ORTHO05D000320 1.9e-12 75.1 46 82.6
Hma1.2p1_0827F.1_g225010 Hydrangea macrophylla HOM05D000432 ORTHO05D000320 2.0e-09 65.1 47 61.7
Dinv40463 Davidia involucrata HOM05D000432 ORTHO05D000320 2.6e-09 64.7 49 61.2
AT5G45470 Arabidopsis thaliana HOM05D000432 ORTHO05D000320 1.0e-08 62.8 45 64.4
Hma1.2p1_0827F.1_g224980 Hydrangea macrophylla HOM05D000432 ORTHO05D000320 1.0e-08 62.8 47 61.7
AUR62028123 Chenopodium quinoa HOM05D000432 ORTHO05D000320 1.3e-08 62.4 52 61.5
MELO3C005507.2 Cucumis melo HOM05D000432 ORTHO05D000320 1.3e-08 62.4 46 60.9
Duzib205G1993 Durio zibethinus HOM05D000432 ORTHO05D000320 2.2e-08 61.6 46 63.0
Gohir.A12G203800 Gossypium hirsutum HOM05D000432 ORTHO05D000320 2.2e-08 61.6 43 67.4
Gohir.D12G206200 Gossypium hirsutum HOM05D000432 ORTHO05D000320 2.2e-08 61.6 43 67.4
Gorai.008G221400 Gossypium raimondii HOM05D000432 ORTHO05D000320 2.2e-08 61.6 43 67.4
CsaV3_5G004540 Cucumis sativus L. HOM05D000432 ORTHO05D000320 3.8e-08 60.8 46 60.9
Sed0004347 Sechium edule HOM05D000432 ORTHO05D000320 3.8e-08 60.8 43 58.1
BcaC03g13739 Brassica carinata HOM05D000432 ORTHO05D000320 5.0e-08 60.5 44 63.6
BcaC03g16755 Brassica carinata HOM05D000432 ORTHO05D000320 5.0e-08 60.5 44 63.6
BcaC03g16760 Brassica carinata HOM05D000432 ORTHO05D000320 5.0e-08 60.5 44 63.6
A02p29230 Brassica napus HOM05D000432 ORTHO05D000320 5.0e-08 60.5 44 63.6
C02p46360 Brassica napus HOM05D000432 ORTHO05D000320 5.0e-08 60.5 44 63.6
BolC2t07021H Brassica oleracea HOM05D000432 ORTHO05D000320 5.0e-08 60.5 44 63.6
BraA02t07952Z Brassica rapa HOM05D000432 ORTHO05D000320 5.0e-08 60.5 44 63.6
Carub.0008s0255 Capsella rubella HOM05D000432 ORTHO05D000320 5.0e-08 60.5 44 63.6
CiPaw.16G038400 Carya illinoinensis HOM05D000432 ORTHO05D000320 5.0e-08 60.5 44 61.4
DCAR_004158 Daucus carota HOM05D000432 ORTHO05D000320 5.0e-08 60.5 43 62.8
AL8G13270 Arabidopsis lyrata HOM05D000432 ORTHO05D000320 6.5e-08 60.1 44 63.6
Cpa.g.sc74.92 Carica papaya HOM05D000432 ORTHO05D000320 6.5e-08 60.1 46 60.9
Cc00_g32420 Coffea canephora HOM05D000432 ORTHO05D000320 6.5e-08 60.1 47 57.4
BcaB07g30444 Brassica carinata HOM05D000432 ORTHO05D000320 8.5e-08 59.7 44 61.4
Carub.0008s0258 Capsella rubella HOM05D000432 ORTHO05D000320 8.5e-08 59.7 48 58.3
DCAR_008090 Daucus carota HOM05D000432 ORTHO05D000320 8.5e-08 59.7 43 60.5
ECA248G1936 Erigeron canadensis HOM05D000432 ORTHO05D000320 8.5e-08 59.7 46 60.9
GSVIVG01014449001 Vitis vinifera HOM05D000432 ORTHO05D000320 8.5e-08 59.7 46 65.2
Aa31LG9G7540 Aethionema arabicum HOM05D000432 ORTHO05D000320 1.1e-07 59.3 43 65.1
ClCG01G004350 Citrullus lanatus HOM05D000432 ORTHO05D000320 1.1e-07 59.3 46 58.7
DCAR_005205 Daucus carota HOM05D000432 ORTHO05D000320 1.1e-07 59.3 47 55.3
Manes.10G109200 Manihot esculenta HOM05D000432 ORTHO05D000320 1.1e-07 59.3 53 52.8
PGR004G0899 Punica granatum HOM05D000432 ORTHO05D000320 1.1e-07 59.3 51 56.9
Atru.chr6.1498 Acer truncatum HOM05D000432 ORTHO05D000320 1.4e-07 58.9 46 56.5
AL8G15800 Arabidopsis lyrata HOM05D000432 ORTHO05D019725 1.4e-07 58.9 55 56.4
DCAR_005208 Daucus carota HOM05D000432 ORTHO05D000320 1.4e-07 58.9 47 53.2
DCAR_009440 Daucus carota HOM05D000432 ORTHO05D000320 1.4e-07 58.9 47 53.2
CSS0026724 Camellia sinensis var. sinensis HOM05D000432 ORTHO05D000320 1.9e-07 58.5 47 57.4
CSS0033145 Camellia sinensis var. sinensis HOM05D000432 ORTHO05D000320 1.9e-07 58.5 47 57.4
CANSAT21G0175 Cannabis sativa HOM05D000432 ORTHO05D000320 1.9e-07 58.5 49 59.2
ECA248G2828 Erigeron canadensis HOM05D000432 ORTHO05D000320 1.9e-07 58.5 46 63.0
Nn7g37691 Nelumbo nucifera HOM05D000432 ORTHO05D000320 1.9e-07 58.5 51 56.9
Potri.001G146800 Populus trichocarpa HOM05D000432 ORTHO05D000320 1.9e-07 58.5 46 58.7
QL03p006352 Quercus lobata HOM05D000432 ORTHO05D000320 1.9e-07 58.5 52 55.8
QL12p011078 Quercus lobata HOM05D000432 ORTHO05D000002 1.9e-07 58.5 45 57.8
GSVIVG01014447001 Vitis vinifera HOM05D000432 ORTHO05D000320 1.9e-07 58.5 46 65.2
MSTRG.15942 Avicennia marina HOM05D000432 ORTHO05D000320 2.5e-07 58.2 56 46.4
Duzib212G0610 Durio zibethinus HOM05D000432 ORTHO05D000320 2.5e-07 58.2 46 56.5
Eucgr.F00719 Eucalyptus grandis HOM05D000432 ORTHO05D000320 2.5e-07 58.2 49 53.1
Ciclev10025090m.g Citrus clementina HOM05D000432 ORTHO05D000320 3.2e-07 57.8 47 59.6
DCAR_006531 Daucus carota HOM05D000432 ORTHO05D000320 3.2e-07 57.8 44 59.1
Thhalv10001216m.g Eutrema salsugineum HOM05D000432 ORTHO05D000320 3.2e-07 57.8 42 66.7
Manes.10G137511 Manihot esculenta HOM05D000432 ORTHO05D000320 3.2e-07 57.8 53 50.9
Manes.10G138300 Manihot esculenta HOM05D000432 ORTHO05D000320 3.2e-07 57.8 53 50.9
THA.LOC104810911 Tarenaya hassleriana HOM05D000432 ORTHO05D000320 3.2e-07 57.8 45 62.2
vmacro03770 Vaccinium macrocarpon HOM05D000432 ORTHO05D000320 3.2e-07 57.8 56 46.4
GSVIVG01014456001 Vitis vinifera HOM05D000432 ORTHO05D000320 3.2e-07 57.8 52 51.9
GSVIVG01015712001 Vitis vinifera HOM05D000432 ORTHO05D000320 3.2e-07 57.8 52 53.8
CANSAT78G2303 Cannabis sativa HOM05D000432 ORTHO05D000320 4.2e-07 57.4 51 52.9
Ciclev10027546m.g Citrus clementina HOM05D000432 ORTHO05D000320 4.2e-07 57.4 44 63.6
Cc00_g11810 Coffea canephora HOM05D000432 ORTHO05D000320 4.2e-07 57.4 42 64.3
Cc03_g14720 Coffea canephora HOM05D000432 ORTHO05D000320 4.2e-07 57.4 47 53.2
PGR004G0999 Punica granatum HOM05D000432 ORTHO05D000320 4.2e-07 57.4 51 54.9
QL03p005364 Quercus lobata HOM05D000432 ORTHO05D000320 4.2e-07 57.4 42 66.7
QL12p010963 Quercus lobata HOM05D000432 ORTHO05D000320 4.2e-07 57.4 42 64.3
Sabra03G0057100 Salix brachista HOM05D000432 ORTHO05D000320 4.2e-07 57.4 47 59.6
CARHR176560 Cardamine hirsuta HOM05D000432 ORTHO05D000320 5.5e-07 57.0 43 60.5
Ciclev10030709m.g Citrus clementina HOM05D000432 ORTHO05D000320 5.5e-07 57.0 47 55.3
Cc03_g14550 Coffea canephora HOM05D000432 ORTHO05D000320 5.5e-07 57.0 47 55.3
Haze_06615 Corylus avellana HOM05D000432 ORTHO05D000320 5.5e-07 57.0 44 61.4
DCAR_005204 Daucus carota HOM05D000432 ORTHO05D000320 5.5e-07 57.0 47 53.2
QL03p006387 Quercus lobata HOM05D000432 ORTHO05D000320 5.5e-07 57.0 47 61.7
VMungo0540G0385 Vigna mungo HOM05D000432 ORTHO05D000320 5.5e-07 57.0 52 50.0
AL8G13150 Arabidopsis lyrata HOM05D000432 ORTHO05D000320 7.2e-07 56.6 46 63.0
CARHR176490 Cardamine hirsuta HOM05D000432 ORTHO05D000320 7.2e-07 56.6 42 61.9
Ciclev10024981m.g Citrus clementina HOM05D000432 ORTHO05D000320 7.2e-07 56.6 56 55.4
Lsat_1_v5_gn_1_124601 Lactuca sativa HOM05D000432 ORTHO05D000320 7.2e-07 56.6 44 59.1
Rhsim13G0166900 Rhododendron simsii HOM05D000432 ORTHO05D000320 7.2e-07 56.6 56 46.4
THA.LOC104806187 Tarenaya hassleriana HOM05D000432 ORTHO05D000320 7.2e-07 56.6 43 58.1
AT5G45530 Arabidopsis thaliana HOM05D000432 ORTHO05D000320 9.4e-07 56.2 46 63.0
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 9.4e-07 56.2 52 50.0
Gohir.A12G205200 Gossypium hirsutum HOM05D000432 ORTHO05D000320 9.4e-07 56.2 46 58.7
Gohir.D12G207600 Gossypium hirsutum HOM05D000432 ORTHO05D000320 9.4e-07 56.2 46 58.7
Gorai.008G223000 Gossypium raimondii HOM05D000432 ORTHO05D000320 9.4e-07 56.2 46 58.7
Hma1.2p1_1258F.1_g270870 Hydrangea macrophylla HOM05D000432 ORTHO05D000320 9.4e-07 56.2 44 59.1
Lj6g0014847 Lotus japonicus HOM05D000432 ORTHO05D000320 9.4e-07 56.2 51 49.0
Rhsim13G0166800 Rhododendron simsii HOM05D000432 ORTHO05D000320 9.4e-07 56.2 56 46.4
THA.LOC104806186 Tarenaya hassleriana HOM05D000432 ORTHO05D000320 9.4e-07 56.2 44 61.4
Aa31LG9G7490 Aethionema arabicum HOM05D000432 ORTHO05D000320 1.2e-06 55.8 42 64.3
Cfa000357 Carpinus fangiana HOM05D000432 ORTHO05D000320 1.2e-06 55.8 52 51.9
DCAR_005209 Daucus carota HOM05D000432 ORTHO05D000320 1.2e-06 55.8 52 48.1
Glyma.08G314900 Glycine max HOM05D000432 ORTHO05D000320 1.2e-06 55.8 51 51.0
Lsat_1_v5_gn_0_25841 Lactuca sativa HOM05D000432 ORTHO05D000320 1.2e-06 55.8 50 52.0
PGR004G0032 Punica granatum HOM05D000432 ORTHO05D000320 1.2e-06 55.8 48 56.2
PGR004G2416 Punica granatum HOM05D000432 ORTHO05D000320 1.2e-06 55.8 49 51.0
QL03p006234 Quercus lobata HOM05D000432 ORTHO05D000320 1.2e-06 55.8 47 59.6
QL05p080571 Quercus lobata HOM05D000432 ORTHO05D000320 1.2e-06 55.8 51 52.9
SGA_v2.0_scaffold114G31990 Striga asiatica HOM05D000432 ORTHO05D000320 1.2e-06 55.8 52 50.0
Thecc.03G312400 Theobroma cacao HOM05D000432 ORTHO05D000320 1.2e-06 55.8 47 53.2
Thecc.03G316100 Theobroma cacao HOM05D000432 ORTHO05D000320 1.2e-06 55.8 46 54.3
Aqoxy1G02155 Aquilegia oxysepala HOM05D000432 ORTHO05D000320 1.6e-06 55.5 52 50.0
CARHR176580 Cardamine hirsuta HOM05D000432 ORTHO05D000320 1.6e-06 55.5 53 49.1
Ciclev10027077m.g Citrus clementina HOM05D000432 ORTHO05D000320 1.6e-06 55.5 44 61.4
Ciclev10027586m.g Citrus clementina HOM05D000432 ORTHO05D000320 1.6e-06 55.5 48 58.3
QL03p006324 Quercus lobata HOM05D000432 ORTHO05D000320 1.6e-06 55.5 47 59.6
QL12p010805 Quercus lobata HOM05D000432 ORTHO05D000320 1.6e-06 55.5 42 59.5
SalBow8G0110 Salvia bowleyana HOM05D000432 ORTHO05D000320 1.6e-06 55.5 46 54.3
TWI32G0995 Tripterygium wilfordii HOM05D000432 ORTHO05D000320 1.6e-06 55.5 44 56.8
vmacro03767 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 1.6e-06 55.5 50 50.0
Cfa000323 Carpinus fangiana HOM05D000432 ORTHO05D000320 2.1e-06 55.1 47 55.3
Cc11_g07600 Coffea canephora HOM05D000432 ORTHO05D000320 2.1e-06 55.1 43 60.5
DCAR_008091 Daucus carota HOM05D000432 ORTHO05D000320 2.1e-06 55.1 43 58.1
Rhsim03G0024100 Rhododendron simsii HOM05D000432 ORTHO05D000320 2.1e-06 55.1 52 46.2
Actinidia26973 Actinidia chinensis HOM05D000432 ORTHO05D000320 2.7e-06 54.7 57 43.9
Ah.13g075700 Amaranthus hybridus HOM05D000432 ORTHO05D000320 2.7e-06 54.7 52 50.0
BcaC06g31545 Brassica carinata HOM05D000432 ORTHO05D000320 2.7e-06 54.7 42 64.3
BcaC06g34427 Brassica carinata HOM05D000432 ORTHO05D000320 2.7e-06 54.7 42 64.3
A06p46550 Brassica napus HOM05D000432 ORTHO05D000320 2.7e-06 54.7 42 64.3
C07p28620 Brassica napus HOM05D000432 ORTHO05D000320 2.7e-06 54.7 42 64.3
BolC7t43400H Brassica oleracea HOM05D000432 ORTHO05D000320 2.7e-06 54.7 42 64.3
BraA06t27529Z Brassica rapa HOM05D000432 ORTHO05D000320 2.7e-06 54.7 42 64.3
CARHR176480 Cardamine hirsuta HOM05D000432 ORTHO05D000320 2.7e-06 54.7 43 60.5
Cfa000327 Carpinus fangiana HOM05D000432 ORTHO05D000320 2.7e-06 54.7 48 58.3
Haze_04678 Corylus avellana HOM05D000432 ORTHO05D000320 2.7e-06 54.7 47 53.2
Thhalv10000775m.g Eutrema salsugineum HOM05D000432 ORTHO05D000320 2.7e-06 54.7 43 58.1
HanXRQChr11g0338451 Helianthus annuus HOM05D000432 ORTHO05D000320 2.7e-06 54.7 53 49.1
Sp2g10430 Schrenkiella parvula HOM05D000432 ORTHO05D000320 2.7e-06 54.7 42 64.3
Aqoxy1G03920 Aquilegia oxysepala HOM05D000432 ORTHO05D000320 3.6e-06 54.3 52 46.2
CSS0005665 Camellia sinensis var. sinensis HOM05D000432 ORTHO05D000320 3.6e-06 54.3 44 54.5
ECA238G3735 Erigeron canadensis HOM05D000432 ORTHO05D000320 3.6e-06 54.3 51 51.0
Migut.B01262 Erythranthe guttata HOM05D000432 ORTHO05D000320 3.6e-06 54.3 41 63.4
Hma1.2p1_2011F.1_g311020 Hydrangea macrophylla HOM05D000432 ORTHO05D000320 3.6e-06 54.3 51 49.0
Rhsim03G0021000 Rhododendron simsii HOM05D000432 ORTHO05D000320 3.6e-06 54.3 48 47.9
Atru.chr2.2544 Acer truncatum HOM05D000432 ORTHO05D000320 4.7e-06 53.9 46 54.3
Haze_06603 Corylus avellana HOM05D000432 ORTHO05D001858 4.7e-06 53.9 43 62.8
QL03p005456 Quercus lobata HOM05D000432 ORTHO05D000320 4.7e-06 53.9 47 57.4
RcHm_v2.0_Chr2g0112841 Rosa chinensis HOM05D000432 ORTHO05D000320 4.7e-06 53.9 46 54.3
Aqoxy7G03768 Aquilegia oxysepala HOM05D000432 ORTHO05D000320 6.1e-06 53.5 47 51.1
Cfa000320 Carpinus fangiana HOM05D000432 ORTHO05D000320 6.1e-06 53.5 47 51.1
CiPaw.15G053000 Carya illinoinensis HOM05D000432 ORTHO05D000320 6.1e-06 53.5 42 57.1
CiPaw.15G053200 Carya illinoinensis HOM05D000432 ORTHO05D000320 6.1e-06 53.5 47 48.9
Eucgr.J01172 Eucalyptus grandis HOM05D000432 ORTHO05D000320 6.1e-06 53.5 48 50.0
HanXRQChr04g0097301 Helianthus annuus HOM05D000432 ORTHO05D000320 6.1e-06 53.5 43 55.8
HanXRQChr11g0338431 Helianthus annuus HOM05D000432 ORTHO05D000320 6.1e-06 53.5 44 56.8
Prupe.4G034100 Prunus persica HOM05D000432 ORTHO05D000320 6.1e-06 53.5 42 59.5
Actinidia05561 Actinidia chinensis HOM05D000432 ORTHO05D000320 7.9e-06 53.1 47 48.9
Aqoxy1G04206 Aquilegia oxysepala HOM05D000432 ORTHO05D000320 7.9e-06 53.1 52 46.2
EL10Ac1g01915 Beta vulgaris HOM05D000432 ORTHO05D000320 7.9e-06 53.1 49 49.0
Cfa000325 Carpinus fangiana HOM05D000432 ORTHO05D000320 7.9e-06 53.1 54 50.0
QL05p080718 Quercus lobata HOM05D000432 ORTHO05D000320 7.9e-06 53.1 43 58.1
Rhsim03G0013900 Rhododendron simsii HOM05D000432 ORTHO05D000320 7.9e-06 53.1 46 54.3
Rhsim13G0167600 Rhododendron simsii HOM05D000432 ORTHO05D000320 7.9e-06 53.1 46 54.3
Sabra01G0115500 Salix brachista HOM05D000432 ORTHO05D000320 7.9e-06 53.1 46 52.2


User provided reference genes

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