Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P629G11 Lonicera japonica HOM05D002761 ORTHO05D003351 4.2e-75 284.6 148 100.0
Lj5A669G10 Lonicera japonica HOM05D002761 ORTHO05D003351 4.0e-33 145.2 74 94.6
Lj5C648G5 Lonicera japonica HOM05D002761 ORTHO05D003351 1.2e-32 143.7 71 97.2
Lj5C636G2 Lonicera japonica HOM05D002761 ORTHO05D003351 1.5e-32 143.3 71 97.2
Lj5E638T0 Lonicera japonica HOM05D002761 ORTHO05D003351 2.0e-32 142.9 79 93.7
Lj5A658G21 Lonicera japonica HOM05D002761 ORTHO05D003351 2.9e-31 139.0 71 94.4
Lj5P626T11 Lonicera japonica HOM05D002761 ORTHO05D003351 3.7e-31 138.7 71 94.4
Lj5A627T18 Lonicera japonica HOM05D002761 ORTHO05D003351 3.5e-29 132.1 71 91.5
Lj5A617G14 Lonicera japonica HOM05D002761 ORTHO05D003351 2.0e-24 116.3 131 52.7
Actinidia23337 Actinidia chinensis HOM05D002761 ORTHO05D003351 2.7e-21 105.9 75 68.0
Dinv15069 Davidia involucrata HOM05D002761 ORTHO05D003351 3.5e-21 105.5 77 71.4
SGA_v2.0_scaffold118G32501 Striga asiatica HOM05D002761 ORTHO05D003351 2.3e-20 102.8 65 73.8
Lj8A206G29 Lonicera japonica HOM05D002761 ORTHO05D003351 5.1e-20 101.7 68 76.5
Migut.C01266 Erythranthe guttata HOM05D002761 ORTHO05D003351 1.1e-19 100.5 66 69.7
CSS0019088 Camellia sinensis var. sinensis HOM05D002761 ORTHO05D003351 1.9e-19 99.8 127 49.6
SalBow7G0542 Salvia bowleyana HOM05D002761 ORTHO05D003351 4.3e-19 98.6 76 64.5
Eucgr.F02604 Eucalyptus grandis HOM05D002761 ORTHO05D003351 7.3e-19 97.8 111 51.4
GSVIVG01034848001 Vitis vinifera HOM05D002761 ORTHO05D003351 7.3e-19 97.8 66 69.7
Lj5C655G9 Lonicera japonica HOM05D002180 ORTHO05D001339 9.5e-19 97.4 55 89.1
SGA_v2.0_scaffold24G10561 Striga asiatica HOM05D002761 ORTHO05D003351 1.2e-18 97.1 115 50.4
Rhsim03G0083700 Rhododendron simsii HOM05D002761 ORTHO05D003351 2.1e-18 96.3 137 46.7
TWI34G1193 Tripterygium wilfordii HOM05D002761 ORTHO05D003351 2.8e-18 95.9 133 48.1
Nn5g27660 Nelumbo nucifera HOM05D002761 ORTHO05D003351 3.6e-18 95.5 107 56.1
Eucgr.F02738 Eucalyptus grandis HOM05D002761 ORTHO05D003351 4.7e-18 95.1 111 50.5
Eucgr.F03976 Eucalyptus grandis HOM05D002761 ORTHO05D003351 8.1e-18 94.4 90 53.3
Hma1.2p1_0523F.1_g172030 Hydrangea macrophylla HOM05D002761 ORTHO05D003351 1.1e-17 94.0 69 68.1
Glyma.10G217700 Glycine max HOM05D002761 ORTHO05D003351 2.3e-17 92.8 100 51.0
Oeu021213.2 Olea europaea HOM05D002761 ORTHO05D003351 2.3e-17 92.8 66 68.2
HanXRQChr15g0490731 Helianthus annuus HOM05D002761 ORTHO05D003351 3.1e-17 92.4 89 55.1
PSO832G2735 Papaver somniferum HOM05D002761 ORTHO05D003351 3.1e-17 92.4 108 53.7
unitig_747.g21798 Utricularia gibba HOM05D002761 ORTHO05D003351 4.0e-17 92.0 67 62.7
Atru.chr13.1730 Acer truncatum HOM05D002761 ORTHO05D003351 5.2e-17 91.7 114 48.2
Eucgr.K02157 Eucalyptus grandis HOM05D002761 ORTHO05D003351 5.2e-17 91.7 90 53.3
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 6.8e-17 91.3 99 51.5
PSO339G2349 Papaver somniferum HOM05D002761 ORTHO05D003351 6.8e-17 91.3 71 63.4
Sed0000900 Sechium edule HOM05D002761 ORTHO05D003351 6.8e-17 91.3 128 45.3
TWI60G0671 Tripterygium wilfordii HOM05D002761 ORTHO05D003351 6.8e-17 91.3 66 66.7
CANSAT54G2022 Cannabis sativa HOM05D002761 ORTHO05D003351 1.2e-16 90.5 93 54.8
ECA238G1828 Erigeron canadensis HOM05D002761 ORTHO05D003351 1.2e-16 90.5 73 63.0
Cpa.g.sc66.29 Carica papaya HOM05D002761 ORTHO05D003351 1.5e-16 90.1 140 43.6
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 2.0e-16 89.7 62 69.4
HanXRQChr14g0449031 Helianthus annuus HOM05D002761 ORTHO05D003351 2.0e-16 89.7 82 54.9
Lsat_1_v5_gn_4_165000 Lactuca sativa HOM05D002761 ORTHO05D003351 2.0e-16 89.7 94 54.3
TAR381G1193 Trochodendron aralioides HOM05D002761 ORTHO05D003351 2.0e-16 89.7 72 62.5
arahy.Tifrunner.gnm1.ann1.984TS9 Arachis hypogaea HOM05D002761 ORTHO05D003351 2.6e-16 89.4 93 51.6
PSO210G0794 Papaver somniferum HOM05D002761 ORTHO05D003351 2.6e-16 89.4 60 70.0
Sc01g0001830 Simmondsia chinensis HOM05D002761 ORTHO05D003351 3.4e-16 89.0 63 63.5
Aa31LG7G6560 Aethionema arabicum HOM05D002761 ORTHO05D003351 4.4e-16 88.6 64 62.5
CAN.G761.16 Capsicum annuum HOM05D002761 ORTHO05D003351 4.4e-16 88.6 64 65.6
COL.COLO4_23637 Corchorus olitorius HOM05D002761 ORTHO05D003351 4.4e-16 88.6 63 63.5
Gohir.A05G250400 Gossypium hirsutum HOM05D002761 ORTHO05D003351 4.4e-16 88.6 134 44.0
Gorai.009G263600 Gossypium raimondii HOM05D002761 ORTHO05D003351 4.4e-16 88.6 142 43.0
Lsat_1_v5_gn_6_104920 Lactuca sativa HOM05D002761 ORTHO05D003351 4.4e-16 88.6 59 69.5
Sed0017641 Sechium edule HOM05D002761 ORTHO05D003351 4.4e-16 88.6 80 57.5
ClCG08G008700 Citrullus lanatus HOM05D002761 ORTHO05D003351 5.8e-16 88.2 85 55.3
PGR042G3223 Punica granatum HOM05D002761 ORTHO05D003351 5.8e-16 88.2 125 44.0
DCAR_001058 Daucus carota HOM05D002761 ORTHO05D003351 7.5e-16 87.8 64 64.1
Cc10_g11590 Coffea canephora HOM05D002761 ORTHO05D003351 9.9e-16 87.4 76 53.9
CsaV3_6G004730 Cucumis sativus L. HOM05D002761 ORTHO05D003351 9.9e-16 87.4 126 42.9
Lsat_1_v5_gn_6_104880 Lactuca sativa HOM05D002761 ORTHO05D003351 9.9e-16 87.4 94 53.2
Prupe.6G147900 Prunus persica HOM05D002761 ORTHO05D003351 9.9e-16 87.4 66 62.1
Thecc.08G185200 Theobroma cacao HOM05D002761 ORTHO05D003351 9.9e-16 87.4 119 44.5
MELO3C019943.2 Cucumis melo HOM05D002761 ORTHO05D003351 1.3e-15 87.0 126 42.9
Duzib177G0575 Durio zibethinus HOM05D002761 ORTHO05D003351 1.3e-15 87.0 136 43.4
PSO063G6902 Papaver somniferum HOM05D002761 ORTHO05D003351 1.3e-15 87.0 113 46.9
PSO170G5134 Papaver somniferum HOM05D002761 ORTHO05D003351 1.7e-15 86.7 113 46.0
VMungo0720G1634 Vigna mungo HOM05D002761 ORTHO05D003351 1.7e-15 86.7 117 45.3
BolC5t30873H Brassica oleracea HOM05D002761 ORTHO05D003351 2.2e-15 86.3 92 51.1
Gohir.D05G253400 Gossypium hirsutum HOM05D002761 ORTHO05D003351 2.2e-15 86.3 134 43.3
Nitab4.5_0000167g0140 Nicotiana tabacum HOM05D002761 ORTHO05D003351 2.2e-15 86.3 115 46.1
Phvul.007G088400 Phaseolus vulgaris HOM05D002761 ORTHO05D003351 2.2e-15 86.3 137 41.6
Sopen11g009950 Solanum pennellii HOM05D002761 ORTHO05D003351 2.2e-15 86.3 109 46.8
C05p21800 Brassica napus HOM05D002761 ORTHO05D003351 2.9e-15 85.9 92 51.1
Lsat_1_v5_gn_3_10980 Lactuca sativa HOM05D000331 ORTHO05D000732 2.9e-15 85.9 52 73.1
Nitab4.5_0001579g0100 Nicotiana tabacum HOM05D002761 ORTHO05D003351 2.9e-15 85.9 111 45.9
arahy.Tifrunner.gnm1.ann1.5UEM0D Arachis hypogaea HOM05D002761 ORTHO05D003351 3.7e-15 85.5 61 63.9
CDE04G1174 Ceratophyllum demersum HOM05D002761 ORTHO05D003351 3.7e-15 85.5 59 67.8
Peaxi162Scf01013g00232 Petunia axillaris HOM05D002761 ORTHO05D003351 3.7e-15 85.5 72 59.7
Psat6g173240 Pisum sativum HOM05D002761 ORTHO05D003351 3.7e-15 85.5 110 48.2
ATR0584G032 Amborella trichopoda HOM05D002761 ORTHO05D003351 4.9e-15 85.1 60 61.7
arahy.Tifrunner.gnm1.ann1.8YT8MI Arachis hypogaea HOM05D002761 ORTHO05D003351 6.4e-15 84.7 61 63.9
arahy.Tifrunner.gnm1.ann1.Q9M74Z Arachis hypogaea HOM05D002761 ORTHO05D003351 6.4e-15 84.7 61 63.9
Glyma.20G174400 Glycine max HOM05D002761 ORTHO05D003351 6.4e-15 84.7 60 65.0
Hund27091 Selenicereus undatus HOM05D002761 ORTHO05D003351 6.4e-15 84.7 115 50.4
THA.LOC104809739 Tarenaya hassleriana HOM05D002761 ORTHO05D003351 6.4e-15 84.7 80 51.2
HPP92_003659 Vanilla planifolia HOM05D002761 ORTHO05D003351 6.4e-15 84.7 59 66.1
Atru.chr4.2860 Acer truncatum HOM05D002761 ORTHO05D003351 8.3e-15 84.3 65 61.5
AUR62022701 Chenopodium quinoa HOM05D002761 ORTHO05D003351 8.3e-15 84.3 62 62.9
PSO339G0065 Papaver somniferum HOM05D002761 ORTHO05D003351 1.1e-14 84.0 69 59.4
Sopen11g009830 Solanum pennellii HOM05D002761 ORTHO05D003351 1.1e-14 84.0 109 45.9
Aqoxy5G00310 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 1.4e-14 83.6 82 56.1
Carub.0001s2218 Capsella rubella HOM05D002761 ORTHO05D003351 1.4e-14 83.6 119 43.7
CiPaw.05G166400 Carya illinoinensis HOM05D002761 ORTHO05D003351 1.4e-14 83.6 71 57.7
Ca_10624_v3 Cicer arietinum L. HOM05D002761 ORTHO05D005716 1.4e-14 83.6 63 61.9
AL1G36200 Arabidopsis lyrata HOM05D002761 ORTHO05D003351 1.9e-14 83.2 138 41.3
Manes.18G102400 Manihot esculenta HOM05D002761 ORTHO05D003351 1.9e-14 83.2 142 38.7
RcHm_v2.0_Chr7g0217311 Rosa chinensis HOM05D002761 ORTHO05D003351 1.9e-14 83.2 66 53.0
Solyc11g018770.3 Solanum lycopersicum HOM05D002761 ORTHO05D003351 1.9e-14 83.2 109 45.9
arahy.Tifrunner.gnm1.ann1.3C4BUC Arachis hypogaea HOM05D002761 ORTHO05D003351 2.4e-14 82.8 61 62.3
BcaC06g34983 Brassica carinata HOM05D002761 ORTHO05D003351 2.4e-14 82.8 67 55.2
A09p42070 Brassica napus HOM05D002761 ORTHO05D003351 2.4e-14 82.8 133 42.1
BraA09t39693Z Brassica rapa HOM05D002761 ORTHO05D003351 2.4e-14 82.8 133 42.1
Thecc.10G143100 Theobroma cacao HOM05D002761 ORTHO05D003351 2.4e-14 82.8 112 45.5
AT1G22660 Arabidopsis thaliana HOM05D002761 ORTHO05D003351 3.2e-14 82.4 66 57.6
Ciclev10000691m.g Citrus clementina HOM05D002761 ORTHO05D003351 4.1e-14 82.0 117 41.9
arahy.Tifrunner.gnm1.ann1.SG3J5R Arachis hypogaea HOM05D002761 ORTHO05D003351 5.4e-14 81.6 61 62.3
Lj4A474G12 Lonicera japonica HOM05D002761 ORTHO05D003351 5.4e-14 81.6 86 55.8
QL03p042862 Quercus lobata HOM05D002761 ORTHO05D003351 5.4e-14 81.6 66 59.1
RcHm_v2.0_Chr7g0192731 Rosa chinensis HOM05D002761 ORTHO05D003351 5.4e-14 81.6 65 55.4
Aqoxy4G00115 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 7.1e-14 81.3 59 61.0
EL10Ac1g00094 Beta vulgaris HOM05D002761 ORTHO05D003351 9.2e-14 80.9 60 61.7
Sp1g20170 Schrenkiella parvula HOM05D002761 ORTHO05D003351 9.2e-14 80.9 110 44.5
MD10G1052700 Malus domestica HOM05D002761 ORTHO05D003351 1.2e-13 80.5 99 44.4
MBI16_g07686_MAGBIO Magnolia biondii HOM05D002761 ORTHO05D003351 1.6e-13 80.1 115 43.5
RcHm_v2.0_Chr4g0442691 Rosa chinensis HOM05D002761 ORTHO05D003351 1.6e-13 80.1 66 53.0
TPR.G15701 Trifolium pratense HOM05D002761 ORTHO05D003351 1.6e-13 80.1 120 41.7
Ah.05g178240 Amaranthus hybridus HOM05D002761 ORTHO05D003351 3.5e-13 79.0 125 41.6
CARHR023030 Cardamine hirsuta HOM05D002761 ORTHO05D003351 3.5e-13 79.0 136 42.6
Haze_01552 Corylus avellana HOM05D002761 ORTHO05D003351 3.5e-13 79.0 60 60.0
Zm00001eb408070 Zea mays HOM05D002761 ORTHO05D003351 3.5e-13 79.0 59 64.4
BcaB08g37366 Brassica carinata HOM05D002761 ORTHO05D003351 4.6e-13 78.6 70 55.7
Cfa015122 Carpinus fangiana HOM05D002761 ORTHO05D003351 4.6e-13 78.6 60 60.0
Potri.013G111300 Populus trichocarpa HOM05D002761 ORTHO05D003351 4.6e-13 78.6 118 42.4
Thhalv10007128m.g Eutrema salsugineum HOM05D002761 ORTHO05D003351 6.0e-13 78.2 61 59.0
Mapoly0174s0023 Marchantia polymorpha HOM05D002761 ORTHO05D003351 7.8e-13 77.8 103 41.7
Medtr1g096870 Medicago truncatula HOM05D002761 ORTHO05D003351 7.8e-13 77.8 92 47.8
A08p03170 Brassica napus HOM05D002761 ORTHO05D003351 1.0e-12 77.4 59 54.2
BraA08t32349Z Brassica rapa HOM05D002761 ORTHO05D003351 1.0e-12 77.4 59 54.2
Lalb_Chr06g0161951 Lupinus albus HOM05D002761 ORTHO05D003351 1.0e-12 77.4 109 41.3
Oeu045162.1 Olea europaea HOM05D002761 ORTHO05D003351 1.0e-12 77.4 88 50.0
RcHm_v2.0_Chr4g0411681 Rosa chinensis HOM05D002761 ORTHO05D003351 1.0e-12 77.4 66 51.5
A07p14260 Brassica napus HOM05D002761 ORTHO05D003351 1.3e-12 77.0 140 40.7
BraA07t29183Z Brassica rapa HOM05D002761 ORTHO05D003351 1.3e-12 77.0 140 40.7
BolC7t42629H Brassica oleracea HOM05D002761 ORTHO05D003351 1.7e-12 76.6 125 42.4
FAN07G1831 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.7e-12 76.6 70 50.0
FAN22G1178 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.7e-12 76.6 70 50.0
vmacro12482 Vaccinium macrocarpon HOM05D002761 ORTHO05D003351 1.7e-12 76.6 101 44.6
FvH4_4g33440 Fragaria vesca HOM05D002761 ORTHO05D003351 2.3e-12 76.3 66 51.5
FAN12G1608 Fragaria x ananassa HOM05D002761 ORTHO05D003351 2.3e-12 76.3 70 50.0
SHI09025 Sapria himalayana HOM05D002761 ORTHO05D003351 2.3e-12 76.3 108 41.7
FAN17G0376 Fragaria x ananassa HOM05D002761 ORTHO05D003351 3.0e-12 75.9 70 48.6
SMO172G0205 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 3.9e-12 75.5 60 58.3
Lj5g0020162 Lotus japonicus HOM05D002761 ORTHO05D003351 5.1e-12 75.1 91 44.0
Medtr1g096810 Medicago truncatula HOM05D002761 ORTHO05D003351 6.6e-12 74.7 65 55.4
BcaB03g14191 Brassica carinata HOM05D002761 ORTHO05D003351 8.6e-12 74.3 115 42.6
Nitab4.5_0000881g0040 Nicotiana tabacum HOM05D002761 ORTHO05D003351 8.6e-12 74.3 60 63.3
Os12g0171200 Oryza sativa ssp. japonica HOM05D002761 ORTHO05D003351 1.1e-11 73.9 113 39.8
QL08p012947 Quercus lobata HOM05D002761 ORTHO05D003351 1.1e-11 73.9 70 52.9
CARHR163300 Cardamine hirsuta HOM05D002761 ORTHO05D003351 2.5e-11 72.8 60 58.3
QL08p012793 Quercus lobata HOM05D002761 ORTHO05D003351 2.5e-11 72.8 70 51.4
C07p20980 Brassica napus HOM05D002761 ORTHO05D003351 4.3e-11 72.0 125 41.6
Aqoxy1G03086 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 7.3e-11 71.2 53 66.0
PRCOL_00003563 Prasinoderma coloniale HOM05D002761 ORTHO05D003351 2.8e-10 69.3 71 49.3
AagrBONN_evm.TU.Sc2ySwM_117.2494 Anthoceros agrestis HOM05D002761 ORTHO05D003351 1.1e-09 67.4 57 57.9
Cre17.g726100 Chlamydomonas reinhardtii HOM05D002761 ORTHO05D003351 5.2e-09 65.1 59 52.5
LjContig00141g0028023 Lotus japonicus HOM05D002761 ORTHO05D003351 2.0e-08 63.2 58 55.2
MCO07G705 Micromonas commoda HOM05D002761 ORTHO05D003351 2.0e-08 63.2 52 57.7
Rhsim06G0031300 Rhododendron simsii HOM05D002761 ORTHO05D003351 2.0e-08 63.2 70 47.1
Eucgr.F02594 Eucalyptus grandis HOM05D002761 ORTHO05D003351 2.6e-08 62.8 51 56.9
SMO351G0639 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 2.9e-07 59.3 55 50.9
AUR62004635 Chenopodium quinoa HOM05D002761 ORTHO05D003351 8.4e-07 57.8 50 56.0
C05p08980 Brassica napus HOM05D002761 ORTHO05D003351 1.4e-06 57.0 61 44.3
BcaC07g41805 Brassica carinata HOM05D002761 ORTHO05D003351 3.2e-06 55.8 54 51.9


User provided reference genes

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