Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P626T11 Lonicera japonica HOM05D002761 ORTHO05D003351 1.0e-54 216.5 109 100.0
Lj5A669G10 Lonicera japonica HOM05D002761 ORTHO05D003351 3.2e-48 194.9 107 90.7
Lj5C648G5 Lonicera japonica HOM05D002761 ORTHO05D003351 4.4e-45 184.5 96 95.8
Lj5C636G2 Lonicera japonica HOM05D002761 ORTHO05D003351 5.7e-45 184.1 96 95.8
Lj5A658G21 Lonicera japonica HOM05D002761 ORTHO05D003351 1.6e-42 176.0 96 91.7
Lj5A627T18 Lonicera japonica HOM05D002761 ORTHO05D003351 4.2e-40 167.9 103 83.5
Lj5A617G14 Lonicera japonica HOM05D002761 ORTHO05D003351 7.5e-37 157.1 156 59.0
Lj5P629G11 Lonicera japonica HOM05D002761 ORTHO05D003351 4.7e-31 137.9 71 94.4
Lj8A206G29 Lonicera japonica HOM05D002761 ORTHO05D003351 1.0e-30 136.7 95 76.8
Dinv15069 Davidia involucrata HOM05D002761 ORTHO05D003351 7.0e-27 124.0 97 68.0
Actinidia23337 Actinidia chinensis HOM05D002761 ORTHO05D003351 3.5e-26 121.7 92 65.2
SGA_v2.0_scaffold118G32501 Striga asiatica HOM05D002761 ORTHO05D003351 5.9e-26 120.9 88 65.9
Migut.C01266 Erythranthe guttata HOM05D002761 ORTHO05D003351 1.3e-25 119.8 90 64.4
GSVIVG01034848001 Vitis vinifera HOM05D002761 ORTHO05D003351 2.3e-25 119.0 88 65.9
CSS0019088 Camellia sinensis var. sinensis HOM05D002761 ORTHO05D003351 2.9e-25 118.6 94 61.7
SGA_v2.0_scaffold24G10561 Striga asiatica HOM05D002761 ORTHO05D003351 3.8e-25 118.2 88 64.8
SalBow7G0542 Salvia bowleyana HOM05D002761 ORTHO05D003351 3.3e-24 115.2 90 63.3
TWI34G1193 Tripterygium wilfordii HOM05D002761 ORTHO05D003351 5.5e-24 114.4 83 66.3
Rhsim03G0083700 Rhododendron simsii HOM05D002761 ORTHO05D003351 1.2e-23 113.2 87 64.4
TAR381G1193 Trochodendron aralioides HOM05D002761 ORTHO05D003351 1.2e-23 113.2 84 67.9
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 3.6e-23 111.7 87 64.4
Nn5g27660 Nelumbo nucifera HOM05D002761 ORTHO05D003351 3.6e-23 111.7 93 61.3
Lsat_1_v5_gn_4_165000 Lactuca sativa HOM05D002761 ORTHO05D003351 6.1e-23 110.9 91 64.8
PSO063G6902 Papaver somniferum HOM05D002761 ORTHO05D003351 6.1e-23 110.9 84 61.9
PSO170G5134 Papaver somniferum HOM05D002761 ORTHO05D003351 6.1e-23 110.9 84 61.9
Nitab4.5_0001579g0100 Nicotiana tabacum HOM05D002761 ORTHO05D003351 1.0e-22 110.2 88 61.4
Nitab4.5_0000167g0140 Nicotiana tabacum HOM05D002761 ORTHO05D003351 1.4e-22 109.8 88 61.4
CAN.G761.16 Capsicum annuum HOM05D002761 ORTHO05D003351 1.8e-22 109.4 89 60.7
PSO210G0794 Papaver somniferum HOM05D002761 ORTHO05D003351 1.8e-22 109.4 81 66.7
COL.COLO4_23637 Corchorus olitorius HOM05D002761 ORTHO05D003351 3.0e-22 108.6 83 61.4
Hma1.2p1_0523F.1_g172030 Hydrangea macrophylla HOM05D002761 ORTHO05D003351 3.0e-22 108.6 87 62.1
Cpa.g.sc66.29 Carica papaya HOM05D002761 ORTHO05D003351 4.0e-22 108.2 92 59.8
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 4.0e-22 108.2 80 66.2
Glyma.10G217700 Glycine max HOM05D002761 ORTHO05D003351 4.0e-22 108.2 83 60.2
HanXRQChr15g0490731 Helianthus annuus HOM05D002761 ORTHO05D003351 5.2e-22 107.8 83 63.9
PSO832G2735 Papaver somniferum HOM05D002761 ORTHO05D003351 5.2e-22 107.8 81 66.7
Lsat_1_v5_gn_6_104880 Lactuca sativa HOM05D002761 ORTHO05D003351 6.8e-22 107.5 91 62.6
Oeu021213.2 Olea europaea HOM05D002761 ORTHO05D003351 6.8e-22 107.5 90 61.1
Solyc11g018770.3 Solanum lycopersicum HOM05D002761 ORTHO05D003351 6.8e-22 107.5 88 60.2
Sopen11g009950 Solanum pennellii HOM05D002761 ORTHO05D003351 6.8e-22 107.5 88 60.2
Aqoxy5G00310 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 8.9e-22 107.1 96 58.3
ECA238G1828 Erigeron canadensis HOM05D002761 ORTHO05D003351 8.9e-22 107.1 76 69.7
PSO339G2349 Papaver somniferum HOM05D002761 ORTHO05D003351 8.9e-22 107.1 96 58.3
TWI60G0671 Tripterygium wilfordii HOM05D002761 ORTHO05D003351 8.9e-22 107.1 81 63.0
CANSAT54G2022 Cannabis sativa HOM05D002761 ORTHO05D003351 1.2e-21 106.7 84 61.9
DCAR_001058 Daucus carota HOM05D002761 ORTHO05D003351 1.5e-21 106.3 88 59.1
CDE04G1174 Ceratophyllum demersum HOM05D002761 ORTHO05D003351 2.0e-21 105.9 83 61.4
PGR042G3223 Punica granatum HOM05D002761 ORTHO05D003351 2.0e-21 105.9 89 56.2
unitig_747.g21798 Utricularia gibba HOM05D002761 ORTHO05D003351 2.0e-21 105.9 92 54.3
Eucgr.F02604 Eucalyptus grandis HOM05D002761 ORTHO05D003351 2.6e-21 105.5 86 58.1
Lsat_1_v5_gn_6_104920 Lactuca sativa HOM05D002761 ORTHO05D003351 2.6e-21 105.5 83 62.7
Hund27091 Selenicereus undatus HOM05D002761 ORTHO05D003351 2.6e-21 105.5 83 61.4
Sopen11g009830 Solanum pennellii HOM05D002761 ORTHO05D003351 2.6e-21 105.5 88 59.1
Aqoxy4G00115 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 3.4e-21 105.1 83 60.2
Thecc.08G185200 Theobroma cacao HOM05D002761 ORTHO05D003351 3.4e-21 105.1 79 63.3
HanXRQChr14g0449031 Helianthus annuus HOM05D002761 ORTHO05D003351 4.4e-21 104.8 88 61.4
Sed0017641 Sechium edule HOM05D002761 ORTHO05D003351 4.4e-21 104.8 84 58.3
MBI16_g07686_MAGBIO Magnolia biondii HOM05D002761 ORTHO05D003351 5.7e-21 104.4 83 61.4
Lsat_1_v5_gn_3_10980 Lactuca sativa HOM05D000331 ORTHO05D000732 7.5e-21 104.0 76 61.8
Phvul.007G088400 Phaseolus vulgaris HOM05D002761 ORTHO05D003351 9.8e-21 103.6 83 56.6
Sc01g0001830 Simmondsia chinensis HOM05D002761 ORTHO05D003351 9.8e-21 103.6 84 56.0
Lj4A474G12 Lonicera japonica HOM05D002761 ORTHO05D003351 1.3e-20 103.2 107 56.1
Thecc.10G143100 Theobroma cacao HOM05D002761 ORTHO05D003351 1.3e-20 103.2 78 62.8
VMungo0720G1634 Vigna mungo HOM05D002761 ORTHO05D003351 1.3e-20 103.2 83 56.6
AUR62022701 Chenopodium quinoa HOM05D002761 ORTHO05D003351 1.7e-20 102.8 86 58.1
CsaV3_6G004730 Cucumis sativus L. HOM05D002761 ORTHO05D003351 1.7e-20 102.8 93 54.8
Prupe.6G147900 Prunus persica HOM05D002761 ORTHO05D003351 1.7e-20 102.8 84 58.3
Sed0000900 Sechium edule HOM05D002761 ORTHO05D003351 1.7e-20 102.8 91 53.8
HPP92_003659 Vanilla planifolia HOM05D002761 ORTHO05D003351 1.7e-20 102.8 77 62.3
arahy.Tifrunner.gnm1.ann1.5UEM0D Arachis hypogaea HOM05D002761 ORTHO05D003351 2.2e-20 102.4 81 58.0
arahy.Tifrunner.gnm1.ann1.984TS9 Arachis hypogaea HOM05D002761 ORTHO05D003351 2.2e-20 102.4 81 58.0
MELO3C019943.2 Cucumis melo HOM05D002761 ORTHO05D003351 2.2e-20 102.4 84 57.1
Aa31LG7G6560 Aethionema arabicum HOM05D002761 ORTHO05D003351 2.8e-20 102.1 82 59.8
Eucgr.F02738 Eucalyptus grandis HOM05D002761 ORTHO05D003351 2.8e-20 102.1 86 57.0
Gohir.A05G250400 Gossypium hirsutum HOM05D002761 ORTHO05D003351 2.8e-20 102.1 79 60.8
Gohir.D05G253400 Gossypium hirsutum HOM05D002761 ORTHO05D003351 2.8e-20 102.1 79 60.8
Gorai.009G263600 Gossypium raimondii HOM05D002761 ORTHO05D003351 2.8e-20 102.1 79 60.8
arahy.Tifrunner.gnm1.ann1.Q9M74Z Arachis hypogaea HOM05D002761 ORTHO05D003351 3.7e-20 101.7 81 58.0
Glyma.20G174400 Glycine max HOM05D002761 ORTHO05D003351 3.7e-20 101.7 80 58.8
Cc10_g11590 Coffea canephora HOM05D002761 ORTHO05D003351 4.9e-20 101.3 92 54.3
Eucgr.K02157 Eucalyptus grandis HOM05D002761 ORTHO05D003351 4.9e-20 101.3 82 58.5
Manes.18G102400 Manihot esculenta HOM05D002761 ORTHO05D003351 4.9e-20 101.3 86 55.8
CiPaw.05G166400 Carya illinoinensis HOM05D002761 ORTHO05D003351 6.3e-20 100.9 91 56.0
Eucgr.F03976 Eucalyptus grandis HOM05D002761 ORTHO05D003351 6.3e-20 100.9 88 54.5
Ca_10624_v3 Cicer arietinum L. HOM05D002761 ORTHO05D005716 8.3e-20 100.5 83 56.6
Duzib177G0575 Durio zibethinus HOM05D002761 ORTHO05D003351 8.3e-20 100.5 81 59.3
Ah.05g178240 Amaranthus hybridus HOM05D002761 ORTHO05D003351 1.1e-19 100.1 83 57.8
PSO339G0065 Papaver somniferum HOM05D002761 ORTHO05D003351 1.1e-19 100.1 80 63.8
Psat6g173240 Pisum sativum HOM05D002761 ORTHO05D003351 1.1e-19 100.1 91 52.7
BcaC06g34983 Brassica carinata HOM05D002761 ORTHO05D003351 1.4e-19 99.8 79 58.2
Lj5A657T12 Lonicera japonica HOM05D002761 ORTHO05D003351 1.8e-19 99.4 57 84.2
Mapoly0174s0023 Marchantia polymorpha HOM05D002761 ORTHO05D003351 1.8e-19 99.4 84 54.8
Peaxi162Scf01013g00232 Petunia axillaris HOM05D002761 ORTHO05D003351 1.8e-19 99.4 85 58.8
Atru.chr13.1730 Acer truncatum HOM05D002761 ORTHO05D003351 2.4e-19 99.0 75 61.3
arahy.Tifrunner.gnm1.ann1.8YT8MI Arachis hypogaea HOM05D002761 ORTHO05D003351 2.4e-19 99.0 87 55.2
BolC7t42629H Brassica oleracea HOM05D002761 ORTHO05D003351 5.4e-19 97.8 79 57.0
SMO172G0205 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 5.4e-19 97.8 85 54.1
AT1G22660 Arabidopsis thaliana HOM05D002761 ORTHO05D003351 7.0e-19 97.4 82 57.3
arahy.Tifrunner.gnm1.ann1.3C4BUC Arachis hypogaea HOM05D002761 ORTHO05D003351 7.0e-19 97.4 87 54.0
EL10Ac1g00094 Beta vulgaris HOM05D002761 ORTHO05D003351 7.0e-19 97.4 84 56.0
TPR.G15701 Trifolium pratense HOM05D002761 ORTHO05D003351 7.0e-19 97.4 90 54.4
ATR0584G032 Amborella trichopoda HOM05D002761 ORTHO05D003351 9.2e-19 97.1 80 55.0
Potri.013G111300 Populus trichocarpa HOM05D002761 ORTHO05D003351 9.2e-19 97.1 86 52.3
AL1G36200 Arabidopsis lyrata HOM05D002761 ORTHO05D003351 1.2e-18 96.7 82 57.3
Ciclev10000691m.g Citrus clementina HOM05D002761 ORTHO05D003351 1.2e-18 96.7 80 56.2
arahy.Tifrunner.gnm1.ann1.SG3J5R Arachis hypogaea HOM05D002761 ORTHO05D003351 1.6e-18 96.3 87 54.0
BolC5t30873H Brassica oleracea HOM05D002761 ORTHO05D003351 1.6e-18 96.3 79 59.5
Haze_01552 Corylus avellana HOM05D002761 ORTHO05D003351 1.6e-18 96.3 80 57.5
Lalb_Chr06g0161951 Lupinus albus HOM05D002761 ORTHO05D003351 1.6e-18 96.3 81 54.3
Oeu045162.1 Olea europaea HOM05D002761 ORTHO05D003351 1.6e-18 96.3 105 51.4
THA.LOC104809739 Tarenaya hassleriana HOM05D002761 ORTHO05D003351 1.6e-18 96.3 96 51.0
BcaB03g14191 Brassica carinata HOM05D002761 ORTHO05D003351 2.0e-18 95.9 79 57.0
A07p14260 Brassica napus HOM05D002761 ORTHO05D003351 2.0e-18 95.9 79 57.0
C05p21800 Brassica napus HOM05D002761 ORTHO05D003351 2.0e-18 95.9 79 59.5
BraA07t29183Z Brassica rapa HOM05D002761 ORTHO05D003351 2.0e-18 95.9 79 57.0
Cfa015122 Carpinus fangiana HOM05D002761 ORTHO05D003351 2.0e-18 95.9 80 57.5
vmacro12482 Vaccinium macrocarpon HOM05D002761 ORTHO05D003351 2.0e-18 95.9 117 47.0
A09p42070 Brassica napus HOM05D002761 ORTHO05D003351 2.7e-18 95.5 79 59.5
QL03p042862 Quercus lobata HOM05D002761 ORTHO05D003351 2.7e-18 95.5 85 54.1
Sp1g20170 Schrenkiella parvula HOM05D002761 ORTHO05D003351 2.7e-18 95.5 79 59.5
BraA09t39693Z Brassica rapa HOM05D002761 ORTHO05D003351 3.5e-18 95.1 79 59.5
MD10G1052700 Malus domestica HOM05D002761 ORTHO05D003351 3.5e-18 95.1 91 50.5
Os12g0171200 Oryza sativa ssp. japonica HOM05D002761 ORTHO05D003351 3.5e-18 95.1 102 50.0
RcHm_v2.0_Chr7g0192731 Rosa chinensis HOM05D002761 ORTHO05D003351 3.5e-18 95.1 84 48.8
RcHm_v2.0_Chr4g0442691 Rosa chinensis HOM05D002761 ORTHO05D003351 4.5e-18 94.7 84 51.2
Aqoxy1G03086 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 7.8e-18 94.0 78 61.5
C07p20980 Brassica napus HOM05D002761 ORTHO05D003351 7.8e-18 94.0 79 55.7
Thhalv10007128m.g Eutrema salsugineum HOM05D002761 ORTHO05D003351 1.0e-17 93.6 79 58.2
Zm00001eb408070 Zea mays HOM05D002761 ORTHO05D003351 1.0e-17 93.6 83 55.4
Carub.0001s2218 Capsella rubella HOM05D002761 ORTHO05D003351 1.3e-17 93.2 82 53.7
CARHR023030 Cardamine hirsuta HOM05D002761 ORTHO05D003351 1.7e-17 92.8 82 53.7
RcHm_v2.0_Chr4g0411681 Rosa chinensis HOM05D002761 ORTHO05D003351 2.3e-17 92.4 84 50.0
ClCG08G008700 Citrullus lanatus HOM05D002761 ORTHO05D003351 2.9e-17 92.0 74 59.5
Lj5A650G23 Lonicera japonica HOM05D002761 ORTHO05D003351 2.9e-17 92.0 45 97.8
A08p03170 Brassica napus HOM05D002761 ORTHO05D003351 6.6e-17 90.9 78 52.6
BraA08t32349Z Brassica rapa HOM05D002761 ORTHO05D003351 6.6e-17 90.9 78 52.6
Lj5A633T18 Lonicera japonica HOM05D002761 ORTHO05D003351 6.6e-17 90.9 45 95.6
Lj5A655T26 Lonicera japonica HOM05D002761 ORTHO05D003351 6.6e-17 90.9 45 95.6
RcHm_v2.0_Chr7g0217311 Rosa chinensis HOM05D002761 ORTHO05D003351 8.6e-17 90.5 80 46.2
FvH4_4g33440 Fragaria vesca HOM05D002761 ORTHO05D003351 1.5e-16 89.7 80 50.0
FAN07G1831 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.5e-16 89.7 80 50.0
FAN12G1608 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.5e-16 89.7 80 50.0
FAN22G1178 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.5e-16 89.7 80 50.0
Lj5g0020162 Lotus japonicus HOM05D002761 ORTHO05D003351 1.5e-16 89.7 77 53.2
Atru.chr4.2860 Acer truncatum HOM05D002761 ORTHO05D003351 1.9e-16 89.4 74 56.8
FAN17G0376 Fragaria x ananassa HOM05D002761 ORTHO05D003351 2.5e-16 89.0 80 48.8
Lj5A652T14 Lonicera japonica HOM05D002761 ORTHO05D003351 4.3e-16 88.2 45 93.3
Lj5A654G16 Lonicera japonica HOM05D002761 ORTHO05D003351 4.3e-16 88.2 45 93.3
QL08p012947 Quercus lobata HOM05D002761 ORTHO05D003351 4.3e-16 88.2 90 48.9
SHI09025 Sapria himalayana HOM05D002761 ORTHO05D003351 5.6e-16 87.8 83 51.8
Medtr1g096870 Medicago truncatula HOM05D002761 ORTHO05D003351 7.3e-16 87.4 70 57.1
QL08p012793 Quercus lobata HOM05D002761 ORTHO05D003351 1.2e-15 86.7 90 47.8
Lj5A659G19 Lonicera japonica HOM05D002761 ORTHO05D018170 1.6e-15 86.3 45 91.1
AagrBONN_evm.TU.Sc2ySwM_117.2494 Anthoceros agrestis HOM05D002761 ORTHO05D003351 2.1e-15 85.9 77 53.2
Lj5C655G9 Lonicera japonica HOM05D002180 ORTHO05D001339 3.6e-15 85.1 52 82.7
CARHR163300 Cardamine hirsuta HOM05D002761 ORTHO05D003351 6.1e-15 84.3 78 55.1
PRCOL_00003563 Prasinoderma coloniale HOM05D002761 ORTHO05D003351 8.0e-15 84.0 83 51.8
Medtr1g096810 Medicago truncatula HOM05D002761 ORTHO05D003351 4.0e-14 81.6 72 54.2
BcaB08g37366 Brassica carinata HOM05D002761 ORTHO05D003351 8.9e-14 80.5 99 46.5
MCO07G705 Micromonas commoda HOM05D002761 ORTHO05D003351 2.6e-13 79.0 76 51.3
Lj5A634G3 Lonicera japonica HOM05D002761 ORTHO05D003351 5.8e-13 77.8 43 86.0
Cre17.g726100 Chlamydomonas reinhardtii HOM05D002761 ORTHO05D003351 9.8e-13 77.0 76 48.7
Lj5E638T0 Lonicera japonica HOM05D002761 ORTHO05D003351 1.3e-12 76.6 42 92.9
LjContig00141g0028023 Lotus japonicus HOM05D002761 ORTHO05D003351 1.3e-12 76.6 80 51.2
Nitab4.5_0000881g0040 Nicotiana tabacum HOM05D002761 ORTHO05D003351 5.4e-11 71.2 60 61.7
Rhsim06G0031300 Rhododendron simsii HOM05D002761 ORTHO05D003351 1.6e-10 69.7 97 41.2
HPP92_003668 Vanilla planifolia HOM05D002761 ORTHO05D003351 1.0e-09 67.0 79 46.8
C05p08980 Brassica napus HOM05D002761 ORTHO05D003351 1.3e-09 66.6 84 41.7
Lj6g0007045 Lotus japonicus HOM05D002761 ORTHO05D003351 1.9e-08 62.8 49 57.1
BcaC05g24852 Brassica carinata HOM05D002761 ORTHO05D003351 4.3e-08 61.6 84 41.7
Rhsim13G0160800 Rhododendron simsii HOM05D002761 ORTHO05D003351 4.3e-08 61.6 72 50.0
SMO351G0639 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 1.2e-07 60.1 62 45.2
Eucgr.F02594 Eucalyptus grandis HOM05D002761 ORTHO05D003351 3.6e-07 58.5 51 54.9
AUR62004635 Chenopodium quinoa HOM05D002761 ORTHO05D003351 4.0e-06 55.1 50 54.0


User provided reference genes

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