Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P364T14 Lonicera japonica HOM05D000101 ORTHO05D003282 1.2e-121 439.9 219 100.0
Lj5C367T1 Lonicera japonica HOM05D000101 ORTHO05D003282 4.1e-95 351.7 213 83.1
Lj5A361T45 Lonicera japonica HOM05D000101 ORTHO05D003282 2.7e-94 349.0 213 84.0
Lj5C359T4 Lonicera japonica HOM05D000101 ORTHO05D003282 1.4e-90 336.7 213 79.3
Lj5C362G2 Lonicera japonica HOM05D000101 ORTHO05D003282 2.7e-86 322.4 213 77.0
Lj5C363T1 Lonicera japonica HOM05D000101 ORTHO05D003282 9.6e-84 313.9 208 78.4
Lj5C364T5 Lonicera japonica HOM05D000101 ORTHO05D003282 4.0e-82 308.5 215 74.9
Lj5E366T0 Lonicera japonica HOM05D000101 ORTHO05D235418 1.5e-65 253.4 170 75.3
Lj5C368T3 Lonicera japonica HOM05D000101 ORTHO05D234080 2.2e-48 196.4 150 69.3
Lj5C304T0 Lonicera japonica HOM05D000101 ORTHO05D003282 3.9e-45 185.7 211 46.9
Lj5C375T0 Lonicera japonica HOM05D000101 ORTHO05D003282 8.2e-43 177.9 211 46.4
Lj5C293G2 Lonicera japonica HOM05D000101 ORTHO05D003282 2.0e-41 173.3 212 45.8
Lj5A602T47 Lonicera japonica HOM05D000101 ORTHO05D003282 1.8e-26 123.6 207 37.7
Lj5C606T3 Lonicera japonica HOM05D000101 ORTHO05D003282 1.8e-26 123.6 207 37.7
Lsat_1_v5_gn_9_121401 Lactuca sativa HOM05D000101 ORTHO05D003282 5.9e-25 118.6 220 37.7
Lj5A273T45 Lonicera japonica HOM05D000101 ORTHO05D003282 8.5e-24 114.8 200 37.5
Lj5C275T1 Lonicera japonica HOM05D000101 ORTHO05D003282 8.5e-24 114.8 185 41.1
Lj5C276T11 Lonicera japonica HOM05D000101 ORTHO05D003282 1.1e-23 114.4 218 36.7
CSS0015515 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D003282 4.2e-23 112.5 195 35.9
Lj5A582T23 Lonicera japonica HOM05D000101 ORTHO05D003282 7.2e-23 111.7 209 35.4
Lj5C15T0 Lonicera japonica HOM05D000101 ORTHO05D003282 3.6e-22 109.4 207 34.3
Lj5C584T0 Lonicera japonica HOM05D000101 ORTHO05D003282 6.1e-22 108.6 182 35.7
Lj5A271T96 Lonicera japonica HOM05D000101 ORTHO05D003282 1.8e-21 107.1 209 35.9
Lj5C573T0 Lonicera japonica HOM05D000101 ORTHO05D003282 2.3e-21 106.7 209 35.4
Lj5C574T6 Lonicera japonica HOM05D000101 ORTHO05D003282 2.3e-21 106.7 182 37.4
Actinidia38982 Actinidia chinensis HOM05D000101 ORTHO05D003282 4.0e-21 105.9 183 33.9
Lj5C580T1 Lonicera japonica HOM05D000101 ORTHO05D003282 3.4e-20 102.8 212 32.1
Lj5C18T0 Lonicera japonica HOM05D000101 ORTHO05D003282 7.5e-20 101.7 209 32.5
Rhsim11G0062300 Rhododendron simsii HOM05D000101 ORTHO05D003282 9.8e-20 101.3 193 33.7
Lj5C385T2 Lonicera japonica HOM05D000101 ORTHO05D003282 1.7e-19 100.5 191 36.6
Rhsim11G0064400 Rhododendron simsii HOM05D000101 ORTHO05D003282 2.8e-19 99.8 210 32.9
Rhsim11G0064500 Rhododendron simsii HOM05D000101 ORTHO05D003282 2.8e-19 99.8 210 32.9
Rhsim11G0119400 Rhododendron simsii HOM05D000101 ORTHO05D003282 2.8e-19 99.8 200 32.0
RhsimUnG0032200 Rhododendron simsii HOM05D000101 ORTHO05D003282 2.8e-19 99.8 200 32.0
COL.COLO4_28824 Corchorus olitorius HOM05D000101 ORTHO05D003282 1.1e-18 97.8 210 33.8
Rhsim11G0119900 Rhododendron simsii HOM05D000101 ORTHO05D003282 2.4e-18 96.7 200 31.0
vmacro01689 Vaccinium macrocarpon HOM05D000101 ORTHO05D003282 2.4e-18 96.7 190 34.2
Thecc.03G111300 Theobroma cacao HOM05D000101 ORTHO05D003282 7.0e-18 95.1 213 32.9
Actinidia38979 Actinidia chinensis HOM05D000101 ORTHO05D003282 1.2e-17 94.4 195 31.3
CSS0050315 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D003282 1.6e-17 94.0 213 32.9
Rhsim11G0118800 Rhododendron simsii HOM05D000101 ORTHO05D003282 5.9e-17 92.0 220 32.3
RhsimUnG0074400 Rhododendron simsii HOM05D000101 ORTHO05D003282 5.9e-17 92.0 200 31.0
Thecc.02G013800 Theobroma cacao HOM05D000101 ORTHO05D003282 1.7e-16 90.5 169 35.5
Lj5C274T1 Lonicera japonica HOM05D000101 ORTHO05D003282 2.2e-16 90.1 136 41.2
Gohir.A07G057900 Gossypium hirsutum HOM05D000101 ORTHO05D003282 2.9e-16 89.7 204 30.9
RhsimUnG0032000 Rhododendron simsii HOM05D000101 ORTHO05D003282 2.9e-16 89.7 194 32.5
Gorai.001G066200 Gossypium raimondii HOM05D000101 ORTHO05D003282 5.0e-16 89.0 204 30.4
Gohir.D07G062700 Gossypium hirsutum HOM05D000101 ORTHO05D003282 6.5e-16 88.6 204 30.4
Actinidia26187 Actinidia chinensis HOM05D000101 ORTHO05D003282 8.5e-16 88.2 198 34.3
Duzib205G1449 Durio zibethinus HOM05D000101 ORTHO05D003282 1.9e-15 87.0 217 30.4
RhsimUnG0202000 Rhododendron simsii HOM05D000101 ORTHO05D003282 7.2e-15 85.1 196 32.7
DCAR_001710 Daucus carota HOM05D000101 ORTHO05D003282 1.6e-14 84.0 209 31.6
ECA234G1788 Erigeron canadensis HOM05D000101 ORTHO05D003282 2.1e-14 83.6 175 33.1
Lj5C574G1 Lonicera japonica HOM05D000101 ORTHO05D003282 1.8e-13 80.5 80 51.2
Thecc.02G013100 Theobroma cacao HOM05D000101 ORTHO05D003282 1.8e-13 80.5 197 28.4
Duzib151G0598 Durio zibethinus HOM05D000101 ORTHO05D003282 2.3e-13 80.1 184 26.6
HanXRQChr03g0065841 Helianthus annuus HOM05D000101 ORTHO05D003282 2.3e-13 80.1 174 32.8
Rhsim11G0120100 Rhododendron simsii HOM05D000101 ORTHO05D003282 2.3e-13 80.1 196 31.6
Lj4g0017827 Lotus japonicus HOM05D000101 ORTHO05D003282 5.2e-13 79.0 212 30.2
Thecc.04G166700 Theobroma cacao HOM05D000101 ORTHO05D003282 6.8e-13 78.6 160 28.8
QL02p102988 Quercus lobata HOM05D000101 ORTHO05D003282 1.5e-12 77.4 177 32.8
Glyma.05G165600 Glycine max HOM05D000101 ORTHO05D003282 2.6e-12 76.6 215 31.2
Lj5A570T22 Lonicera japonica HOM05D000101 ORTHO05D003282 3.4e-12 76.3 65 55.4
Thecc.02G013300 Theobroma cacao HOM05D000101 ORTHO05D003282 4.4e-12 75.9 107 37.4
VMungo0251G1948 Vigna mungo HOM05D000101 ORTHO05D003282 5.7e-12 75.5 176 30.7
RhsimUnG0074100 Rhododendron simsii HOM05D000101 ORTHO05D003282 7.5e-12 75.1 239 27.6
Eucgr.L00913 Eucalyptus grandis HOM05D000101 ORTHO05D003282 9.8e-12 74.7 78 41.0
QL02p102345 Quercus lobata HOM05D000101 ORTHO05D003282 1.3e-11 74.3 177 32.8
TAR624G1018 Trochodendron aralioides HOM05D000101 ORTHO05D003282 1.3e-11 74.3 172 26.7
Eucgr.L01865 Eucalyptus grandis HOM05D000101 ORTHO05D003282 1.7e-11 73.9 78 41.0
Glyma.08G123300 Glycine max HOM05D000101 ORTHO05D003282 1.7e-11 73.9 212 31.1
Manes.10G114062 Manihot esculenta HOM05D000101 ORTHO05D003282 1.7e-11 73.9 219 27.4
QL93p1902_0371 Quercus lobata HOM05D000101 ORTHO05D003282 3.7e-11 72.8 168 29.8
Cfa026050 Carpinus fangiana HOM05D000101 ORTHO05D003282 4.9e-11 72.4 167 31.1
COL.COLO4_08148 Corchorus olitorius HOM05D000101 ORTHO05D003282 4.9e-11 72.4 154 27.3
MBI02_g29699_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 4.9e-11 72.4 190 27.4
Rhsim11G0120800 Rhododendron simsii HOM05D000101 ORTHO05D003282 6.3e-11 72.0 198 27.3
Manes.10G111300 Manihot esculenta HOM05D000101 ORTHO05D003282 1.1e-10 71.2 230 27.4
PGR042G3275 Punica granatum HOM05D000101 ORTHO05D003282 1.4e-10 70.9 152 32.9
Nn1g09693 Nelumbo nucifera HOM05D000101 ORTHO05D003282 1.8e-10 70.5 140 33.6
Lj5C381T0 Lonicera japonica HOM05D000101 ORTHO05D003282 2.4e-10 70.1 130 36.2
Rhsim11G0119600 Rhododendron simsii HOM05D000101 ORTHO05D003282 3.1e-10 69.7 195 28.7
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 4.1e-10 69.3 179 30.7
QL02p102261 Quercus lobata HOM05D000101 ORTHO05D003282 4.1e-10 69.3 179 28.5
Hund03195 Selenicereus undatus HOM05D000101 ORTHO05D003282 4.1e-10 69.3 215 27.4
QL02p102193 Quercus lobata HOM05D000101 ORTHO05D003282 5.4e-10 68.9 174 29.3
QL10p054822 Quercus lobata HOM05D000101 ORTHO05D003282 5.4e-10 68.9 159 28.3
QL02p102834 Quercus lobata HOM05D000101 ORTHO05D003282 7.0e-10 68.6 150 32.7
Gorai.006G231700 Gossypium raimondii HOM05D000101 ORTHO05D003282 1.2e-09 67.8 194 27.8
Rhsim11G0120300 Rhododendron simsii HOM05D000101 ORTHO05D003282 1.2e-09 67.8 195 27.7
Cfa026040 Carpinus fangiana HOM05D000101 ORTHO05D003282 1.6e-09 67.4 167 31.7
Eucgr.G00160 Eucalyptus grandis HOM05D000101 ORTHO05D003282 1.6e-09 67.4 201 27.9
QL10p054773 Quercus lobata HOM05D000101 ORTHO05D003282 2.0e-09 67.0 159 28.9
GSVIVG01023203001 Vitis vinifera HOM05D000101 ORTHO05D003282 2.0e-09 67.0 208 27.4
Lj5C583T4 Lonicera japonica HOM05D000101 ORTHO05D003282 2.7e-09 66.6 181 29.3
PGR042G3596 Punica granatum HOM05D000101 ORTHO05D003282 2.7e-09 66.6 175 30.3
QL02p102904 Quercus lobata HOM05D000101 ORTHO05D003282 2.7e-09 66.6 178 28.7
QL93p1902_0089 Quercus lobata HOM05D000101 ORTHO05D003282 2.7e-09 66.6 175 29.7
QL93p1902_0702 Quercus lobata HOM05D000101 ORTHO05D003282 3.5e-09 66.2 177 29.4
ATR0789G033 Amborella trichopoda HOM05D000101 ORTHO05D000089 4.5e-09 65.9 141 28.4
Eucgr.G00112 Eucalyptus grandis HOM05D000101 ORTHO05D003282 5.9e-09 65.5 179 29.1
Eucgr.H05045 Eucalyptus grandis HOM05D000101 ORTHO05D003282 5.9e-09 65.5 102 35.3
Gohir.D09G211900 Gossypium hirsutum HOM05D000101 ORTHO05D003282 5.9e-09 65.5 194 27.3
Haze_10012 Corylus avellana HOM05D000101 ORTHO05D003282 1.3e-08 64.3 166 29.5
Ciclev10024859m.g Citrus clementina HOM05D000101 ORTHO05D000089 2.3e-08 63.5 186 27.4
Eucgr.G00162 Eucalyptus grandis HOM05D000101 ORTHO05D003282 2.3e-08 63.5 79 36.7
ATR0037G006 Amborella trichopoda HOM05D000092 ORTHO05D000089 2.9e-08 63.2 178 28.1
ATR0618G196 Amborella trichopoda HOM05D000092 ORTHO05D000089 2.9e-08 63.2 175 30.3
AUR62018477 Chenopodium quinoa HOM05D000101 ORTHO05D003282 3.8e-08 62.8 150 26.0
vmacro01690 Vaccinium macrocarpon HOM05D000101 ORTHO05D003282 3.8e-08 62.8 77 42.9
Ah.13g077580 Amaranthus hybridus HOM05D000101 ORTHO05D003282 5.0e-08 62.4 157 26.8
arahy.Tifrunner.gnm1.ann1.65CWRI Arachis hypogaea HOM05D000101 ORTHO05D003282 5.0e-08 62.4 65 47.7
Eucgr.G00087 Eucalyptus grandis HOM05D000101 ORTHO05D003282 5.0e-08 62.4 179 27.4
Eucgr.H05030 Eucalyptus grandis HOM05D000101 ORTHO05D003282 5.0e-08 62.4 179 27.4
Hund03192 Selenicereus undatus HOM05D000101 ORTHO05D003282 5.0e-08 62.4 158 29.1
QL02p102693 Quercus lobata HOM05D000101 ORTHO05D003282 8.6e-08 61.6 201 28.9
RhsimUnG0201700 Rhododendron simsii HOM05D000101 ORTHO05D003282 8.6e-08 61.6 71 39.4
arahy.Tifrunner.gnm1.ann1.EZ6YKV Arachis hypogaea HOM05D000101 ORTHO05D003282 1.5e-07 60.8 59 49.2
Haze_10010 Corylus avellana HOM05D000101 ORTHO05D003282 1.5e-07 60.8 107 31.8
MBI12_g17628_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D003282 1.5e-07 60.8 153 32.0
AUR62020946 Chenopodium quinoa HOM05D000101 ORTHO05D003282 1.9e-07 60.5 150 25.3
Gohir.A09G213600 Gossypium hirsutum HOM05D000101 ORTHO05D003282 3.3e-07 59.7 154 25.3
BcaC07g41711 Brassica carinata HOM05D000101 ORTHO05D000089 5.6e-07 58.9 204 28.4
C08p47470 Brassica napus HOM05D000101 ORTHO05D000089 5.6e-07 58.9 204 28.4
BolC8t52288H Brassica oleracea HOM05D000101 ORTHO05D000089 5.6e-07 58.9 204 28.4
Hma1.2p1_2204F.1_g317110 Hydrangea macrophylla HOM05D000092 ORTHO05D000089 5.6e-07 58.9 79 41.8
GSVIVG01023173001 Vitis vinifera HOM05D000101 ORTHO05D002559 5.6e-07 58.9 49 49.0
Rhsim12G0032900 Rhododendron simsii HOM05D000101 ORTHO05D003282 7.3e-07 58.5 186 27.4
Prupe.3G054800 Prunus persica HOM05D000101 ORTHO05D000089 9.5e-07 58.2 191 25.1
Prupe.3G083200 Prunus persica HOM05D000101 ORTHO05D000089 9.5e-07 58.2 188 27.7
ATR1098G085 Amborella trichopoda HOM05D000092 ORTHO05D000089 1.2e-06 57.8 98 34.7
BcaC07g42571 Brassica carinata HOM05D000101 ORTHO05D000089 1.2e-06 57.8 189 28.6
Dinv05214 Davidia involucrata HOM05D000101 ORTHO05D000089 1.2e-06 57.8 183 32.2
BcaB04g20286 Brassica carinata HOM05D000101 ORTHO05D000089 1.6e-06 57.4 181 28.2
Hma1.2p1_2028F.1_g311690 Hydrangea macrophylla HOM05D000092 ORTHO05D000089 1.6e-06 57.4 150 31.3
TAR365G1237 Trochodendron aralioides HOM05D000101 ORTHO05D000089 1.6e-06 57.4 188 26.6
CANSAT56G2886 Cannabis sativa HOM05D000101 ORTHO05D000089 2.8e-06 56.6 181 28.7
Dinv21052 Davidia involucrata HOM05D000178 ORTHO05D003282 2.8e-06 56.6 180 28.3
Eucgr.G00248 Eucalyptus grandis HOM05D000101 ORTHO05D003282 3.6e-06 56.2 78 35.9
Eucgr.G00249 Eucalyptus grandis HOM05D000101 ORTHO05D003282 3.6e-06 56.2 182 24.7
MBI18_g26661_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 3.6e-06 56.2 164 27.4
MD09G1198800 Malus domestica HOM05D000101 ORTHO05D000089 3.6e-06 56.2 191 26.2
Prupe.3G080800 Prunus persica HOM05D000101 ORTHO05D000089 3.6e-06 56.2 188 27.7
QL08p013403 Quercus lobata HOM05D000101 ORTHO05D000089 4.7e-06 55.8 221 27.6
Rhsim12G0032200 Rhododendron simsii HOM05D000101 ORTHO05D003282 4.7e-06 55.8 187 27.8
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 6.1e-06 55.5 174 30.5
TWI38G0290 Tripterygium wilfordii HOM05D000092 ORTHO05D000089 6.1e-06 55.5 155 29.7
Dinv31613 Davidia involucrata HOM05D000101 ORTHO05D003282 8.0e-06 55.1 83 36.1
MBI18_g24213_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 8.0e-06 55.1 173 28.9
Rhsim12G0034700 Rhododendron simsii HOM05D000101 ORTHO05D003282 8.0e-06 55.1 186 26.3
RcHm_v2.0_Chr2g0136891 Rosa chinensis HOM05D000101 ORTHO05D000089 8.0e-06 55.1 190 23.7
vmacro00949 Vaccinium macrocarpon HOM05D000101 ORTHO05D000089 8.0e-06 55.1 156 27.6
GSVIVG01014596001 Vitis vinifera HOM05D000101 ORTHO05D000089 8.0e-06 55.1 188 25.5


User provided reference genes

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