Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P329T13 Lonicera japonica HOM05D000007 ORTHO05D000039 1.7e-56 222.2 99 100.0
Lj5C331T19 Lonicera japonica HOM05D000007 ORTHO05D000039 3.3e-23 111.7 98 52.0
Dinv24454 Davidia involucrata HOM05D000007 ORTHO05D000039 1.2e-14 83.2 83 48.2
vmacro19864 Vaccinium macrocarpon HOM05D001759 ORTHO05D000039 1.1e-13 80.1 80 47.5
Dinv24453 Davidia involucrata HOM05D000007 ORTHO05D000039 4.0e-13 78.2 83 44.6
Lsat_1_v5_gn_7_77020 Lactuca sativa HOM05D000007 ORTHO05D000039 2.9e-11 72.0 85 40.0
Prupe.3G013500 Prunus persica HOM05D000007 ORTHO05D000039 8.3e-11 70.5 76 46.1
HanXRQChr01g0013981 Helianthus annuus HOM05D000007 ORTHO05D000039 1.1e-10 70.1 70 41.4
Eucgr.I00068 Eucalyptus grandis HOM05D000007 ORTHO05D000039 5.4e-10 67.8 78 42.3
Eucgr.I00162 Eucalyptus grandis HOM05D000007 ORTHO05D000039 7.1e-10 67.4 96 37.5
QL07p003276 Quercus lobata HOM05D000007 ORTHO05D000039 3.5e-09 65.1 72 52.8
Eucgr.E02768 Eucalyptus grandis HOM05D000007 ORTHO05D000039 6.0e-09 64.3 90 35.6
Eucgr.E04352 Eucalyptus grandis HOM05D000007 ORTHO05D000039 6.0e-09 64.3 90 35.6
Eucgr.I00116 Eucalyptus grandis HOM05D000007 ORTHO05D000039 7.8e-09 63.9 69 40.6
DCAR_012129 Daucus carota HOM05D000007 ORTHO05D000039 1.0e-08 63.5 73 37.0
DCAR_012130 Daucus carota HOM05D000007 ORTHO05D000039 1.0e-08 63.5 73 37.0
Eucgr.D00965 Eucalyptus grandis HOM05D000007 ORTHO05D000039 1.0e-08 63.5 70 44.3
Dinv18727 Davidia involucrata HOM05D000007 ORTHO05D000039 1.3e-08 63.2 93 36.6
Eucgr.I00066 Eucalyptus grandis HOM05D000007 ORTHO05D000039 1.3e-08 63.2 69 39.1
DCAR_005424 Daucus carota HOM05D000007 ORTHO05D000039 1.7e-08 62.8 74 41.9
PSO500G0084 Papaver somniferum HOM05D000007 ORTHO05D000676 1.7e-08 62.8 89 34.8
Ciclev10028237m.g Citrus clementina HOM05D000007 ORTHO05D000039 2.3e-08 62.4 72 36.1
Lj1C663T1 Lonicera japonica HOM05D000007 ORTHO05D000039 2.3e-08 62.4 78 38.5
Atru.chr5.2749 Acer truncatum HOM05D000007 ORTHO05D000039 3.0e-08 62.0 82 36.6
Eucgr.F02950 Eucalyptus grandis HOM05D000007 ORTHO05D000039 3.0e-08 62.0 70 42.9
Eucgr.I00070 Eucalyptus grandis HOM05D000007 ORTHO05D000039 3.0e-08 62.0 69 43.5
Eucgr.I00151 Eucalyptus grandis HOM05D000007 ORTHO05D000039 3.0e-08 62.0 71 38.0
Lj1C663T2 Lonicera japonica HOM05D000007 ORTHO05D000039 3.0e-08 62.0 71 40.8
Lj1P665T26 Lonicera japonica HOM05D000007 ORTHO05D000039 3.0e-08 62.0 73 42.5
QL02p078646 Quercus lobata HOM05D000007 ORTHO05D000039 3.9e-08 61.6 83 38.6
Eucgr.I00146 Eucalyptus grandis HOM05D000007 ORTHO05D000039 5.1e-08 61.2 69 40.6
Eucgr.I00164 Eucalyptus grandis HOM05D000007 ORTHO05D000039 5.1e-08 61.2 70 45.7
QL11p051041 Quercus lobata HOM05D000007 ORTHO05D000039 5.1e-08 61.2 83 41.0
Dinv24460 Davidia involucrata HOM05D000007 ORTHO05D000039 6.6e-08 60.8 81 37.0
Eucgr.I00156 Eucalyptus grandis HOM05D000007 ORTHO05D000039 6.6e-08 60.8 69 40.6
Hma1.2p1_0901F.1_g234670 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 6.6e-08 60.8 92 37.0
Hma1.2p1_0901F.1_g234685 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 6.6e-08 60.8 92 37.0
Hma1.2p1_1150F.1_g261840 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 6.6e-08 60.8 92 37.0
Prupe.3G047400 Prunus persica HOM05D000007 ORTHO05D000039 6.6e-08 60.8 74 43.2
QL02p081858 Quercus lobata HOM05D000007 ORTHO05D000039 6.6e-08 60.8 80 38.8
CAN.G1437.10 Capsicum annuum HOM05D000007 ORTHO05D000017 8.6e-08 60.5 79 38.0
Dinv23704 Davidia involucrata HOM05D000007 ORTHO05D000039 8.6e-08 60.5 78 41.0
Eucgr.I00160 Eucalyptus grandis HOM05D000007 ORTHO05D000039 8.6e-08 60.5 82 36.6
QL08p019850 Quercus lobata HOM05D000007 ORTHO05D000039 8.6e-08 60.5 78 44.9
Atru.chr1.1381 Acer truncatum HOM05D000007 ORTHO05D000039 1.1e-07 60.1 70 41.4
CSS0017530 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 1.1e-07 60.1 83 36.1
Dinv12703 Davidia involucrata HOM05D000007 ORTHO05D000039 1.1e-07 60.1 72 38.9
Lj1P794T16 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-07 60.1 73 42.5
RcHm_v2.0_Chr1g0344471 Rosa chinensis HOM05D000007 ORTHO05D000039 1.1e-07 60.1 74 39.2
SGA_v2.0_scaffold90G27929 Striga asiatica HOM05D012724 ORTHO05D010595 1.1e-07 60.1 79 39.2
Nitab4.5_0000069g0450 Nicotiana tabacum HOM05D000007 ORTHO05D018881 1.5e-07 59.7 81 39.5
Ah.10g026190 Amaranthus hybridus HOM05D000007 ORTHO05D000039 1.9e-07 59.3 79 40.5
Haze_13248 Corylus avellana HOM05D000029 ORTHO05D001395 1.9e-07 59.3 72 38.9
Eucgr.I00158 Eucalyptus grandis HOM05D000007 ORTHO05D000039 1.9e-07 59.3 80 37.5
Nitab4.5_0002027g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000039 1.9e-07 59.3 78 35.9
PSO017G5915 Papaver somniferum HOM05D000007 ORTHO05D000676 1.9e-07 59.3 73 41.1
Sed0017057 Sechium edule HOM05D000007 ORTHO05D000039 1.9e-07 59.3 79 36.7
Dinv15480 Davidia involucrata HOM05D000007 ORTHO05D000039 2.5e-07 58.9 78 42.3
Lj3C598T4 Lonicera japonica HOM05D000007 ORTHO05D000017 2.5e-07 58.9 75 38.7
PSO675G3185 Papaver somniferum HOM05D000007 ORTHO05D000676 2.5e-07 58.9 75 38.7
Rhsim09G0013900 Rhododendron simsii HOM05D000007 ORTHO05D000039 2.5e-07 58.9 72 44.4
Actinidia07889 Actinidia chinensis HOM05D000007 ORTHO05D000039 3.3e-07 58.5 77 35.1
Ciclev10003515m.g Citrus clementina HOM05D000007 ORTHO05D000039 3.3e-07 58.5 76 34.2
Lj8C20T2 Lonicera japonica HOM05D000007 ORTHO05D000039 3.3e-07 58.5 71 43.7
Nitab4.5_0007022g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000039 3.3e-07 58.5 73 38.4
PSO801G0842 Papaver somniferum HOM05D000007 ORTHO05D000676 3.3e-07 58.5 86 36.0
Eucgr.D00967 Eucalyptus grandis HOM05D000007 ORTHO05D000039 4.3e-07 58.2 70 41.4
HanXRQChr16g0516771 Helianthus annuus HOM05D000007 ORTHO05D000039 4.3e-07 58.2 90 41.1
PSO478G3961 Papaver somniferum HOM05D000007 ORTHO05D000676 4.3e-07 58.2 73 39.7
QL04p067441 Quercus lobata HOM05D000007 ORTHO05D000039 4.3e-07 58.2 84 36.9
QL04p067556 Quercus lobata HOM05D000007 ORTHO05D000039 4.3e-07 58.2 84 36.9
QL07p035948 Quercus lobata HOM05D000007 ORTHO05D000039 4.3e-07 58.2 74 41.9
QL11p003899 Quercus lobata HOM05D000007 ORTHO05D000039 4.3e-07 58.2 76 40.8
Aqoxy1G02131 Aquilegia oxysepala HOM05D000007 ORTHO05D000039 5.6e-07 57.8 75 41.3
Cpa.g.sc791.2 Carica papaya HOM05D000007 ORTHO05D000039 5.6e-07 57.8 75 34.7
AUR62008140 Chenopodium quinoa HOM05D000544 ORTHO05D030992 5.6e-07 57.8 84 38.1
Cc03_g07520 Coffea canephora HOM05D000007 ORTHO05D000017 5.6e-07 57.8 76 36.8
Lj2C804T5 Lonicera japonica HOM05D000007 ORTHO05D000039 5.6e-07 57.8 81 38.3
MD17G1227400 Malus domestica HOM05D000007 ORTHO05D000039 5.6e-07 57.8 77 35.1
Prupe.3G013300 Prunus persica HOM05D000007 ORTHO05D000039 5.6e-07 57.8 88 36.4
Prupe.3G110600 Prunus persica HOM05D000007 ORTHO05D000039 5.6e-07 57.8 86 36.0
Haze_13252 Corylus avellana HOM05D000007 ORTHO05D000039 7.3e-07 57.4 72 37.5
CsaV3_6G037500 Cucumis sativus L. HOM05D000007 ORTHO05D000039 7.3e-07 57.4 93 34.4
Lj1P664T31 Lonicera japonica HOM05D000007 ORTHO05D000039 7.3e-07 57.4 76 35.5
Lj2C804T8 Lonicera japonica HOM05D000007 ORTHO05D000039 7.3e-07 57.4 81 38.3
Nitab4.5_0004039g0010 Nicotiana tabacum HOM05D000007 ORTHO05D018881 7.3e-07 57.4 81 38.3
Oeu025158.1 Olea europaea HOM05D000007 ORTHO05D000039 7.3e-07 57.4 71 42.3
PSO151G0005 Papaver somniferum HOM05D000007 ORTHO05D000676 7.3e-07 57.4 80 42.5
PSO801G0590 Papaver somniferum HOM05D000007 ORTHO05D000676 7.3e-07 57.4 75 38.7
Potri.001G262900 Populus trichocarpa HOM05D000007 ORTHO05D000039 7.3e-07 57.4 71 36.6
AUR62028722 Chenopodium quinoa HOM05D000544 ORTHO05D030992 9.5e-07 57.0 84 36.9
Ca_16861_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 9.5e-07 57.0 79 36.7
Ciclev10011921m.g Citrus clementina HOM05D000007 ORTHO05D000039 9.5e-07 57.0 79 35.4
Dinv07007 Davidia involucrata HOM05D000007 ORTHO05D000039 9.5e-07 57.0 88 30.7
Nitab4.5_0004937g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000039 9.5e-07 57.0 73 39.7
Oeu025157.1 Olea europaea HOM05D000007 ORTHO05D000039 9.5e-07 57.0 71 42.3
PSO210G1380 Papaver somniferum HOM05D000007 ORTHO05D000676 9.5e-07 57.0 84 39.3
Actinidia06940 Actinidia chinensis HOM05D003981 ORTHO05D003666 1.2e-06 56.6 80 36.2
Actinidia10112 Actinidia chinensis HOM05D000007 ORTHO05D000039 1.2e-06 56.6 90 37.8
Aqoxy5G04199 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 1.2e-06 56.6 73 37.0
CANSAT64G2524 Cannabis sativa HOM05D000007 ORTHO05D000039 1.2e-06 56.6 79 36.7
Haze_10195 Corylus avellana HOM05D000007 ORTHO05D000039 1.2e-06 56.6 74 40.5
Lsat_1_v5_gn_8_22121 Lactuca sativa HOM05D000007 ORTHO05D000039 1.2e-06 56.6 86 38.4
Lj1C674T8 Lonicera japonica HOM05D000007 ORTHO05D000039 1.2e-06 56.6 84 39.3
Nitab4.5_0002978g0130 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.2e-06 56.6 73 38.4
PSO675G0641 Papaver somniferum HOM05D000007 ORTHO05D000676 1.2e-06 56.6 82 36.6
PSO675G4194 Papaver somniferum HOM05D000007 ORTHO05D000676 1.2e-06 56.6 84 34.5
PSO801G0352 Papaver somniferum HOM05D000007 ORTHO05D000676 1.2e-06 56.6 75 41.3
Haze_05766 Corylus avellana HOM05D000007 ORTHO05D000039 1.6e-06 56.2 87 34.5
Haze_13298 Corylus avellana HOM05D000007 ORTHO05D000039 1.6e-06 56.2 74 35.1
Dinv07005 Davidia involucrata HOM05D000007 ORTHO05D000039 1.6e-06 56.2 82 34.1
ECA240G2663 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.6e-06 56.2 67 40.3
Lj2C989T3 Lonicera japonica HOM05D000007 ORTHO05D000039 1.6e-06 56.2 74 39.2
Lj2C989T8 Lonicera japonica HOM05D000007 ORTHO05D000039 1.6e-06 56.2 74 39.2
MD12G1050800 Malus domestica HOM05D000007 ORTHO05D000039 1.6e-06 56.2 77 36.4
MD17G1230300 Malus domestica HOM05D000007 ORTHO05D000039 1.6e-06 56.2 76 38.2
GSVIVG01013506001 Vitis vinifera HOM05D000007 ORTHO05D000039 1.6e-06 56.2 71 39.4
Aqoxy5G03340 Aquilegia oxysepala HOM05D000007 ORTHO05D000676 2.1e-06 55.8 84 34.5
Haze_10194 Corylus avellana HOM05D000007 ORTHO05D000039 2.1e-06 55.8 73 38.4
Haze_10234 Corylus avellana HOM05D000007 ORTHO05D000039 2.1e-06 55.8 72 40.3
Dinv21276 Davidia involucrata HOM05D000007 ORTHO05D000039 2.1e-06 55.8 73 37.0
Dinv41267 Davidia involucrata HOM05D000007 ORTHO05D000039 2.1e-06 55.8 74 33.8
FAN23G1318 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.1e-06 55.8 81 37.0
Lj5P299T4 Lonicera japonica HOM05D000007 ORTHO05D000039 2.1e-06 55.8 81 35.8
MD09G1281100 Malus domestica HOM05D000007 ORTHO05D000039 2.1e-06 55.8 80 37.5
PSO339G5111 Papaver somniferum HOM05D000007 ORTHO05D000676 2.1e-06 55.8 77 36.4
PSO761G0457 Papaver somniferum HOM05D000007 ORTHO05D000676 2.1e-06 55.8 74 35.1
Peaxi162Scf01162g00033 Petunia axillaris HOM05D000007 ORTHO05D000039 2.1e-06 55.8 90 37.8
Prupe.1G188300 Prunus persica HOM05D000007 ORTHO05D000039 2.1e-06 55.8 83 41.0
QL04p045563 Quercus lobata HOM05D000007 ORTHO05D000039 2.1e-06 55.8 82 35.4
FvH4_3g19151 Fragaria vesca HOM05D000007 ORTHO05D000017 2.8e-06 55.5 71 32.4
FAN11G0276 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.8e-06 55.5 71 32.4
MD09G1119500 Malus domestica HOM05D000007 ORTHO05D000521 2.8e-06 55.5 77 35.1
Nitab4.5_0000676g0280 Nicotiana tabacum HOM05D007349 ORTHO05D009317 2.8e-06 55.5 80 37.5
PSO541G3012 Papaver somniferum HOM05D000007 ORTHO05D000017 2.8e-06 55.5 75 40.0
QL07p003229 Quercus lobata HOM05D000007 ORTHO05D000039 2.8e-06 55.5 80 36.2
QL07p009225 Quercus lobata HOM05D000007 ORTHO05D000039 2.8e-06 55.5 96 36.5
QL07p009457 Quercus lobata HOM05D000007 ORTHO05D000039 2.8e-06 55.5 96 36.5
SGA_v2.0_scaffold90G27930 Striga asiatica HOM05D012724 ORTHO05D010595 2.8e-06 55.5 76 39.5
Ciclev10033971m.g Citrus clementina HOM05D000007 ORTHO05D000017 3.6e-06 55.1 73 37.0
COL.COLO4_11920 Corchorus olitorius HOM05D000007 ORTHO05D000039 3.6e-06 55.1 82 39.0
Haze_06943 Corylus avellana HOM05D000007 ORTHO05D000017 3.6e-06 55.1 89 33.7
FvH4_7g08973 Fragaria vesca HOM05D000007 ORTHO05D000039 3.6e-06 55.1 78 37.2
Lj3C655T7 Lonicera japonica HOM05D000007 ORTHO05D000017 3.6e-06 55.1 90 31.1
PSO782G3125 Papaver somniferum HOM05D000007 ORTHO05D000676 3.6e-06 55.1 83 33.7
QL07p003552 Quercus lobata HOM05D000007 ORTHO05D000039 3.6e-06 55.1 75 40.0
Rhsim04G0080900 Rhododendron simsii HOM05D000007 ORTHO05D000039 3.6e-06 55.1 76 39.5
Sopen03g024680 Solanum pennellii HOM05D000007 ORTHO05D000017 3.6e-06 55.1 81 34.6
Migut.H02131 Erythranthe guttata HOM05D000007 ORTHO05D000039 4.7e-06 54.7 81 37.0
Lj1A671T54 Lonicera japonica HOM05D000007 ORTHO05D000039 4.7e-06 54.7 78 33.3
Lalb_Chr02g0151161 Lupinus albus HOM05D000007 ORTHO05D000039 4.7e-06 54.7 88 37.5
Manes.03G115800 Manihot esculenta HOM05D000007 ORTHO05D000039 4.7e-06 54.7 73 38.4
Prupe.3G110000 Prunus persica HOM05D000007 ORTHO05D000039 4.7e-06 54.7 74 33.8
Prupe.3G110400 Prunus persica HOM05D000007 ORTHO05D000039 4.7e-06 54.7 86 33.7
QL04p045477 Quercus lobata HOM05D000007 ORTHO05D000039 4.7e-06 54.7 85 31.8
Aqoxy1G02132 Aquilegia oxysepala HOM05D000007 ORTHO05D000039 6.2e-06 54.3 75 40.0
CANSAT64G0237 Cannabis sativa HOM05D000007 ORTHO05D000039 6.2e-06 54.3 75 41.3
Cfa007606 Carpinus fangiana HOM05D000007 ORTHO05D000039 6.2e-06 54.3 87 37.9
Cfa014275 Carpinus fangiana HOM05D000007 ORTHO05D000521 6.2e-06 54.3 81 34.6
DCAR_019197 Daucus carota HOM05D000007 ORTHO05D000039 6.2e-06 54.3 81 34.6
Dinv07009 Davidia involucrata HOM05D000007 ORTHO05D000039 6.2e-06 54.3 82 32.9
Dinv07011 Davidia involucrata HOM05D000007 ORTHO05D000039 6.2e-06 54.3 82 32.9
FAN14G3392 Fragaria x ananassa HOM05D000007 ORTHO05D005026 6.2e-06 54.3 84 33.3
Lj1P665T16 Lonicera japonica HOM05D000007 ORTHO05D000039 6.2e-06 54.3 79 39.2
PSO541G3268 Papaver somniferum HOM05D000007 ORTHO05D000676 6.2e-06 54.3 84 32.1
Peaxi162Scf00469g00073 Petunia axillaris HOM05D000007 ORTHO05D000039 6.2e-06 54.3 72 37.5
QL04p036929 Quercus lobata HOM05D000007 ORTHO05D000039 6.2e-06 54.3 86 31.4
QL11p003050 Quercus lobata HOM05D000007 ORTHO05D000039 6.2e-06 54.3 78 39.7
CSS0023358 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 8.1e-06 53.9 75 38.7
CSS0036134 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 8.1e-06 53.9 75 38.7
Cc02_g08310 Coffea canephora HOM05D000007 ORTHO05D000039 8.1e-06 53.9 78 32.1
Haze_13253 Corylus avellana HOM05D000007 ORTHO05D000039 8.1e-06 53.9 73 37.0
Migut.N00935 Erythranthe guttata HOM05D000007 ORTHO05D000039 8.1e-06 53.9 75 37.3
HanXRQChr16g0517021 Helianthus annuus HOM05D000007 ORTHO05D000039 8.1e-06 53.9 80 40.0
Lj1P670T24 Lonicera japonica HOM05D000007 ORTHO05D000039 8.1e-06 53.9 79 35.4
Lj1P672T29 Lonicera japonica HOM05D000007 ORTHO05D000039 8.1e-06 53.9 77 35.1
Lj3C654G5 Lonicera japonica HOM05D000007 ORTHO05D000017 8.1e-06 53.9 82 34.1
Manes.07G068800 Manihot esculenta HOM05D000007 ORTHO05D000039 8.1e-06 53.9 75 37.3
PSO339G0853 Papaver somniferum HOM05D000007 ORTHO05D000676 8.1e-06 53.9 80 37.5
QL11p051030 Quercus lobata HOM05D000007 ORTHO05D000039 8.1e-06 53.9 73 41.1


User provided reference genes

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