Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 1.2e-87 326.6 178 100.0
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 1.9e-29 133.3 98 71.4
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 5.1e-27 125.2 94 70.2
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 2.0e-23 113.2 100 63.0
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 1.1e-21 107.5 88 67.0
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 7.9e-20 101.3 103 55.3
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 8.8e-19 97.8 101 57.4
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 2.0e-18 96.7 108 52.8
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 3.3e-18 95.9 108 54.6
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 4.4e-18 95.5 92 56.5
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 4.4e-18 95.5 86 62.8
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 5.7e-18 95.1 93 55.9
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 7.4e-18 94.7 106 52.8
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 9.7e-18 94.4 77 66.2
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 9.7e-18 94.4 108 50.9
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 1.3e-17 94.0 88 54.5
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 2.2e-17 93.2 87 62.1
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 6.3e-17 91.7 104 52.9
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 8.2e-17 91.3 92 54.3
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 3.1e-16 89.4 86 57.0
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 4.1e-16 89.0 86 57.0
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 4.1e-16 89.0 100 52.0
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 6.9e-16 88.2 113 43.4
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 1.5e-15 87.0 86 57.0
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 2.0e-15 86.7 73 60.3
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 2.6e-15 86.3 92 55.4
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 2.6e-15 86.3 112 50.9
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 4.5e-15 85.5 86 57.0
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 7.7e-15 84.7 103 53.4
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 1.0e-14 84.3 90 53.3
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 2.2e-14 83.2 106 52.8
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 2.9e-14 82.8 93 55.9
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 8.5e-14 81.3 106 50.0
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 1.1e-13 80.9 108 44.4
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 1.1e-13 80.9 103 50.5
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 1.1e-13 80.9 86 55.8
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.4e-13 80.5 86 54.7
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 1.9e-13 80.1 106 46.2
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 3.2e-13 79.3 92 50.0
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 7.2e-13 78.2 99 46.5
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 7.2e-13 78.2 113 42.5
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 1.6e-12 77.0 107 43.9
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.1e-12 76.6 53 73.6
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 2.7e-12 76.3 77 53.2
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 3.6e-12 75.9 108 44.4
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 4.7e-12 75.5 70 57.1
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 1.0e-11 74.3 84 50.0
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 1.4e-11 73.9 88 50.0
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 2.3e-11 73.2 106 48.1
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 2.3e-11 73.2 62 64.5
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 3.0e-11 72.8 88 45.5
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 3.9e-11 72.4 106 46.2
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.1e-10 70.9 86 48.8
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.1e-10 70.9 86 48.8
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.1e-10 70.9 86 48.8
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 2.6e-10 69.7 59 61.0
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 4.4e-10 68.9 76 51.3
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 5.7e-10 68.6 102 47.1
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 7.4e-10 68.2 48 64.6
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.3e-09 67.4 55 60.0
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 1.3e-09 67.4 104 44.2
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 1.3e-09 67.4 83 51.8
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 1.7e-09 67.0 108 44.4
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.7e-09 67.0 76 51.3
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 2.2e-09 66.6 85 47.1
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 2.8e-09 66.2 92 44.6
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 2.8e-09 66.2 73 54.8
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 4.8e-09 65.5 89 44.9
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 6.3e-09 65.1 87 48.3
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 8.2e-09 64.7 76 48.7
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 8.2e-09 64.7 76 48.7
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 8.2e-09 64.7 76 48.7
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 1.1e-08 64.3 70 51.4
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 1.1e-08 64.3 128 39.1
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 1.4e-08 63.9 90 43.3
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 1.4e-08 63.9 107 45.8
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 1.8e-08 63.5 82 48.8
Oeu006910.1 Olea europaea HOM05D007325 ORTHO05D009251 3.1e-08 62.8 89 48.3
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 9.1e-08 61.2 73 50.7
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 1.2e-07 60.8 96 45.8
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 1.2e-07 60.8 76 48.7
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 1.2e-07 60.8 74 48.6
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 3.5e-07 59.3 76 47.4
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 4.5e-07 58.9 81 49.4
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 5.9e-07 58.5 76 47.4
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 5.9e-07 58.5 76 47.4
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 5.9e-07 58.5 76 47.4
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 7.7e-07 58.2 48 56.2
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 7.7e-07 58.2 82 47.6
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.0e-06 57.8 66 47.0
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 1.0e-06 57.8 82 46.3
Sed0022272 Sechium edule HOM05D007325 ORTHO05D009251 1.0e-06 57.8 78 47.4
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 2.2e-06 56.6 70 47.1
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 3.8e-06 55.8 93 40.9
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 8.5e-06 54.7 94 43.6
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 8.5e-06 54.7 80 45.0


User provided reference genes

Program Settings