Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P261T19 Lonicera japonica HOM05D000350 ORTHO05D000228 5.2e-126 454.5 251 100.0
CSS0019031 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 2.9e-76 289.3 250 73.2
Thecc.02G025500 Theobroma cacao HOM05D000350 ORTHO05D000228 3.3e-64 249.2 246 59.3
Dinv01846 Davidia involucrata HOM05D000350 ORTHO05D000228 5.7e-64 248.4 252 62.3
COL.COLO4_17758 Corchorus olitorius HOM05D000350 ORTHO05D000228 8.2e-63 244.6 244 59.0
Dinv19395 Davidia involucrata HOM05D000350 ORTHO05D000228 1.2e-61 240.7 238 65.5
Duzib132G0811 Durio zibethinus HOM05D000350 ORTHO05D000228 4.5e-61 238.8 236 58.9
Duzib248G0668 Durio zibethinus HOM05D000350 ORTHO05D000228 1.0e-60 237.7 240 58.8
Nitab4.5_0000948g0150 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.1e-59 234.2 243 63.0
Nitab4.5_0007913g0020 Nicotiana tabacum HOM05D000350 ORTHO05D000228 2.5e-59 233.0 244 58.2
Lsat_1_v5_gn_5_103680 Lactuca sativa HOM05D000350 ORTHO05D000228 3.2e-59 232.6 237 57.8
PGSC0003DMG400024928 Solanum tuberosum HOM05D000350 ORTHO05D000228 5.5e-59 231.9 230 58.3
Actinidia39014 Actinidia chinensis HOM05D000350 ORTHO05D000228 1.6e-58 230.3 257 57.6
CSS0012847 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 1.6e-58 230.3 242 56.2
Haze_01821 Corylus avellana HOM05D000350 ORTHO05D000228 1.6e-58 230.3 217 63.6
Hma1.2p1_1108F.1_g257880 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 2.1e-58 229.9 258 57.4
CiPaw.06G143600 Carya illinoinensis HOM05D000350 ORTHO05D000228 1.5e-56 223.8 242 56.6
Prupe.1G576500 Prunus persica HOM05D000350 ORTHO05D000228 2.0e-56 223.4 239 61.9
Cfa005483 Carpinus fangiana HOM05D000350 ORTHO05D000228 3.3e-56 222.6 214 63.1
Gohir.A01G182200 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.3e-56 222.2 256 55.9
Gorai.002G215000 Gossypium raimondii HOM05D000350 ORTHO05D000228 4.3e-56 222.2 256 55.9
Actinidia00187 Actinidia chinensis HOM05D000350 ORTHO05D000228 7.4e-56 221.5 246 62.2
DCAR_006683 Daucus carota HOM05D000350 ORTHO05D000228 1.3e-55 220.7 262 55.7
Oeu000125.1 Olea europaea HOM05D000350 ORTHO05D000228 1.3e-55 220.7 221 57.9
Gohir.D01G173300 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.4e-54 217.2 255 55.3
CAN.G798.44 Capsicum annuum HOM05D000350 ORTHO05D000228 2.6e-53 213.0 221 57.9
QL02p099882 Quercus lobata HOM05D000350 ORTHO05D000228 1.0e-52 211.1 244 56.6
Gohir.A04G130000 Gossypium hirsutum HOM05D000350 ORTHO05D000228 5.0e-52 208.8 246 53.7
Cc02_g22960 Coffea canephora HOM05D000350 ORTHO05D000228 1.1e-51 207.6 257 56.4
TWI59G0579 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 1.1e-51 207.6 244 59.0
MD15G1431700 Malus domestica HOM05D000350 ORTHO05D000228 4.2e-51 205.7 248 55.2
Cpa.g.sc30.48 Carica papaya HOM05D000350 ORTHO05D000228 1.6e-50 203.8 238 54.2
Gorai.012G166500 Gossypium raimondii HOM05D000350 ORTHO05D000228 1.6e-50 203.8 221 55.7
HanXRQChr10g0294511 Helianthus annuus HOM05D000350 ORTHO05D000228 6.1e-50 201.8 217 57.1
Manes.10G120400 Manihot esculenta HOM05D000350 ORTHO05D000228 6.1e-50 201.8 250 54.4
Sopen01g046180 Solanum pennellii HOM05D000350 ORTHO05D000228 6.1e-50 201.8 236 55.9
TAR381G1380 Trochodendron aralioides HOM05D000350 ORTHO05D000228 1.0e-49 201.1 240 54.2
Rhsim11G0125700 Rhododendron simsii HOM05D000350 ORTHO05D000228 1.8e-49 200.3 219 59.8
MD08G1240000 Malus domestica HOM05D000350 ORTHO05D000228 2.3e-49 199.9 216 56.5
CiPaw.05G051300 Carya illinoinensis HOM05D000350 ORTHO05D000228 2.6e-48 196.4 256 55.5
Gohir.D04G175200 Gossypium hirsutum HOM05D000350 ORTHO05D000228 3.3e-48 196.1 221 54.8
Oeu036680.2 Olea europaea HOM05D000350 ORTHO05D000228 5.7e-48 195.3 213 55.4
Sabra01G0168200 Salix brachista HOM05D000350 ORTHO05D000228 9.7e-48 194.5 276 52.5
TWI23G1234 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 1.2e-45 187.6 232 53.4
Manes.07G022400 Manihot esculenta HOM05D000350 ORTHO05D000228 5.9e-45 185.3 199 53.8
Potri.004G222100 Populus trichocarpa HOM05D000350 ORTHO05D000228 5.9e-45 185.3 268 50.4
TWI14G0578 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 8.5e-44 181.4 231 51.9
MSTRG.16500 Avicennia marina HOM05D000350 ORTHO05D000228 1.9e-43 180.3 228 53.9
MSTRG.16501 Avicennia marina HOM05D000350 ORTHO05D000228 1.9e-43 180.3 228 53.9
Sed0024468 Sechium edule HOM05D000350 ORTHO05D000228 3.6e-42 176.0 200 58.0
Atru.chr6.722 Acer truncatum HOM05D000350 ORTHO05D000228 6.1e-42 175.3 204 59.3
Atru.chr6.728 Acer truncatum HOM05D000350 ORTHO05D000228 6.1e-42 175.3 204 59.3
Nn5g27611 Nelumbo nucifera HOM05D000350 ORTHO05D000228 6.3e-39 165.2 273 45.1
Migut.B00803 Erythranthe guttata HOM05D000350 ORTHO05D000228 1.1e-38 164.5 213 49.8
MSTRG.5217 Avicennia marina HOM05D000350 ORTHO05D000228 5.3e-38 162.2 236 47.9
CDE08G0860 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 9.1e-38 161.4 254 45.7
TAR624G0184 Trochodendron aralioides HOM05D000350 ORTHO05D000228 1.2e-37 161.0 163 58.3
CDE06G0139 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 1.6e-37 160.6 230 49.6
CANSAT54G2211 Cannabis sativa HOM05D000350 ORTHO05D000228 3.8e-36 156.0 192 54.2
ECA234G4001 Erigeron canadensis HOM05D000350 ORTHO05D000228 1.2e-34 151.0 251 50.2
VMungo0540G0398 Vigna mungo HOM05D000350 ORTHO05D000228 1.2e-34 151.0 217 47.5
Phvul.006G217800 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 1.8e-33 147.1 215 47.4
Lj6g0006864 Lotus japonicus HOM05D000350 ORTHO05D000228 4.0e-33 146.0 202 48.0
Glyma.16G004300 Glycine max HOM05D000350 ORTHO05D000228 1.2e-32 144.4 238 47.9
ClCG11G013380 Citrullus lanatus HOM05D000350 ORTHO05D000228 5.7e-32 142.1 231 45.5
arahy.Tifrunner.gnm1.ann1.22FU97 Arachis hypogaea HOM05D000350 ORTHO05D000228 7.5e-32 141.7 239 43.9
arahy.Tifrunner.gnm1.ann1.ABQ1RQ Arachis hypogaea HOM05D000350 ORTHO05D000228 4.1e-30 136.0 239 41.0
Lalb_Chr20g0123661 Lupinus albus HOM05D000350 ORTHO05D000228 8.5e-28 128.3 235 38.3
Peaxi162Scf00011g00819 Petunia axillaris HOM05D000350 ORTHO05D000228 8.5e-28 128.3 164 53.7
MBI17_g09748_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 9.4e-27 124.8 241 40.2
Ciclev10000702m.g Citrus clementina HOM05D000350 ORTHO05D000228 1.6e-26 124.0 188 54.8
CsaV3_5G029900 Cucumis sativus L. HOM05D000350 ORTHO05D000228 2.1e-26 123.6 238 41.2
DCAR_025352 Daucus carota HOM05D000350 ORTHO05D000228 3.0e-25 119.8 226 42.0
HPP92_004434 Vanilla planifolia HOM05D000350 ORTHO05D000228 5.2e-25 119.0 213 40.8
HPP92_027800 Vanilla planifolia HOM05D000350 ORTHO05D000228 8.8e-25 118.2 213 40.8
Dinv15058 Davidia involucrata HOM05D000350 ORTHO05D000228 2.0e-24 117.1 205 41.5
Glyma.12G168300 Glycine max HOM05D000350 ORTHO05D000228 5.7e-24 115.5 229 42.8
MBI17_g44301_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 9.8e-24 114.8 143 50.3
SEGI_38392 Sequoiadendron giganteum HOM05D000350 ORTHO05D000228 9.8e-24 114.8 243 38.7
unitig_578.g16347 Utricularia gibba HOM05D000350 ORTHO05D000228 1.3e-23 114.4 214 39.3
Solyc01g103780.4 Solanum lycopersicum HOM05D000350 ORTHO05D000228 3.1e-22 109.8 150 50.0
MELO3C011835.2 Cucumis melo HOM05D000350 ORTHO05D000228 7.0e-22 108.6 225 39.6
Psat1g221880 Pisum sativum HOM05D000350 ORTHO05D000228 1.6e-21 107.5 226 38.9
Medtr2g006150 Medicago truncatula HOM05D000350 ORTHO05D000228 3.5e-21 106.3 223 37.7
ATR0584G103 Amborella trichopoda HOM05D000350 ORTHO05D000228 7.7e-21 105.1 239 37.2
Cc00_g06580 Coffea canephora HOM05D000350 ORTHO05D000228 5.0e-20 102.4 220 38.6
Aqoxy6G00142 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 1.9e-19 100.5 231 37.2
Ca_00051_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 1.2e-18 97.8 230 35.7
Potri.019G081800 Populus trichocarpa HOM05D000350 ORTHO05D000228 1.6e-18 97.4 212 41.0
Nitab4.5_0000365g0240 Nicotiana tabacum HOM05D000350 ORTHO05D000228 4.0e-17 92.8 212 36.8
SGA_v2.0_scaffold338G49243 Striga asiatica HOM05D000350 ORTHO05D000228 4.0e-17 92.8 194 38.1
GSVIVG01023283001 Vitis vinifera HOM05D000350 ORTHO05D000228 5.2e-17 92.4 61 72.1
Duzib116G0923 Durio zibethinus HOM05D000350 ORTHO05D000228 2.0e-16 90.5 216 36.1
Aa31LG2G10990 Aethionema arabicum HOM05D000350 ORTHO05D000228 2.6e-16 90.1 128 46.9
Oeu039152.1 Olea europaea HOM05D000350 ORTHO05D000228 2.6e-16 90.1 220 36.8
Potri.013G110700 Populus trichocarpa HOM05D000350 ORTHO05D000228 4.4e-16 89.4 213 39.4
MSTRG.25458 Avicennia marina HOM05D000350 ORTHO05D000228 5.7e-16 89.0 216 33.3
Sabra19G0093400 Salix brachista HOM05D000350 ORTHO05D000228 5.7e-16 89.0 213 40.4
Gohir.A05G273600 Gossypium hirsutum HOM05D000350 ORTHO05D000228 7.5e-16 88.6 215 36.3
Gorai.009G289000 Gossypium raimondii HOM05D000350 ORTHO05D000228 7.5e-16 88.6 215 36.3
Nitab4.5_0009198g0010 Nicotiana tabacum HOM05D000350 ORTHO05D000228 7.5e-16 88.6 213 36.6
Sabra13G0094600 Salix brachista HOM05D000350 ORTHO05D000228 1.3e-15 87.8 213 39.0
Gohir.D05G276000 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.2e-15 87.0 215 36.3
CARHR053950 Cardamine hirsuta HOM05D000350 ORTHO05D000228 2.9e-15 86.7 206 37.9
Duzib177G0411 Durio zibethinus HOM05D000350 ORTHO05D000228 8.3e-15 85.1 220 33.6
Oeu045941.1 Olea europaea HOM05D000350 ORTHO05D000228 8.3e-15 85.1 247 36.4
Peaxi162Scf00391g00048 Petunia axillaris HOM05D000350 ORTHO05D000228 8.3e-15 85.1 218 33.0
Thecc.08G186000 Theobroma cacao HOM05D000350 ORTHO05D000228 8.3e-15 85.1 217 35.9
Solyc06g065190.1 Solanum lycopersicum HOM05D000350 ORTHO05D000228 1.8e-14 84.0 197 36.5
Sopen06g023690 Solanum pennellii HOM05D000350 ORTHO05D000228 1.8e-14 84.0 197 36.5
THA.LOC104823695 Tarenaya hassleriana HOM05D000350 ORTHO05D000228 7.0e-14 82.0 258 40.3
Oeu021221.1 Olea europaea HOM05D000350 ORTHO05D000228 9.2e-14 81.6 218 36.2
Migut.C01285 Erythranthe guttata HOM05D000350 ORTHO05D000228 1.2e-13 81.3 232 34.1
Nitab4.5_0001082g0060 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.2e-13 81.3 219 33.8
PGSC0003DMG400009276 Solanum tuberosum HOM05D000350 ORTHO05D000228 1.2e-13 81.3 212 35.4
Carub.0002s0652 Capsella rubella HOM05D000350 ORTHO05D000228 2.0e-13 80.5 199 36.7
PGSC0003DMG400026105 Solanum tuberosum HOM05D000350 ORTHO05D000228 2.7e-13 80.1 210 36.2
A09p18560 Brassica napus HOM05D000350 ORTHO05D000228 3.5e-13 79.7 210 40.0
BolC9t55236H Brassica oleracea HOM05D000350 ORTHO05D000228 7.8e-13 78.6 188 36.7
BraA09t37482Z Brassica rapa HOM05D000350 ORTHO05D000228 7.8e-13 78.6 210 39.5
Peaxi162Scf00268g00069 Petunia axillaris HOM05D000350 ORTHO05D000228 1.0e-12 78.2 213 33.3
Eucgr.F02587 Eucalyptus grandis HOM05D000350 ORTHO05D000228 1.3e-12 77.8 230 33.9
BcaC04g22116 Brassica carinata HOM05D000350 ORTHO05D000228 2.3e-12 77.0 188 36.7
C09p23170 Brassica napus HOM05D000350 ORTHO05D000228 2.3e-12 77.0 188 36.7
PGR042G1746 Punica granatum HOM05D000350 ORTHO05D000228 2.3e-12 77.0 202 36.6
Nitab4.5_0000303g0270 Nicotiana tabacum HOM05D000350 ORTHO05D000228 3.0e-12 76.6 217 33.2
AT1G58100 Arabidopsis thaliana HOM05D000350 ORTHO05D000228 3.9e-12 76.3 215 35.3
SGA_v2.0_scaffold24G10586 Striga asiatica HOM05D000350 ORTHO05D000228 6.6e-12 75.5 184 35.3
Cpa.g.sc66.26 Carica papaya HOM05D000350 ORTHO05D000228 1.1e-11 74.7 212 36.3
Oeu049819.1 Olea europaea HOM05D000350 ORTHO05D000228 1.1e-11 74.7 130 44.6
CSS0010873 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 1.9e-11 73.9 188 37.8
CSS0021064 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 1.9e-11 73.9 188 37.8
Sopen11g010700 Solanum pennellii HOM05D000350 ORTHO05D000228 3.3e-11 73.2 194 35.1
Solyc11g020670.1 Solanum lycopersicum HOM05D000350 ORTHO05D000228 9.5e-11 71.6 194 35.6
Thhalv10023507m.g Eutrema salsugineum HOM05D000350 ORTHO05D000228 6.2e-10 68.9 146 42.5
Mapoly0068s0102 Marchantia polymorpha HOM05D000350 ORTHO05D000228 8.0e-10 68.6 173 36.4
AL2G18050 Arabidopsis lyrata HOM05D000350 ORTHO05D000228 1.4e-09 67.8 215 33.5
Rhsim06G0095300 Rhododendron simsii HOM05D000350 ORTHO05D000228 1.4e-09 67.8 152 34.2
Pp3c10_14310 Physcomitrium patens HOM05D000350 ORTHO05D000228 1.8e-09 67.4 256 34.0
Sp2g05480 Schrenkiella parvula HOM05D000350 ORTHO05D000228 8.9e-09 65.1 181 35.4
Manes.18G103100 Manihot esculenta HOM05D000350 ORTHO05D000228 2.6e-08 63.5 216 36.6
AagrBONN_evm.TU.Sc2ySwM_344.85 Anthoceros agrestis HOM05D026980 ORTHO05D000228 5.8e-08 62.4 171 35.7
TPR.G2073 Trifolium pratense HOM05D000350 ORTHO05D000228 1.7e-07 60.8 202 29.7
SEGI_17926 Sequoiadendron giganteum HOM05D000350 ORTHO05D000228 2.2e-07 60.5 261 31.0
CAN.G308.67 Capsicum annuum HOM05D000350 ORTHO05D000228 2.9e-07 60.1 110 40.0
Oeu024889.1 Olea europaea HOM05D000350 ORTHO05D000228 6.4e-07 58.9 157 35.0
Pp3c10_20400 Physcomitrium patens HOM05D000350 ORTHO05D000228 6.4e-07 58.9 254 31.5
Manes.02G194200 Manihot esculenta HOM05D000350 ORTHO05D000228 2.4e-06 57.0 189 31.7
THA.LOC104816803 Tarenaya hassleriana HOM05D000350 ORTHO05D000228 3.2e-06 56.6 88 43.2


User provided reference genes

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