Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P244T47 Lonicera japonica HOM05D007736 ORTHO05D009783 7.5e-298 1026.5 569 100.0
Dinv19331 Davidia involucrata HOM05D007736 ORTHO05D009783 5.5e-99 365.9 479 47.8
Dinv24237 Davidia involucrata HOM05D007736 ORTHO05D009783 2.1e-82 310.8 404 48.3
Rhsim11G0133400 Rhododendron simsii HOM05D007736 ORTHO05D009783 2.5e-67 260.8 479 37.8
Cc02_g21990 Coffea canephora HOM05D007736 ORTHO05D009783 8.0e-66 255.8 347 46.4
Actinidia38961 Actinidia chinensis HOM05D007736 ORTHO05D009783 1.5e-64 251.5 457 40.0
vmacro01801 Vaccinium macrocarpon HOM05D007736 ORTHO05D009783 2.2e-63 247.7 459 38.6
TAR625G1059 Trochodendron aralioides HOM05D007736 ORTHO05D009783 3.3e-59 233.8 492 37.2
COL.COLO4_20877 Corchorus olitorius HOM05D007736 ORTHO05D009783 4.9e-55 219.9 255 49.4
Phvul.006G209200 Phaseolus vulgaris HOM05D007736 ORTHO05D009783 8.3e-55 219.2 443 34.5
Haze_10792 Corylus avellana HOM05D007736 ORTHO05D009783 5.4e-54 216.5 281 46.6
Cfa021836 Carpinus fangiana HOM05D007736 ORTHO05D009783 7.1e-54 216.1 309 44.3
TWI14G1332 Tripterygium wilfordii HOM05D007736 ORTHO05D009783 7.1e-54 216.1 457 34.6
ClCG09G014560 Citrullus lanatus HOM05D007736 ORTHO05D009783 1.6e-53 214.9 419 37.9
MELO3C028798.2 Cucumis melo HOM05D007736 ORTHO05D009783 7.8e-53 212.6 410 38.5
CsaV3_7G022310 Cucumis sativus L. HOM05D007736 ORTHO05D009783 2.3e-52 211.1 410 38.5
QL11p018598 Quercus lobata HOM05D007736 ORTHO05D009783 6.6e-52 209.5 289 45.0
Glyma.15G050700 Glycine max HOM05D007736 ORTHO05D009783 8.6e-52 209.1 407 36.4
VMungo0540G1970 Vigna mungo HOM05D007736 ORTHO05D009783 8.6e-52 209.1 411 36.5
CiPaw.05G040000 Carya illinoinensis HOM05D007736 ORTHO05D009783 1.1e-51 208.8 318 43.1
Thecc.02G144400 Theobroma cacao HOM05D007736 ORTHO05D009783 5.6e-51 206.5 285 44.6
Eucgr.I02697 Eucalyptus grandis HOM05D007736 ORTHO05D009783 9.5e-51 205.7 300 41.0
Ca_00110_v3 Cicer arietinum L. HOM05D007736 ORTHO05D009783 1.4e-49 201.8 415 34.7
Sed0025125 Sechium edule HOM05D007736 ORTHO05D009783 1.8e-49 201.4 409 35.9
PGSC0003DMG400029771 Solanum tuberosum HOM05D007736 ORTHO05D009783 3.1e-49 200.7 295 43.4
Nitab4.5_0000249g0440 Nicotiana tabacum HOM05D007736 ORTHO05D009783 4.0e-49 200.3 346 38.2
Solyc01g104790.4 Solanum lycopersicum HOM05D007736 ORTHO05D009783 4.0e-49 200.3 327 40.7
Sopen01g047310 Solanum pennellii HOM05D007736 ORTHO05D009783 5.2e-49 199.9 279 43.7
arahy.Tifrunner.gnm1.ann1.40XV2D Arachis hypogaea HOM05D007736 ORTHO05D009783 2.9e-47 194.1 429 33.8
arahy.Tifrunner.gnm1.ann1.JZ71MD Arachis hypogaea HOM05D007736 ORTHO05D009783 6.4e-47 193.0 425 33.4
Nitab4.5_0014357g0010 Nicotiana tabacum HOM05D007736 ORTHO05D009783 1.1e-46 192.2 354 36.4
Manes.04G057900 Manihot esculenta HOM05D007736 ORTHO05D009783 1.4e-46 191.8 347 37.8
Cpa.g.sc2.48 Carica papaya HOM05D007736 ORTHO05D009783 4.2e-46 190.3 446 33.6
Lsat_1_v5_gn_5_106541 Lactuca sativa HOM05D007736 ORTHO05D009783 5.4e-46 189.9 283 41.0
MSTRG.27826 Avicennia marina HOM05D007736 ORTHO05D009783 7.1e-46 189.5 303 39.6
Potri.015G008200 Populus trichocarpa HOM05D007736 ORTHO05D009783 9.2e-46 189.1 276 43.1
Sc16g0009620 Simmondsia chinensis HOM05D007736 ORTHO05D009783 9.2e-46 189.1 429 34.0
Glyma.08G181600 Glycine max HOM05D007736 ORTHO05D009783 1.2e-45 188.7 401 33.7
CAN.G523.104 Capsicum annuum HOM05D007736 ORTHO05D009783 7.8e-45 186.0 347 38.3
DCAR_021830 Daucus carota HOM05D007736 ORTHO05D009783 7.8e-45 186.0 276 40.9
Sabra15G0006300 Salix brachista HOM05D007736 ORTHO05D009783 7.8e-45 186.0 277 40.8
Potri.012G020400 Populus trichocarpa HOM05D007736 ORTHO05D009783 1.7e-44 184.9 392 34.7
EL10Ac4g09677 Beta vulgaris HOM05D007736 ORTHO05D009783 2.3e-44 184.5 328 37.8
HanXRQChr16g0514111 Helianthus annuus HOM05D007736 ORTHO05D009783 3.0e-44 184.1 277 41.2
Sed0013332 Sechium edule HOM05D007736 ORTHO05D009783 1.9e-43 181.4 413 33.9
Actinidia00233 Actinidia chinensis HOM05D007736 ORTHO05D009783 3.6e-42 177.2 428 34.6
Medtr2g008130 Medicago truncatula HOM05D007736 ORTHO05D009783 8.1e-42 176.0 369 33.1
Hund21796 Selenicereus undatus HOM05D007736 ORTHO05D009783 1.4e-41 175.3 271 39.5
Psat1g218640 Pisum sativum HOM05D007736 ORTHO05D009783 4.0e-41 173.7 317 35.0
Ah.06g188730 Amaranthus hybridus HOM05D007736 ORTHO05D009783 2.0e-40 171.4 263 40.3
PGR142G3153 Punica granatum HOM05D007736 ORTHO05D009783 2.6e-40 171.0 346 36.1
Lj6g0003665 Lotus japonicus HOM05D007736 ORTHO05D009783 7.6e-40 169.5 456 31.1
Sabra12G0012700 Salix brachista HOM05D007736 ORTHO05D009783 9.9e-40 169.1 391 33.0
AUR62006887 Chenopodium quinoa HOM05D007736 ORTHO05D009783 8.4e-39 166.0 330 38.2
Ciclev10028677m.g Citrus clementina HOM05D007736 ORTHO05D009783 1.6e-37 161.8 241 42.3
AUR62000538 Chenopodium quinoa HOM05D007736 ORTHO05D009783 2.1e-37 161.4 336 36.9
HanXRQChr10g0289121 Helianthus annuus HOM05D007736 ORTHO05D009783 4.6e-37 160.2 254 41.3
Migut.N01016 Erythranthe guttata HOM05D007736 ORTHO05D009783 1.7e-36 158.3 407 32.4
unitig_26.g9583 Utricularia gibba HOM05D007736 ORTHO05D009783 5.1e-36 156.8 161 49.7
MSTRG.5252 Avicennia marina HOM05D007736 ORTHO05D009783 6.6e-36 156.4 308 37.7
ECA234G2384 Erigeron canadensis HOM05D007736 ORTHO05D009783 6.6e-36 156.4 237 42.2
TPR.G19753 Trifolium pratense HOM05D007736 ORTHO05D009783 3.3e-35 154.1 246 38.6
Lalb_Chr20g0123201 Lupinus albus HOM05D007736 ORTHO05D009783 1.8e-33 148.3 438 29.2
Aqoxy4G00650 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 5.8e-32 143.3 450 31.1
Atru.chr6.1122 Acer truncatum HOM05D007736 ORTHO05D009783 3.8e-31 140.6 358 32.1
Aqoxy5G02135 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 3.8e-31 140.6 450 30.9
Nn1g06123 Nelumbo nucifera HOM05D007736 ORTHO05D009783 1.9e-27 128.3 147 46.9
Prupe.7G056800 Prunus persica HOM05D007736 ORTHO05D009783 2.5e-27 127.9 140 46.4
SGA_v2.0_scaffold45G17286 Striga asiatica HOM05D007736 ORTHO05D009783 9.6e-27 125.9 272 33.8
Prupe.6G356600 Prunus persica HOM05D007736 ORTHO05D009783 6.9e-25 119.8 136 46.3
TAR381G1413 Trochodendron aralioides HOM05D007736 ORTHO05D009783 1.7e-23 115.2 118 54.2
FAN05G0537 Fragaria x ananassa HOM05D007736 ORTHO05D009783 3.8e-23 114.0 156 40.4
FAN14G5928 Fragaria x ananassa HOM05D007736 ORTHO05D009783 6.4e-23 113.2 155 40.6
RcHm_v2.0_Chr3g0448601 Rosa chinensis HOM05D007736 ORTHO05D009783 8.4e-23 112.8 140 42.9
FvH4_6g01062 Fragaria vesca HOM05D000868 ORTHO05D000711 1.1e-22 112.5 155 40.6
FAN02G1431 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.4e-22 112.1 120 46.7
CDE02G1981 Ceratophyllum demersum HOM05D007736 ORTHO05D009783 2.5e-22 111.3 280 29.3
FAN05G0165 Fragaria x ananassa HOM05D007736 ORTHO05D009783 4.2e-22 110.5 156 39.7
MD04G1236600 Malus domestica HOM05D007736 ORTHO05D009783 4.6e-21 107.1 130 42.3
FAN09G0667 Fragaria x ananassa HOM05D007736 ORTHO05D009783 6.0e-21 106.7 169 39.1
MD12G1255900 Malus domestica HOM05D007736 ORTHO05D009783 1.0e-20 105.9 142 40.1
ATR0772G143 Amborella trichopoda HOM05D007736 ORTHO05D009783 3.7e-18 97.4 425 26.8
Os06g0468400 Oryza sativa ssp. japonica HOM05D007736 ORTHO05D009783 4.2e-14 84.0 274 28.1
Zm00001eb382360 Zea mays HOM05D007736 ORTHO05D009783 1.8e-12 78.6 230 32.6
Oeu012723.3 Olea europaea HOM05D007736 ORTHO05D009783 3.0e-12 77.8 264 31.1
Peaxi162Scf01290g00019 Petunia axillaris HOM05D007736 ORTHO05D009783 1.8e-09 68.6 259 30.5


User provided reference genes

Program Settings