Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 2.1e-33 145.2 77 100.0
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 5.0e-19 97.4 73 76.7
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.3e-16 89.4 73 65.8
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.3e-16 89.4 73 65.8
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 1.8e-16 89.0 57 82.5
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.9e-16 87.8 73 65.8
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.1e-16 87.4 73 64.4
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.5e-15 85.1 71 67.6
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.7e-15 84.0 73 60.3
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 9.7e-15 83.2 73 63.0
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 6.3e-14 80.5 74 60.8
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 8.2e-14 80.1 72 65.3
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 5.3e-13 77.4 75 57.3
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 6.9e-13 77.0 75 57.3
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 9.1e-13 76.6 73 56.2
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.5e-12 75.9 73 60.3
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.5e-12 75.9 77 53.2
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.0e-12 75.5 75 54.7
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.6e-12 75.1 73 58.9
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.6e-12 75.1 72 59.7
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.6e-12 75.1 72 59.7
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 3.4e-12 74.7 70 60.0
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 7.7e-12 73.6 63 60.3
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 7.7e-12 73.6 72 61.1
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 7.7e-12 73.6 73 57.5
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 1.3e-11 72.8 72 55.6
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 1.3e-11 72.8 70 55.7
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.2e-11 72.0 73 53.4
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.9e-11 71.6 53 67.9
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 6.5e-11 70.5 72 55.6
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 6.5e-11 70.5 70 57.1
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 8.5e-11 70.1 72 54.2
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 8.5e-11 70.1 72 54.2
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 8.5e-11 70.1 72 54.2
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 8.5e-11 70.1 73 54.8
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.4e-10 69.3 73 53.4
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.9e-10 68.9 73 57.5
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.9e-10 68.9 62 61.3
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 4.2e-10 67.8 73 56.2
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 5.5e-10 67.4 63 52.4
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 7.2e-10 67.0 76 51.3
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 7.2e-10 67.0 75 50.7
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 7.2e-10 67.0 73 53.4
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 7.2e-10 67.0 73 53.4
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 7.2e-10 67.0 71 56.3
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 9.4e-10 66.6 75 53.3
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 9.4e-10 66.6 72 55.6
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.2e-09 66.2 75 52.0
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.2e-09 66.2 76 47.4
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.2e-09 66.2 71 53.5
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.2e-09 66.2 73 54.8
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.2e-09 66.2 72 55.6
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.2e-09 66.2 62 53.2
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.2e-09 66.2 73 54.8
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.6e-09 65.9 73 56.2
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 2.1e-09 65.5 72 54.2
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.1e-09 65.5 73 56.2
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 2.1e-09 65.5 73 50.7
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 2.1e-09 65.5 72 52.8
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.7e-09 65.1 75 52.0
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 3.6e-09 64.7 72 54.2
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 3.6e-09 64.7 73 54.8
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 4.6e-09 64.3 73 53.4
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.6e-09 64.3 73 54.8
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 4.6e-09 64.3 73 54.8
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 4.6e-09 64.3 73 50.7
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 6.1e-09 63.9 72 50.0
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 6.1e-09 63.9 72 54.2
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 6.1e-09 63.9 73 53.4
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 7.9e-09 63.5 63 52.4
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.4e-08 62.8 72 52.8
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.4e-08 62.8 72 54.2
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 1.4e-08 62.8 72 50.0
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 1.8e-08 62.4 72 51.4
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-08 62.4 72 51.4
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-08 62.4 72 51.4
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.8e-08 62.4 72 51.4
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.8e-08 62.4 72 51.4
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.8e-08 62.4 73 52.1
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.8e-08 62.4 75 49.3
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 2.3e-08 62.0 70 45.7
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 2.3e-08 62.0 75 48.0
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 3.0e-08 61.6 73 50.7
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 3.0e-08 61.6 72 51.4
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 3.0e-08 61.6 72 51.4
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 3.9e-08 61.2 72 51.4
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 5.1e-08 60.8 72 52.8
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 5.1e-08 60.8 73 49.3
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 6.7e-08 60.5 72 50.0
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 6.7e-08 60.5 70 45.7
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 6.7e-08 60.5 73 49.3
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 8.8e-08 60.1 72 50.0
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.1e-07 59.7 72 48.6
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-07 59.3 75 48.0
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-07 59.3 72 50.0
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.5e-07 59.3 72 50.0
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.0e-07 58.9 72 50.0
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.0e-07 58.9 71 50.7
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 2.0e-07 58.9 72 48.6
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.6e-07 58.5 73 47.9
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.6e-07 58.5 75 46.7
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.6e-07 58.5 71 50.7
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 3.3e-07 58.2 72 48.6
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 3.3e-07 58.2 72 48.6
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 3.3e-07 58.2 73 47.9
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 4.4e-07 57.8 62 50.0
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 5.7e-07 57.4 73 47.9
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 5.7e-07 57.4 69 52.2
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 5.7e-07 57.4 72 51.4
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 7.4e-07 57.0 72 48.6
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 7.4e-07 57.0 72 48.6
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 7.4e-07 57.0 72 48.6
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 7.4e-07 57.0 72 45.8
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 7.4e-07 57.0 71 47.9
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 9.7e-07 56.6 73 47.9
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.7e-06 55.8 73 46.6
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.7e-06 55.8 75 45.3
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.7e-06 55.8 69 50.7
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 2.2e-06 55.5 73 46.6
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.2e-06 55.5 72 47.2
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.2e-06 55.5 62 48.4
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 2.2e-06 55.5 72 50.0
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 3.7e-06 54.7 63 46.0
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.7e-06 54.7 62 48.4
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 4.8e-06 54.3 72 48.6
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 6.3e-06 53.9 73 46.6


User provided reference genes

Program Settings