Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 1.7e-73 279.3 143 100.0
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 7.4e-61 237.3 145 86.2
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 3.7e-60 235.0 146 83.6
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 6.3e-60 234.2 146 83.6
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 8.2e-60 233.8 146 83.6
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 1.4e-59 233.0 146 82.9
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 1.4e-59 233.0 146 82.9
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 2.4e-59 232.3 148 81.8
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.1e-59 231.9 146 83.6
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.1e-59 231.9 146 83.6
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.1e-59 231.9 146 83.6
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 7.7e-58 227.3 144 79.9
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 1.0e-57 226.9 146 78.8
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.0e-57 226.9 146 79.5
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.0e-57 226.9 146 79.5
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 1.3e-57 226.5 146 80.1
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.7e-57 226.1 146 81.5
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.7e-57 226.1 147 81.0
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.7e-57 226.1 147 81.0
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.7e-57 226.1 146 81.5
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 2.2e-57 225.7 145 80.7
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.2e-57 225.7 147 81.6
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 5.0e-57 224.6 143 81.1
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 6.5e-57 224.2 147 81.0
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 6.5e-57 224.2 147 78.9
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 8.5e-57 223.8 146 82.2
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 1.5e-56 223.0 146 78.8
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 1.9e-56 222.6 145 79.3
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 1.9e-56 222.6 146 81.5
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 1.9e-56 222.6 145 79.3
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 2.5e-56 222.2 146 81.5
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.5e-56 222.2 146 80.1
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.5e-56 222.2 146 80.1
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 2.5e-56 222.2 145 80.0
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 4.2e-56 221.5 145 81.4
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 4.2e-56 221.5 146 79.5
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 5.5e-56 221.1 146 80.1
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 5.5e-56 221.1 146 78.1
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 5.5e-56 221.1 146 79.5
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 7.2e-56 220.7 146 80.1
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 7.2e-56 220.7 144 79.2
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 7.2e-56 220.7 144 79.2
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 7.2e-56 220.7 144 79.2
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 9.4e-56 220.3 146 77.4
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 9.4e-56 220.3 146 79.5
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.6e-55 219.5 144 78.5
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 1.6e-55 219.5 146 80.1
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 2.1e-55 219.2 147 78.9
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.7e-55 218.8 144 78.5
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 2.7e-55 218.8 145 79.3
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 3.6e-55 218.4 145 80.0
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 3.6e-55 218.4 148 79.1
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 3.6e-55 218.4 147 80.3
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 4.7e-55 218.0 135 83.0
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 6.1e-55 217.6 145 78.6
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 6.1e-55 217.6 146 79.5
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.0e-54 216.9 149 76.5
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 1.0e-54 216.9 147 78.9
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 1.0e-54 216.9 147 78.9
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 1.0e-54 216.9 147 78.9
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 1.0e-54 216.9 147 78.9
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 1.4e-54 216.5 147 78.2
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 1.8e-54 216.1 146 80.1
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 1.8e-54 216.1 147 77.6
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 1.8e-54 216.1 147 79.6
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 1.8e-54 216.1 146 78.1
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 4.0e-54 214.9 144 79.2
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 5.2e-54 214.5 147 78.9
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 6.7e-54 214.2 146 77.4
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 6.7e-54 214.2 145 78.6
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 1.2e-53 213.4 147 76.9
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 2.0e-53 212.6 147 76.9
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 2.0e-53 212.6 146 78.1
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 2.6e-53 212.2 149 77.2
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 1.3e-52 209.9 147 76.2
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 1.8e-51 206.1 146 74.7
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 2.4e-51 205.7 145 73.1
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 5.3e-51 204.5 155 73.5
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 1.6e-50 203.0 149 71.1
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 1.0e-49 200.3 139 78.4
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.0e-49 200.3 150 73.3
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 1.3e-49 199.9 147 69.4
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.3e-49 199.9 146 75.3
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.7e-49 199.5 146 75.3
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.2e-49 199.1 150 72.7
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.2e-49 199.1 150 72.7
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 2.5e-48 195.7 147 72.1
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 2.1e-47 192.6 152 71.1
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 2.7e-47 192.2 149 67.1
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 3.6e-47 191.8 151 69.5
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 1.8e-46 189.5 154 66.9
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.8e-46 189.5 154 67.5
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 4.0e-46 188.3 143 69.2
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 5.2e-46 188.0 152 67.8
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 5.2e-46 188.0 143 69.9
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 6.8e-46 187.6 143 69.2
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 2.0e-45 186.0 153 66.7
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 3.4e-45 185.3 152 67.1
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 9.8e-45 183.7 157 64.3
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 1.3e-44 183.3 115 82.6
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 2.8e-44 182.2 153 64.7
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.1e-43 180.3 145 67.6
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 3.1e-43 178.7 145 66.9
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 2.7e-42 175.6 152 64.5
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.3e-41 173.3 146 64.4
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.3e-41 172.6 109 84.4
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 4.2e-40 168.3 140 64.3
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 4.2e-40 168.3 140 64.3
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 7.2e-40 167.5 136 69.1
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 7.2e-40 167.5 111 81.1
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 9.5e-40 167.2 161 59.0
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.0e-38 163.7 105 81.9
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 1.4e-38 163.3 150 63.3
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 2.6e-37 159.1 147 63.3
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 4.4e-37 158.3 131 68.7
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 1.3e-36 156.8 149 58.4
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 3.1e-35 152.1 100 79.0
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 9.2e-35 150.6 145 58.6
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 1.4e-30 136.7 152 53.9
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 4.0e-30 135.2 130 57.7
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 6.8e-30 134.4 89 78.7
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 8.9e-30 134.0 89 79.8
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 1.5e-29 133.3 85 78.8
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 2.0e-29 132.9 89 77.5
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 2.4e-27 125.9 137 51.1
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 1.6e-26 123.2 165 50.3
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 5.0e-25 118.2 128 50.8
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 2.0e-21 106.3 78 67.9
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 2.2e-20 102.8 148 45.3
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 8.3e-20 100.9 79 58.2
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 3.2e-19 99.0 147 41.5
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 4.1e-19 98.6 79 65.8
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 9.2e-19 97.4 79 59.5
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.2e-18 97.1 71 67.6
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.2e-18 97.1 71 67.6
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 6.0e-18 94.7 71 64.8
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 1.0e-17 94.0 141 44.0
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 8.6e-17 90.9 69 59.4
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.5e-16 89.4 69 62.3
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 3.3e-16 89.0 69 62.3
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.3e-16 88.6 69 60.9
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 2.0e-13 79.7 72 55.6
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 5.8e-13 78.2 72 54.2
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.4e-11 73.6 122 44.3
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.6e-10 70.1 72 51.4
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 2.7e-10 69.3 70 48.6
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 2.1e-07 59.7 72 40.3
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.8e-07 59.3 72 44.4
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 8.1e-07 57.8 51 58.8


User provided reference genes

Program Settings