Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P133T80 Lonicera japonica HOM05D007778 ORTHO05D009819 8.9e-57 223.4 115 100.0
Haze_14055 Corylus avellana HOM05D007778 ORTHO05D009819 1.1e-33 146.7 115 67.0
Haze_14066 Corylus avellana HOM05D007778 ORTHO05D009819 1.1e-33 146.7 115 67.0
QL02p054670 Quercus lobata HOM05D007778 ORTHO05D009819 1.1e-33 146.7 114 68.4
Actinidia04816 Actinidia chinensis HOM05D001693 ORTHO05D001588 3.1e-33 145.2 114 68.4
CAN.G1228.14 Capsicum annuum HOM05D007778 ORTHO05D009819 4.5e-32 141.4 111 64.9
PGSC0003DMG400024679 Solanum tuberosum HOM05D007778 ORTHO05D009819 4.5e-32 141.4 114 64.0
Nn4g24886 Nelumbo nucifera HOM05D007778 ORTHO05D009819 7.6e-32 140.6 115 67.0
Thecc.04G114700 Theobroma cacao HOM05D007778 ORTHO05D009819 7.6e-32 140.6 115 62.6
Duzib211G0615 Durio zibethinus HOM05D007778 ORTHO05D009819 1.0e-31 140.2 115 62.6
COL.COLO4_05993 Corchorus olitorius HOM05D007778 ORTHO05D009819 2.9e-31 138.7 115 60.9
MD09G1282000 Malus domestica HOM05D007778 ORTHO05D009819 2.9e-31 138.7 115 64.3
TPR.G37414 Trifolium pratense HOM05D007778 ORTHO05D009819 2.9e-31 138.7 115 62.6
Nitab4.5_0001485g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 8.4e-31 137.1 115 65.2
Aqoxy3G04229 Aquilegia oxysepala HOM05D007778 ORTHO05D009819 1.1e-30 136.7 114 64.0
AUR62037508 Chenopodium quinoa HOM05D007778 ORTHO05D009819 1.1e-30 136.7 115 62.6
Oeu032099.1 Olea europaea HOM05D007778 ORTHO05D009819 1.1e-30 136.7 115 65.2
Prupe.3G011900 Prunus persica HOM05D007778 ORTHO05D009819 1.1e-30 136.7 115 63.5
Nitab4.5_0007160g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 2.5e-30 135.6 115 64.3
Lalb_Chr15g0085401 Lupinus albus HOM05D007778 ORTHO05D009819 3.2e-30 135.2 112 62.5
RcHm_v2.0_Chr3g0487781 Rosa chinensis HOM05D007778 ORTHO05D009819 3.2e-30 135.2 115 62.6
CSS0000221 Camellia sinensis var. sinensis HOM05D007778 ORTHO05D009819 1.2e-29 133.3 115 62.6
FvH4_1g27614 Fragaria vesca HOM05D007778 ORTHO05D009819 1.2e-29 133.3 115 61.7
AUR62004744 Chenopodium quinoa HOM05D007778 ORTHO05D009819 1.6e-29 132.9 115 60.9
Psat4g221240 Pisum sativum HOM05D007778 ORTHO05D009819 1.6e-29 132.9 115 60.0
Migut.D01632 Erythranthe guttata HOM05D007778 ORTHO05D009819 2.1e-29 132.5 115 64.3
TWI74G0094 Tripterygium wilfordii HOM05D007778 ORTHO05D009819 2.1e-29 132.5 115 60.9
EL10Ac4g08900 Beta vulgaris HOM05D007778 ORTHO05D009819 2.7e-29 132.1 115 62.6
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 4.6e-29 131.3 115 62.6
Cc07_g09880 Coffea canephora HOM05D007778 ORTHO05D009819 4.6e-29 131.3 115 61.7
Medtr3g064070 Medicago truncatula HOM05D007778 ORTHO05D009819 6.0e-29 131.0 115 60.0
Lsat_1_v5_gn_4_110701 Lactuca sativa HOM05D007778 ORTHO05D009819 7.9e-29 130.6 114 63.2
FAN28G0539 Fragaria x ananassa HOM05D007778 ORTHO05D009819 1.0e-28 130.2 115 60.9
Glyma.18G046700 Glycine max HOM05D007778 ORTHO05D009819 1.0e-28 130.2 111 60.4
MBI06_g15669_MAGBIO Magnolia biondii HOM05D007778 ORTHO05D009819 1.8e-28 129.4 115 59.1
arahy.Tifrunner.gnm1.ann1.0X1LIN Arachis hypogaea HOM05D007778 ORTHO05D009819 2.3e-28 129.0 112 63.4
arahy.Tifrunner.gnm1.ann1.U19ACF Arachis hypogaea HOM05D007778 ORTHO05D009819 2.3e-28 129.0 112 63.4
Ciclev10012879m.g Citrus clementina HOM05D007778 ORTHO05D009819 2.3e-28 129.0 115 59.1
Glyma.11G204300 Glycine max HOM05D007778 ORTHO05D009819 3.9e-28 128.3 112 60.7
HanXRQChr09g0270391 Helianthus annuus HOM05D007778 ORTHO05D009819 3.9e-28 128.3 115 62.6
VMungo0540G2068 Vigna mungo HOM05D007778 ORTHO05D009819 3.9e-28 128.3 112 58.9
Dinv17427 Davidia involucrata HOM05D007778 ORTHO05D009819 5.1e-28 127.9 101 68.3
Gohir.D07G082800 Gossypium hirsutum HOM05D007778 ORTHO05D009819 5.1e-28 127.9 115 58.3
Gorai.001G088400 Gossypium raimondii HOM05D007778 ORTHO05D009819 5.1e-28 127.9 115 58.3
CDE05G2207 Ceratophyllum demersum HOM05D007778 ORTHO05D009819 6.7e-28 127.5 115 57.4
PSO782G0382 Papaver somniferum HOM05D007778 ORTHO05D009819 8.7e-28 127.1 115 59.1
Gohir.A07G078000 Gossypium hirsutum HOM05D007778 ORTHO05D009819 1.9e-27 125.9 115 57.4
FAN28G2555 Fragaria x ananassa HOM05D007778 ORTHO05D009819 2.5e-27 125.6 107 61.7
Manes.01G118400 Manihot esculenta HOM05D007778 ORTHO05D009819 3.3e-27 125.2 111 60.4
PGR102G3280 Punica granatum HOM05D007778 ORTHO05D009819 3.3e-27 125.2 115 59.1
MELO3C025069.2 Cucumis melo HOM05D007778 ORTHO05D009819 5.7e-27 124.4 115 57.4
PSO063G5463 Papaver somniferum HOM05D007778 ORTHO05D009819 1.3e-26 123.2 115 58.3
Atru.chr1.1920 Acer truncatum HOM05D007778 ORTHO05D009819 1.6e-26 122.9 115 59.1
Phvul.006G084300 Phaseolus vulgaris HOM05D007778 ORTHO05D009819 1.6e-26 122.9 112 56.2
ClCG01G008280 Citrullus lanatus HOM05D007778 ORTHO05D009819 6.3e-26 120.9 115 56.5
Cpa.g.sc116.56 Carica papaya HOM05D007778 ORTHO05D009819 8.2e-26 120.6 111 60.4
CsaV3_5G020220 Cucumis sativus L. HOM05D007778 ORTHO05D009819 2.4e-25 119.0 115 56.5
Lj6g0006010 Lotus japonicus HOM05D007778 ORTHO05D009819 2.4e-25 119.0 112 56.2
SalBow7G4718 Salvia bowleyana HOM05D007778 ORTHO05D009819 5.3e-25 117.9 114 56.1
FAN26G2882 Fragaria x ananassa HOM05D007778 ORTHO05D009819 1.2e-24 116.7 98 62.2
Rhsim08G0144800 Rhododendron simsii HOM05D007778 ORTHO05D009819 2.6e-24 115.5 92 63.0
Eucgr.C02480 Eucalyptus grandis HOM05D007778 ORTHO05D009819 5.9e-24 114.4 112 51.8
Sabra17G0107900 Salix brachista HOM05D007778 ORTHO05D009819 1.0e-23 113.6 113 54.9
Eucgr.C02546 Eucalyptus grandis HOM05D007778 ORTHO05D009819 1.3e-23 113.2 112 50.9
CANSAT78G1962 Cannabis sativa HOM05D007778 ORTHO05D009819 6.5e-23 110.9 114 53.5
Os04g0523000 Oryza sativa ssp. japonica HOM05D007778 ORTHO05D009819 2.5e-22 109.0 114 49.1
Potri.017G129700 Populus trichocarpa HOM05D007778 ORTHO05D009819 4.6e-21 104.8 113 50.4
unitig_736.g22611 Utricularia gibba HOM05D007778 ORTHO05D009819 1.8e-20 102.8 115 50.4
Eucgr.I00539 Eucalyptus grandis HOM05D007778 ORTHO05D009819 5.1e-20 101.3 89 57.3
CiPaw.03G008500 Carya illinoinensis HOM05D007778 ORTHO05D009819 8.7e-20 100.5 87 63.2
Cfa008003 Carpinus fangiana HOM05D007778 ORTHO05D009819 2.5e-19 99.0 78 65.4
MD09G1282100 Malus domestica HOM05D007778 ORTHO05D009819 2.5e-19 99.0 84 64.3
Zm00001eb077030 Zea mays HOM05D007778 ORTHO05D009819 2.5e-19 99.0 114 45.6
GSVIVG01000799001 Vitis vinifera HOM05D007778 ORTHO05D009819 3.3e-19 98.6 75 68.0
THA.LOC104823842 Tarenaya hassleriana HOM05D007778 ORTHO05D009819 8.2e-18 94.0 112 45.5
Sp5g21340 Schrenkiella parvula HOM05D007778 ORTHO05D009819 1.4e-17 93.2 114 43.9
AL5G11050 Arabidopsis lyrata HOM05D007778 ORTHO05D009819 1.8e-17 92.8 112 42.9
Carub.0005s0093 Capsella rubella HOM05D007778 ORTHO05D009819 2.4e-17 92.4 112 43.8
CARHR144520 Cardamine hirsuta HOM05D007778 ORTHO05D009819 4.1e-17 91.7 112 42.9
Sed0002702 Sechium edule HOM05D007778 ORTHO05D009819 5.3e-17 91.3 85 57.6
AT2G01918 Arabidopsis thaliana HOM05D007778 ORTHO05D009819 1.2e-16 90.1 112 42.9
BcaB05g24166 Brassica carinata HOM05D007778 ORTHO05D009819 6.5e-15 84.3 104 43.3
Aa31LG2G2990 Aethionema arabicum HOM05D007778 ORTHO05D009819 2.1e-13 79.3 111 39.6
BcaC03g14741 Brassica carinata HOM05D007778 ORTHO05D009819 3.6e-13 78.6 112 37.5
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 3.6e-13 78.6 112 37.5
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 3.9e-12 75.1 101 39.6
BraA02t06417Z Brassica rapa HOM05D003087 ORTHO05D009819 3.9e-12 75.1 101 39.6
ATR0618G409 Amborella trichopoda HOM05D007778 ORTHO05D009819 5.1e-12 74.7 82 48.8
Duzib133G0400 Durio zibethinus HOM05D007778 ORTHO05D009819 1.5e-11 73.2 67 59.7
Thhalv10019189m.g Eutrema salsugineum HOM05D007778 ORTHO05D009819 4.8e-10 68.2 112 35.7
Nitab4.5_0003738g0060 Nicotiana tabacum HOM05D004209 ORTHO05D004970 2.6e-08 62.4 111 31.5
Lsat_1_v5_gn_1_123241 Lactuca sativa HOM05D004209 ORTHO05D004970 1.0e-07 60.5 105 35.2
CAN.G533.5 Capsicum annuum HOM05D007778 ORTHO05D009819 1.7e-07 59.7 52 59.6
THA.LOC104812569 Tarenaya hassleriana HOM05D004209 ORTHO05D004970 1.7e-07 59.7 105 34.3
HanXRQChr01g0004411 Helianthus annuus HOM05D004209 ORTHO05D004970 2.2e-07 59.3 105 36.2
vmacro15841 Vaccinium macrocarpon HOM05D004209 ORTHO05D004970 2.2e-07 59.3 96 35.4
AUR62014619 Chenopodium quinoa HOM05D004209 ORTHO05D004970 2.9e-07 58.9 105 33.3
AUR62044485 Chenopodium quinoa HOM05D004209 ORTHO05D004970 2.9e-07 58.9 105 33.3
BcaB01g01890 Brassica carinata HOM05D004209 ORTHO05D004970 3.8e-07 58.5 105 33.3
DCAR_028152 Daucus carota HOM05D004209 ORTHO05D004970 3.8e-07 58.5 105 33.3
Thhalv10028939m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 3.8e-07 58.5 105 33.3
Pp3c5_4110 Physcomitrium patens HOM05D004209 ORTHO05D004970 3.8e-07 58.5 105 32.4
Sp6g03810 Schrenkiella parvula HOM05D004209 ORTHO05D004970 3.8e-07 58.5 105 33.3
BcaC04g21382 Brassica carinata HOM05D004209 ORTHO05D004970 5.0e-07 58.2 105 33.3
BcaNung03829 Brassica carinata HOM05D004209 ORTHO05D004970 5.0e-07 58.2 105 32.4
A09p25550 Brassica napus HOM05D004209 ORTHO05D004970 5.0e-07 58.2 105 33.3
C09p32460 Brassica napus HOM05D004209 ORTHO05D004970 5.0e-07 58.2 105 33.3
BraA09t38130Z Brassica rapa HOM05D004209 ORTHO05D004970 5.0e-07 58.2 105 33.3
Thhalv10026172m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 5.0e-07 58.2 105 32.4
HanXRQChr11g0339031 Helianthus annuus HOM05D004209 ORTHO05D004970 5.0e-07 58.2 105 35.2
Lalb_Chr07g0195561 Lupinus albus HOM05D004209 ORTHO05D004970 5.0e-07 58.2 105 33.3
Sp7g19360 Schrenkiella parvula HOM05D004209 ORTHO05D004970 5.0e-07 58.2 105 33.3
AL6G48780 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 6.5e-07 57.8 105 32.4
BolC9t56091H Brassica oleracea HOM05D004209 ORTHO05D004970 6.5e-07 57.8 96 34.4
SMO171G0022 Selaginella moellendorffii HOM05D004209 ORTHO05D004970 6.5e-07 57.8 105 32.4
Aa31LG6G3270 Aethionema arabicum HOM05D004209 ORTHO05D004970 8.5e-07 57.4 105 31.4
CDE02G0449 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 1.1e-06 57.0 97 33.0
Aqoxy4G02128 Aquilegia oxysepala HOM05D004209 ORTHO05D004970 1.4e-06 56.6 105 34.3
AL7G32830 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 1.4e-06 56.6 105 31.4
Ciclev10016525m.g Citrus clementina HOM05D004209 ORTHO05D004970 1.4e-06 56.6 111 34.2
BcaC09g51238 Brassica carinata HOM05D004209 ORTHO05D004970 1.9e-06 56.2 105 32.4
A01p12630 Brassica napus HOM05D004209 ORTHO05D004970 1.9e-06 56.2 105 32.4
C01p15220 Brassica napus HOM05D004209 ORTHO05D004970 1.9e-06 56.2 105 32.4
BolC1t01473H Brassica oleracea HOM05D004209 ORTHO05D004970 1.9e-06 56.2 105 32.4
BraA01t01206Z Brassica rapa HOM05D004209 ORTHO05D004970 1.9e-06 56.2 105 32.4
PSO210G5932 Papaver somniferum HOM05D004209 ORTHO05D004970 1.9e-06 56.2 109 31.2
AT4G05180 Arabidopsis thaliana HOM05D004209 ORTHO05D004970 2.5e-06 55.8 105 31.4
DCAR_024925 Daucus carota HOM05D004209 ORTHO05D004970 2.5e-06 55.8 105 30.5
PSO832G1281 Papaver somniferum HOM05D004209 ORTHO05D004970 2.5e-06 55.8 109 31.2
Carub.0007s2015 Capsella rubella HOM05D004209 ORTHO05D004970 3.2e-06 55.5 105 31.4
Aa31LG9G9260 Aethionema arabicum HOM05D004209 ORTHO05D004970 4.2e-06 55.1 105 31.4
Lalb_Chr13g0290461 Lupinus albus HOM05D004209 ORTHO05D004970 4.2e-06 55.1 105 33.3
AT4G21280 Arabidopsis thaliana HOM05D004209 ORTHO05D004970 5.5e-06 54.7 105 30.5
COL.COLO4_31686 Corchorus olitorius HOM05D004209 ORTHO05D004970 7.2e-06 54.3 105 31.4
Lj3g0019605 Lotus japonicus HOM05D004209 ORTHO05D004970 7.2e-06 54.3 105 30.5
Rhsim02G0115100 Rhododendron simsii HOM05D004209 ORTHO05D004970 7.2e-06 54.3 96 32.3
Sc24g0000590 Simmondsia chinensis HOM05D004209 ORTHO05D004970 7.2e-06 54.3 105 33.3
PGSC0003DMG400021727 Solanum tuberosum HOM05D004209 ORTHO05D004970 7.2e-06 54.3 105 28.6
EL10As6g23703 Beta vulgaris HOM05D004209 ORTHO05D004970 9.4e-06 53.9 105 30.5
CARHR227860 Cardamine hirsuta HOM05D004209 ORTHO05D004970 9.4e-06 53.9 105 30.5
AUR62012582 Chenopodium quinoa HOM05D004209 ORTHO05D004970 9.4e-06 53.9 105 31.4
FAN21G1744 Fragaria x ananassa HOM05D004209 ORTHO05D004970 9.4e-06 53.9 105 31.4
Glyma.07G112000 Glycine max HOM05D004209 ORTHO05D004970 9.4e-06 53.9 105 32.4
Sabra11G0018800 Salix brachista HOM05D004209 ORTHO05D004970 9.4e-06 53.9 96 33.3
Sc24g0000090 Simmondsia chinensis HOM05D004209 ORTHO05D004970 9.4e-06 53.9 105 33.3
SGA_v2.0_scaffold49G18269 Striga asiatica HOM05D004209 ORTHO05D004970 9.4e-06 53.9 96 33.3


User provided reference genes

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