Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 8.8e-148 526.9 267 100.0
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 4.0e-108 395.2 265 72.8
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 4.9e-106 388.3 265 72.5
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 2.3e-103 379.4 266 69.2
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.1e-102 377.1 265 70.2
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 9.5e-102 374.0 265 69.4
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 1.2e-101 373.6 265 68.7
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 4.6e-96 355.1 263 64.6
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 6.0e-96 354.8 263 65.0
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 4.7e-93 345.1 263 62.7
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 1.1e-92 344.0 244 68.9
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 1.8e-92 343.2 262 62.6
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 2.3e-92 342.8 265 61.5
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 2.3e-92 342.8 267 62.9
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 5.8e-91 338.2 265 63.0
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.7e-90 335.5 262 60.3
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 1.4e-89 333.6 257 64.2
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 2.4e-89 332.8 263 59.7
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 2.4e-89 332.8 263 59.3
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 2.4e-89 332.8 265 64.2
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 5.4e-89 331.6 262 59.5
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 1.2e-88 330.5 265 62.3
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 2.1e-88 329.7 260 62.3
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 2.1e-88 329.7 259 64.9
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 2.7e-88 329.3 263 59.7
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 4.6e-88 328.6 263 59.3
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 7.8e-88 327.8 263 62.0
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.3e-87 327.0 265 61.1
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 6.6e-87 324.7 260 62.3
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 8.6e-87 324.3 263 58.6
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 3.3e-86 322.4 265 61.1
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 7.3e-86 321.2 265 60.4
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.2e-85 320.5 262 60.7
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 1.2e-85 320.5 265 57.7
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 1.6e-85 320.1 264 57.6
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 3.6e-85 318.9 265 58.9
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 8.1e-85 317.8 262 59.9
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 1.4e-84 317.0 263 59.7
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 3.1e-84 315.8 247 62.3
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 3.1e-84 315.8 262 60.3
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 3.1e-84 315.8 262 60.7
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 3.1e-84 315.8 267 59.6
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 4.0e-84 315.5 257 60.7
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 1.2e-83 313.9 260 60.0
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 1.2e-83 313.9 263 57.0
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.5e-83 313.5 260 60.4
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 2.0e-83 313.2 260 61.9
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 4.4e-83 312.0 263 58.9
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.3e-82 310.5 260 60.8
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 1.7e-82 310.1 262 58.0
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 2.9e-82 309.3 260 59.6
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 3.8e-82 308.9 265 55.8
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 3.8e-82 308.9 262 58.4
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 4.9e-82 308.5 253 59.7
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 4.9e-82 308.5 262 59.5
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 6.4e-82 308.1 263 55.1
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 6.4e-82 308.1 262 57.3
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 8.4e-82 307.8 266 59.0
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 8.4e-82 307.8 265 57.7
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 3.2e-81 305.8 262 56.1
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 4.2e-81 305.4 266 55.3
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 1.2e-80 303.9 265 57.7
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 2.7e-80 302.8 259 57.1
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 7.8e-80 301.2 265 53.6
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 7.8e-80 301.2 260 55.4
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 1.3e-79 300.4 180 86.7
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 1.3e-79 300.4 264 57.6
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 2.3e-79 299.7 264 53.8
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 6.6e-79 298.1 265 53.2
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 6.6e-79 298.1 262 58.0
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 8.7e-79 297.7 263 54.8
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 1.1e-78 297.4 260 55.0
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 1.9e-78 296.6 260 56.9
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 1.9e-78 296.6 260 57.7
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 2.5e-78 296.2 262 58.0
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 3.3e-78 295.8 265 52.8
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 3.3e-78 295.8 262 55.7
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 9.6e-78 294.3 260 56.9
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 9.6e-78 294.3 263 54.8
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 2.1e-77 293.1 262 52.7
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 2.8e-77 292.7 267 56.9
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 3.6e-77 292.4 260 56.9
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 3.6e-77 292.4 260 55.4
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 4.8e-77 292.0 264 56.4
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 1.8e-76 290.0 259 57.9
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 4.0e-76 288.9 260 54.6
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 5.3e-76 288.5 265 54.7
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 1.2e-75 287.3 260 56.2
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 2.6e-75 286.2 268 52.2
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 3.4e-75 285.8 252 57.5
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 4.4e-75 285.4 252 56.3
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 4.4e-75 285.4 267 51.7
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 7.6e-75 284.6 268 54.9
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 7.6e-75 284.6 251 55.4
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 7.6e-75 284.6 251 55.4
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 6.4e-74 281.6 260 56.5
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 8.4e-74 281.2 251 54.6
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 1.2e-72 277.3 262 55.0
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 2.7e-72 276.2 260 53.5
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 2.3e-71 273.1 262 52.3
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.5e-70 270.4 261 51.7
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 1.5e-70 270.4 262 53.1
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 7.3e-70 268.1 181 72.9
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 1.8e-68 263.5 264 52.3
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 6.9e-68 261.5 268 51.5
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 2.2e-66 256.5 264 51.5
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 5.5e-65 251.9 264 48.1
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 4.6e-64 248.8 260 48.5
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.3e-61 240.7 225 51.1
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 2.0e-59 233.4 214 51.9
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 1.3e-53 214.2 244 45.1
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 1.7e-50 203.8 179 57.5
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 1.4e-44 184.1 291 38.5
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 2.3e-39 166.8 246 36.2
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 8.5e-34 148.3 197 39.1
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 2.1e-32 143.7 225 35.1
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 1.1e-30 137.9 185 43.2
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 7.2e-25 118.6 273 29.7
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 4.0e-23 112.8 244 27.0
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 8.8e-23 111.7 256 32.0
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 4.8e-21 105.9 181 38.1
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 6.3e-21 105.5 279 27.2
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 1.3e-18 97.8 300 25.3
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 1.3e-18 97.8 300 25.3
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 2.5e-17 93.6 254 29.5
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.8e-15 87.4 99 45.5
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 2.8e-13 80.1 140 38.6
Dinv09820 Davidia involucrata HOM05D000025 ORTHO05D000450 7.7e-11 72.0 47 70.2
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 5.2e-07 59.3 277 24.5


User provided reference genes

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