Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P105T57 Lonicera japonica HOM05D001031 ORTHO05D000857 2.0e-28 128.3 60 100.0
Lj1P112T18 Lonicera japonica HOM05D001031 ORTHO05D000857 4.9e-22 107.1 54 87.0
Peaxi162Scf00455g01310 Petunia axillaris HOM05D001031 ORTHO05D000857 6.0e-12 73.6 54 55.6
CAN.G62.56 Capsicum annuum HOM05D001031 ORTHO05D000857 3.9e-11 70.9 53 56.6
PGSC0003DMG400017580 Solanum tuberosum HOM05D001031 ORTHO05D000857 5.1e-11 70.5 53 58.5
Phvul.006G081000 Phaseolus vulgaris HOM05D001031 ORTHO05D000857 2.5e-10 68.2 52 53.8
Solyc06g060520.1 Solanum lycopersicum HOM05D001031 ORTHO05D000857 2.5e-10 68.2 53 56.6
Sopen06g020640 Solanum pennellii HOM05D001031 ORTHO05D000857 2.5e-10 68.2 53 56.6
Dinv28754 Davidia involucrata HOM05D001031 ORTHO05D000857 4.3e-10 67.4 52 61.5
QL01p023758 Quercus lobata HOM05D001031 ORTHO05D000857 4.3e-10 67.4 52 51.9
PGSC0003DMG400027699 Solanum tuberosum HOM05D001031 ORTHO05D000857 4.3e-10 67.4 50 56.0
VMungo0540G2340 Vigna mungo HOM05D001031 ORTHO05D000857 4.3e-10 67.4 52 53.8
EL10Ac4g08549 Beta vulgaris HOM05D001031 ORTHO05D000857 5.6e-10 67.0 50 54.0
CiPaw.13G060500 Carya illinoinensis HOM05D001031 ORTHO05D000857 5.6e-10 67.0 52 48.1
Cc01_g15490 Coffea canephora HOM05D001031 ORTHO05D000857 5.6e-10 67.0 46 58.7
Nn3g17113 Nelumbo nucifera HOM05D001031 ORTHO05D000857 5.6e-10 67.0 50 54.0
Ca_15084_v3 Cicer arietinum L. HOM05D001031 ORTHO05D000857 7.3e-10 66.6 52 53.8
Glyma.09G271500 Glycine max HOM05D001031 ORTHO05D000857 7.3e-10 66.6 52 53.8
Solyc10g074820.1 Solanum lycopersicum HOM05D001031 ORTHO05D000857 9.5e-10 66.2 50 56.0
Sopen10g027310 Solanum pennellii HOM05D001031 ORTHO05D000857 9.5e-10 66.2 50 56.0
CAN.G803.34 Capsicum annuum HOM05D001031 ORTHO05D000857 1.2e-09 65.9 53 52.8
Lalb_Chr15g0085641 Lupinus albus HOM05D001031 ORTHO05D000857 1.6e-09 65.5 52 51.9
DCAR_018585 Daucus carota HOM05D001031 ORTHO05D000857 2.1e-09 65.1 52 50.0
Glyma.18G050200 Glycine max HOM05D001031 ORTHO05D000857 2.1e-09 65.1 52 53.8
TPR.G30731 Trifolium pratense HOM05D001031 ORTHO05D000857 2.1e-09 65.1 51 51.0
VMungo0647G1489 Vigna mungo HOM05D001031 ORTHO05D000857 2.1e-09 65.1 52 55.8
Ciclev10013895m.g Citrus clementina HOM05D001031 ORTHO05D000857 2.8e-09 64.7 50 52.0
Nitab4.5_0000195g0060 Nicotiana tabacum HOM05D001031 ORTHO05D000857 2.8e-09 64.7 53 56.6
TPR.G13824 Trifolium pratense HOM05D001031 ORTHO05D000857 2.8e-09 64.7 52 53.8
MD04G1178000 Malus domestica HOM05D001031 ORTHO05D000857 3.6e-09 64.3 50 54.0
Medtr3g062840 Medicago truncatula HOM05D001031 ORTHO05D000857 3.6e-09 64.3 52 53.8
RcHm_v2.0_Chr3g0459851 Rosa chinensis HOM05D001031 ORTHO05D000857 3.6e-09 64.3 50 56.0
Ciclev10012288m.g Citrus clementina HOM05D001031 ORTHO05D000857 4.7e-09 63.9 48 54.2
Glyma.02G237900 Glycine max HOM05D001031 ORTHO05D000857 4.7e-09 63.9 52 51.9
Peaxi162Scf00374g00043 Petunia axillaris HOM05D001031 ORTHO05D000857 4.7e-09 63.9 50 52.0
Hma1.2p1_0170F.1_g075360 Hydrangea macrophylla HOM05D001031 ORTHO05D000857 6.2e-09 63.5 52 59.6
Nitab4.5_0003559g0020 Nicotiana tabacum HOM05D001031 ORTHO05D000857 6.2e-09 63.5 53 52.8
Prupe.6G297900 Prunus persica HOM05D001031 ORTHO05D000857 6.2e-09 63.5 50 52.0
arahy.Tifrunner.gnm1.ann1.J8U28E Arachis hypogaea HOM05D001031 ORTHO05D000857 8.1e-09 63.2 52 51.9
arahy.Tifrunner.gnm1.ann1.ZRY0WK Arachis hypogaea HOM05D001031 ORTHO05D000857 8.1e-09 63.2 52 51.9
Cfa011855 Carpinus fangiana HOM05D001031 ORTHO05D000857 8.1e-09 63.2 54 51.9
Eucgr.K01300 Eucalyptus grandis HOM05D001031 ORTHO05D000857 8.1e-09 63.2 52 51.9
Glyma.18G217800 Glycine max HOM05D001031 ORTHO05D000857 8.1e-09 63.2 52 51.9
Ah.06g186860 Amaranthus hybridus HOM05D001031 ORTHO05D000857 1.1e-08 62.8 50 50.0
Ca_07794_v3 Cicer arietinum L. HOM05D001031 ORTHO05D000857 1.1e-08 62.8 55 47.3
Haze_24489 Corylus avellana HOM05D001031 ORTHO05D000857 1.1e-08 62.8 54 50.0
ECA248G0606 Erigeron canadensis HOM05D001031 ORTHO05D000857 1.1e-08 62.8 54 48.1
Gohir.A10G152100 Gossypium hirsutum HOM05D001031 ORTHO05D000857 1.1e-08 62.8 50 48.0
Medtr8g461170 Medicago truncatula HOM05D001031 ORTHO05D000857 1.1e-08 62.8 54 51.9
Nn4g23021 Nelumbo nucifera HOM05D001031 ORTHO05D000857 1.1e-08 62.8 50 48.0
PSO384G2441 Papaver somniferum HOM05D001031 ORTHO05D000857 1.1e-08 62.8 51 51.0
Psat5g145720 Pisum sativum HOM05D001031 ORTHO05D000857 1.1e-08 62.8 52 50.0
HPP92_019760 Vanilla planifolia HOM05D001031 ORTHO05D000857 1.1e-08 62.8 51 47.1
Lj6g0021716 Lotus japonicus HOM05D001031 ORTHO05D000857 1.4e-08 62.4 52 50.0
Lalb_Chr18g0054061 Lupinus albus HOM05D001031 ORTHO05D000857 1.4e-08 62.4 52 51.9
Actinidia29009 Actinidia chinensis HOM05D001031 ORTHO05D000857 1.8e-08 62.0 50 50.0
LjContig00141g0016501 Lotus japonicus HOM05D001031 ORTHO05D000857 1.8e-08 62.0 52 50.0
PSO339G2038 Papaver somniferum HOM05D001031 ORTHO05D000857 1.8e-08 62.0 51 51.0
Ah.08g219450 Amaranthus hybridus HOM05D001031 ORTHO05D000857 2.3e-08 61.6 50 48.0
Cpa.g.sc0.68 Carica papaya HOM05D001031 ORTHO05D000857 2.3e-08 61.6 48 54.2
Manes.09G121500 Manihot esculenta HOM05D001031 ORTHO05D000857 2.3e-08 61.6 50 52.0
PGR031G2938 Punica granatum HOM05D001031 ORTHO05D000857 2.3e-08 61.6 52 46.2
AUR62035475 Chenopodium quinoa HOM05D001031 ORTHO05D000857 3.1e-08 61.2 50 50.0
Glyma.11G200500 Glycine max HOM05D001031 ORTHO05D000857 3.1e-08 61.2 52 50.0
Lj1g0004998 Lotus japonicus HOM05D001031 ORTHO05D000857 3.1e-08 61.2 52 50.0
Medtr7g074120 Medicago truncatula HOM05D001031 ORTHO05D000857 3.1e-08 61.2 52 50.0
THA.LOC104806655 Tarenaya hassleriana HOM05D001031 ORTHO05D000857 3.1e-08 61.2 48 54.2
Aqoxy4G03310 Aquilegia oxysepala HOM05D001031 ORTHO05D000857 4.0e-08 60.8 52 46.2
MSTRG.10198 Avicennia marina HOM05D001031 ORTHO05D000857 4.0e-08 60.8 50 48.0
CANSAT54G1007 Cannabis sativa HOM05D001031 ORTHO05D000857 4.0e-08 60.8 50 52.0
DCAR_023960 Daucus carota HOM05D001031 ORTHO05D000857 4.0e-08 60.8 50 50.0
Nitab4.5_0004009g0010 Nicotiana tabacum HOM05D001031 ORTHO05D000857 4.0e-08 60.8 50 52.0
Peaxi162Scf00732g10014 Petunia axillaris HOM05D001031 ORTHO05D000857 4.0e-08 60.8 50 50.0
Phvul.008G243900 Phaseolus vulgaris HOM05D001031 ORTHO05D000857 4.0e-08 60.8 50 52.0
Lj3g0019388 Lotus japonicus HOM05D001031 ORTHO05D000857 5.2e-08 60.5 50 50.0
Lalb_Chr07g0195801 Lupinus albus HOM05D001031 ORTHO05D000857 5.2e-08 60.5 49 51.0
Lalb_Chr12g0210701 Lupinus albus HOM05D001031 ORTHO05D000857 5.2e-08 60.5 50 52.0
Nitab4.5_0003559g0050 Nicotiana tabacum HOM05D001031 ORTHO05D000857 5.2e-08 60.5 53 49.1
Peaxi162Scf00455g00122 Petunia axillaris HOM05D001031 ORTHO05D000857 5.2e-08 60.5 53 52.8
TPR.G24340 Trifolium pratense HOM05D001031 ORTHO05D000857 5.2e-08 60.5 52 50.0
CAN.G62.54 Capsicum annuum HOM05D001031 ORTHO05D000857 6.8e-08 60.1 49 53.1
CiPaw.10G166800 Carya illinoinensis HOM05D001031 ORTHO05D000857 6.8e-08 60.1 52 50.0
CDE12G0837 Ceratophyllum demersum HOM05D001031 ORTHO05D000857 6.8e-08 60.1 55 50.9
Nitab4.5_0003559g0010 Nicotiana tabacum HOM05D001031 ORTHO05D000857 6.8e-08 60.1 53 49.1
Sc20g0007260 Simmondsia chinensis HOM05D001031 ORTHO05D000857 6.8e-08 60.1 50 46.0
Peaxi162Scf00455g00129 Petunia axillaris HOM05D001031 ORTHO05D000857 8.9e-08 59.7 55 47.3
Duzib268G0351 Durio zibethinus HOM05D001031 ORTHO05D000857 1.2e-07 59.3 50 48.0
HanXRQChr01g0000411 Helianthus annuus HOM05D001031 ORTHO05D000857 1.2e-07 59.3 53 47.2
Nitab4.5_0001203g0010 Nicotiana tabacum HOM05D001031 ORTHO05D000857 1.2e-07 59.3 50 50.0
CAN.G659.22 Capsicum annuum HOM05D001031 ORTHO05D000857 1.5e-07 58.9 48 52.1
Eucgr.A00808 Eucalyptus grandis HOM05D001031 ORTHO05D000857 1.5e-07 58.9 52 44.2
Gohir.D10G114200 Gossypium hirsutum HOM05D001031 ORTHO05D000857 1.5e-07 58.9 50 46.0
Gorai.011G125900 Gossypium raimondii HOM05D001031 ORTHO05D000857 1.5e-07 58.9 50 46.0
Nitab4.5_0001629g0030 Nicotiana tabacum HOM05D001031 ORTHO05D000857 1.5e-07 58.9 50 48.0
TAR633G2690 Trochodendron aralioides HOM05D001031 ORTHO05D000857 1.5e-07 58.9 52 46.2
MD12G1193600 Malus domestica HOM05D001031 ORTHO05D000857 2.0e-07 58.5 52 44.2
Nitab4.5_0018862g0010 Nicotiana tabacum HOM05D001031 ORTHO05D000857 2.0e-07 58.5 53 47.2
TWI53G0866 Tripterygium wilfordii HOM05D001031 ORTHO05D000857 2.6e-07 58.2 50 48.0
HPP92_018082 Vanilla planifolia HOM05D001031 ORTHO05D000857 2.6e-07 58.2 49 46.9
Actinidia34506 Actinidia chinensis HOM05D001031 ORTHO05D000857 3.4e-07 57.8 52 48.1
Glyma.16G221400 Glycine max HOM05D001031 ORTHO05D000857 3.4e-07 57.8 50 50.0
AUR62042835 Chenopodium quinoa HOM05D001031 ORTHO05D000857 4.4e-07 57.4 50 44.0
MELO3C025259.2 Cucumis melo HOM05D001031 ORTHO05D000857 4.4e-07 57.4 50 48.0
Nitab4.5_0003037g0120 Nicotiana tabacum HOM05D001031 ORTHO05D000857 4.4e-07 57.4 48 50.0
Peaxi162Scf00424g00034 Petunia axillaris HOM05D001031 ORTHO05D000857 4.4e-07 57.4 53 47.2
PGSC0003DMG400017579 Solanum tuberosum HOM05D001031 ORTHO05D000857 4.4e-07 57.4 53 43.4
ATR0751G099 Amborella trichopoda HOM05D001031 ORTHO05D000857 5.8e-07 57.0 41 53.7
ECA247G2060 Erigeron canadensis HOM05D001031 ORTHO05D000857 5.8e-07 57.0 52 42.3
Potri.006G111700 Populus trichocarpa HOM05D001031 ORTHO05D000857 5.8e-07 57.0 48 52.1
THA.LOC104806250 Tarenaya hassleriana HOM05D001031 ORTHO05D000857 5.8e-07 57.0 48 50.0
CiPaw.09G223500 Carya illinoinensis HOM05D001031 ORTHO05D000857 7.6e-07 56.6 48 50.0
Oeu026928.2 Olea europaea HOM05D001031 ORTHO05D000857 7.6e-07 56.6 52 44.2
Psat3g117640 Pisum sativum HOM05D001031 ORTHO05D000857 7.6e-07 56.6 49 49.0
CSS0040317 Camellia sinensis var. sinensis HOM05D001031 ORTHO05D000857 9.9e-07 56.2 54 48.1
FvH4_6g09410 Fragaria vesca HOM05D001031 ORTHO05D000857 9.9e-07 56.2 50 48.0
FAN02G4181 Fragaria x ananassa HOM05D001031 ORTHO05D000857 9.9e-07 56.2 50 48.0
FAN14G3272 Fragaria x ananassa HOM05D001031 ORTHO05D000857 9.9e-07 56.2 50 48.0
Hma1.2p1_0174F.1_g076620 Hydrangea macrophylla HOM05D001031 ORTHO05D000857 9.9e-07 56.2 50 46.0
Lsat_1_v5_gn_8_109721 Lactuca sativa HOM05D001031 ORTHO05D000857 9.9e-07 56.2 53 41.5
Lj2C56T8 Lonicera japonica HOM05D001031 ORTHO05D000857 9.9e-07 56.2 50 46.0
MBI15_g31035_MAGBIO Magnolia biondii HOM05D001031 ORTHO05D000857 9.9e-07 56.2 52 44.2
Manes.08G167900 Manihot esculenta HOM05D001031 ORTHO05D000857 9.9e-07 56.2 49 49.0
Nitab4.5_0000195g0100 Nicotiana tabacum HOM05D001031 ORTHO05D000857 9.9e-07 56.2 53 47.2
Thecc.04G147500 Theobroma cacao HOM05D001031 ORTHO05D000857 9.9e-07 56.2 48 45.8
Ah.08g219440 Amaranthus hybridus HOM05D001031 ORTHO05D000857 1.3e-06 55.8 49 44.9
CSS0032313 Camellia sinensis var. sinensis HOM05D001031 ORTHO05D000857 1.3e-06 55.8 50 44.0
CSS0037610 Camellia sinensis var. sinensis HOM05D001031 ORTHO05D000857 1.3e-06 55.8 50 44.0
CAN.G309.37 Capsicum annuum HOM05D001031 ORTHO05D000857 1.3e-06 55.8 39 59.0
ClCG04G006160 Citrullus lanatus HOM05D001031 ORTHO05D000857 1.3e-06 55.8 50 46.0
Migut.J00011 Erythranthe guttata HOM05D001031 ORTHO05D000857 1.3e-06 55.8 50 42.0
Thecc.02G366500 Theobroma cacao HOM05D001031 ORTHO05D000857 1.3e-06 55.8 50 44.0
HanXRQChr08g0231181 Helianthus annuus HOM05D001031 ORTHO05D000857 1.7e-06 55.5 52 42.3
Lsat_1_v5_gn_9_15361 Lactuca sativa HOM05D001031 ORTHO05D000857 1.7e-06 55.5 52 40.4
Nitab4.5_0003559g0030 Nicotiana tabacum HOM05D001031 ORTHO05D000857 1.7e-06 55.5 53 47.2
TWI77G0634 Tripterygium wilfordii HOM05D001031 ORTHO05D000857 1.7e-06 55.5 50 48.0
CsaV3_4G027400 Cucumis sativus L. HOM05D001031 ORTHO05D000857 2.2e-06 55.1 50 46.0
Lalb_Chr01g0023961 Lupinus albus HOM05D001031 ORTHO05D000857 2.2e-06 55.1 52 40.4
PGR004G2073 Punica granatum HOM05D001031 ORTHO05D000857 2.2e-06 55.1 52 42.3
Sabra04G0157500 Salix brachista HOM05D001031 ORTHO05D000857 2.2e-06 55.1 48 52.1
Atru.chr8.62 Acer truncatum HOM05D001031 ORTHO05D000857 2.9e-06 54.7 48 47.9
Lsat_1_v5_gn_5_177181 Lactuca sativa HOM05D001031 ORTHO05D000857 2.9e-06 54.7 55 40.0
Cfa016999 Carpinus fangiana HOM05D001031 ORTHO05D000857 3.7e-06 54.3 49 44.9
HanXRQChr15g0464531 Helianthus annuus HOM05D001031 ORTHO05D000857 3.7e-06 54.3 52 46.2
QL07p031337 Quercus lobata HOM05D001031 ORTHO05D000857 3.7e-06 54.3 50 46.0
CAN.G62.55 Capsicum annuum HOM05D001031 ORTHO05D000857 4.9e-06 53.9 51 45.1
CDE12G0575 Ceratophyllum demersum HOM05D001031 ORTHO05D000857 4.9e-06 53.9 50 38.0
SHI12949 Sapria himalayana HOM05D001031 ORTHO05D000857 4.9e-06 53.9 49 46.9
Haze_21229 Corylus avellana HOM05D001031 ORTHO05D000857 6.4e-06 53.5 47 46.8
Dinv16939 Davidia involucrata HOM05D001031 ORTHO05D000857 6.4e-06 53.5 50 42.0
FAN09G0294 Fragaria x ananassa HOM05D001031 ORTHO05D000857 6.4e-06 53.5 50 44.0
Glyma.03G001000 Glycine max HOM05D001031 ORTHO05D000857 8.4e-06 53.1 47 46.8
VMungo1383G0927 Vigna mungo HOM05D001031 ORTHO05D000857 8.4e-06 53.1 52 44.2


User provided reference genes

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