Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 5.8e-175 617.5 312 100.0
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.2e-173 611.7 312 98.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 4.6e-164 581.3 316 94.0
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 2.2e-81 306.6 180 85.0
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 3.1e-80 302.8 180 82.8
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.7e-78 297.0 180 81.7
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 6.6e-78 295.0 176 82.4
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.9e-77 293.5 208 69.7
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.1e-76 290.0 204 71.1
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 6.8e-75 285.0 184 75.5
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-74 284.3 180 78.3
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 2.6e-74 283.1 181 75.7
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.4e-74 282.7 180 77.8
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 4.4e-74 282.3 174 79.3
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.5e-74 281.6 176 78.4
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.8e-74 281.2 178 78.1
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.7e-73 280.4 179 76.0
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 2.2e-73 280.0 179 74.3
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 2.2e-73 280.0 179 74.3
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.0e-71 273.5 178 72.5
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 4.6e-71 272.3 184 73.4
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 4.6e-71 272.3 178 72.5
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 5.9e-71 271.9 178 71.9
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 5.9e-71 271.9 180 74.4
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 7.8e-71 271.6 181 72.9
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.0e-70 271.2 181 73.5
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.0e-70 271.2 181 73.5
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.0e-70 271.2 181 73.5
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.0e-70 271.2 184 71.7
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.3e-70 270.8 181 72.9
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.3e-70 270.8 180 73.9
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 3.0e-70 269.6 180 72.8
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 3.9e-70 269.2 184 66.8
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 5.0e-70 268.9 181 71.8
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 8.6e-70 268.1 176 75.0
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.5e-69 267.3 178 73.0
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.5e-69 267.3 181 71.8
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.5e-69 267.3 181 71.3
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.5e-69 267.3 180 72.2
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.5e-69 267.3 180 72.8
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.9e-69 266.9 177 70.1
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.9e-69 266.9 180 72.8
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 5.6e-69 265.4 184 67.9
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 9.5e-69 264.6 176 73.3
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 9.5e-69 264.6 184 71.2
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.2e-68 264.2 178 71.9
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.2e-68 264.2 184 71.2
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.6e-68 263.8 189 68.8
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 2.1e-68 263.5 181 68.5
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 2.8e-68 263.1 178 71.9
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.6e-68 262.7 181 70.7
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.2e-68 261.9 178 70.8
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 8.0e-68 261.5 178 71.3
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 8.0e-68 261.5 162 78.4
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.4e-67 260.8 178 71.9
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.4e-67 260.8 180 69.4
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.4e-67 260.8 180 69.4
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.4e-67 260.8 186 69.9
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.3e-67 260.0 178 71.3
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.3e-67 260.0 163 75.5
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 2.3e-67 260.0 199 63.8
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 2.3e-67 260.0 180 68.9
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 4.0e-67 259.2 176 72.7
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 4.0e-67 259.2 176 72.7
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 5.2e-67 258.8 178 71.3
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 5.2e-67 258.8 181 70.2
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 6.8e-67 258.5 178 70.2
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 6.8e-67 258.5 181 70.2
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 6.8e-67 258.5 181 70.2
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 8.9e-67 258.1 181 70.2
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-66 257.7 178 70.8
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.2e-66 257.7 178 70.8
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.2e-66 257.7 178 70.8
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.2e-66 257.7 178 70.8
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.2e-66 257.7 176 69.3
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.2e-66 257.7 181 69.6
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.5e-66 257.3 180 68.9
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 2.6e-66 256.5 181 68.5
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 3.4e-66 256.1 178 70.2
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 4.4e-66 255.8 169 75.7
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 4.4e-66 255.8 178 70.8
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 4.4e-66 255.8 176 72.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 9.8e-66 254.6 178 67.4
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.3e-65 254.2 178 70.8
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.2e-65 253.4 180 68.3
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.9e-65 253.1 178 68.5
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.9e-65 253.1 178 68.5
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 2.9e-65 253.1 178 70.2
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.7e-65 252.7 163 76.1
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 4.9e-65 252.3 178 70.2
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 4.9e-65 252.3 178 70.2
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 6.4e-65 251.9 180 66.7
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 6.4e-65 251.9 176 68.2
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 8.3e-65 251.5 178 69.7
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.1e-64 251.1 178 67.4
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.1e-64 251.1 178 68.0
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.1e-64 251.1 180 67.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.1e-64 251.1 180 67.8
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.4e-64 250.8 180 67.2
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.9e-64 250.4 176 67.6
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.9e-64 250.4 176 67.6
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.9e-64 250.4 176 68.2
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.9e-64 250.4 180 67.2
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.4e-64 250.0 179 66.5
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 2.4e-64 250.0 180 67.8
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.4e-64 250.0 176 67.6
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 4.1e-64 249.2 176 68.8
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.4e-64 248.8 150 80.0
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 7.0e-64 248.4 180 67.2
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 7.0e-64 248.4 178 64.0
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.6e-63 247.3 180 67.2
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 2.0e-63 246.9 177 68.9
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 2.7e-63 246.5 180 63.3
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 2.7e-63 246.5 173 69.4
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 3.5e-63 246.1 177 67.2
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 6.0e-63 245.4 180 66.1
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 7.8e-63 245.0 178 65.2
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.3e-62 244.2 170 69.4
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.6e-62 241.9 147 79.6
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.9e-61 240.4 179 64.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 4.3e-61 239.2 175 66.9
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 4.3e-61 239.2 181 64.1
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.8e-59 233.8 170 66.5
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 2.3e-59 233.4 180 61.1
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.3e-59 233.4 170 66.5
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 5.2e-59 232.3 166 69.9
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 2.0e-58 230.3 177 62.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.4e-58 229.2 176 63.1
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 7.5e-58 228.4 170 64.1
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.7e-57 227.3 187 61.0
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 3.2e-56 223.0 169 61.5
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.1e-56 221.9 164 70.7
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.0e-54 218.0 161 64.6
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.3e-54 217.6 171 61.4
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 5.1e-54 215.7 181 58.6
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 8.6e-54 214.9 159 66.7
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.3e-53 213.0 165 63.0
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.8e-51 207.2 193 52.8
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 6.8e-51 205.3 165 64.2
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-50 204.1 132 72.7
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 2.1e-47 193.7 126 75.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.6e-46 188.3 147 67.3
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.1e-40 171.4 112 71.4
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 6.9e-35 152.1 110 60.9
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.2e-34 151.4 168 45.8
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 7.6e-34 148.7 150 50.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.3e-30 137.9 169 42.6
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 4.3e-29 132.9 161 44.7
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 6.2e-28 129.0 168 39.9
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 2.4e-27 127.1 156 42.3
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.2e-24 116.3 74 71.6
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 8.2e-20 102.1 86 59.3
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.0e-17 95.1 150 38.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.2e-15 88.2 87 47.1
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.0e-14 83.6 52 69.2
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.4e-08 64.7 61 47.5
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.5e-08 63.9 60 48.3
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 1.3e-06 58.2 62 43.5


User provided reference genes

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